Wall clock time and date at job start Tue Mar 31 2020 06:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 110.45716 * 2 1 4 4 C 1.54480 * 110.51219 * 237.24797 * 2 1 3 5 5 O 1.44427 * 104.80084 * 265.33129 * 4 2 1 6 6 C 1.44778 * 105.29764 * 319.45369 * 5 4 2 7 7 C 1.54481 * 104.62915 * 40.53766 * 6 5 4 8 8 H 1.08998 * 110.51283 * 217.27559 * 7 6 5 9 9 N 1.46899 * 110.51507 * 94.69820 * 7 6 5 10 10 C 1.46910 * 110.99689 * 80.75820 * 9 7 6 11 11 H 1.08998 * 109.46926 * 322.43877 * 10 9 7 12 12 C 1.52994 * 109.47072 * 202.44174 * 10 9 7 13 13 C 1.50706 * 109.47210 * 63.53896 * 12 10 9 14 14 H 1.07994 * 119.99880 * 0.02562 * 13 12 10 15 15 C 1.37873 * 119.99904 * 179.97438 * 13 12 10 16 16 N 1.31522 * 120.00334 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00087 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46602 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47496 * 119.99732 * 17 15 13 20 20 H 1.48501 * 109.46837 * 240.00177 * 17 15 13 21 21 C 1.50695 * 109.47060 * 82.44124 * 10 9 7 22 22 C 1.38236 * 120.00293 * 226.93026 * 21 10 9 23 23 C 1.38230 * 120.00172 * 179.72891 * 22 21 10 24 24 C 1.38234 * 120.00250 * 0.24704 * 23 22 21 25 25 C 1.38244 * 119.99795 * 0.02789 * 24 23 22 26 26 C 1.38228 * 119.99742 * 359.95315 * 25 24 23 27 27 H 1.08994 * 109.47441 * 303.85724 * 1 2 3 28 28 H 1.09004 * 109.47054 * 63.85463 * 1 2 3 29 29 H 1.09007 * 109.47204 * 183.85267 * 1 2 3 30 30 H 1.08997 * 109.47122 * 182.60480 * 3 2 1 31 31 H 1.09004 * 109.46907 * 302.60394 * 3 2 1 32 32 H 1.09003 * 109.46762 * 62.60595 * 3 2 1 33 33 H 1.09001 * 110.37442 * 24.16154 * 4 2 1 34 34 H 1.08998 * 110.37285 * 146.50190 * 4 2 1 35 35 H 1.08997 * 110.42618 * 281.77715 * 6 5 4 36 36 H 1.09003 * 110.48861 * 159.32215 * 6 5 4 37 37 H 1.00899 * 111.00133 * 204.71390 * 9 7 6 38 38 H 1.08993 * 109.47172 * 183.54111 * 12 10 9 39 39 H 1.09005 * 109.46998 * 303.54354 * 12 10 9 40 40 H 0.96993 * 120.00074 * 179.97438 * 16 15 13 41 41 H 1.07998 * 119.99383 * 359.97438 * 22 21 10 42 42 H 1.08001 * 119.99907 * 180.27798 * 23 22 21 43 43 H 1.07994 * 120.00247 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.99716 * 179.97438 * 25 24 23 45 45 H 1.08004 * 120.00009 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4336 0.0000 4 6 2.0713 -0.7828 -1.2168 5 8 2.3070 -2.1186 -0.7210 6 6 2.8780 -1.9415 0.5976 7 6 2.0714 -0.7798 1.2191 8 1 2.7199 -0.1440 1.8218 9 7 0.9630 -1.2993 2.0313 10 6 1.4331 -1.7130 3.3603 11 1 2.4179 -2.1714 3.2708 12 6 0.4520 -2.7244 3.9562 13 6 0.4303 -3.9662 3.1025 14 1 1.0542 -4.0280 2.2232 15 6 -0.3854 -5.0238 3.4448 16 7 -1.1448 -4.9488 4.5160 17 14 -0.4118 -6.5634 2.3871 18 1 0.5258 -6.3971 1.2475 19 1 0.0033 -7.7322 3.2037 20 1 -1.7858 -6.7844 1.8690 21 6 1.5200 -0.5073 4.2601 22 6 2.6480 -0.3008 5.0321 23 6 2.7300 0.8081 5.8533 24 6 1.6821 1.7080 5.9063 25 6 0.5517 1.4986 5.1386 26 6 0.4698 0.3898 4.3171 27 1 -0.3634 0.5725 0.8533 28 1 -0.3633 0.4529 -0.9225 29 1 -0.3634 -1.0254 0.0691 30 1 3.1536 1.4152 -0.0467 31 1 1.6729 1.9675 -0.8658 32 1 1.7487 1.9392 0.9125 33 1 1.3311 -0.8000 -2.0168 34 1 3.0023 -0.3392 -1.5697 35 1 3.9320 -1.6742 0.5229 36 1 2.7564 -2.8478 1.1909 37 1 0.2201 -0.6206 2.1056 38 1 0.7667 -2.9838 4.9669 39 1 -0.5462 -2.2874 3.9873 40 1 -1.7189 -5.6927 4.7565 41 1 3.4667 -1.0039 4.9906 42 1 3.6132 0.9717 6.4530 43 1 1.7460 2.5741 6.5482 44 1 -0.2672 2.2014 5.1804 45 1 -0.4131 0.2264 3.7170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894357829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:01 Heat of formation + Delta-G solvation = -23.231032 kcal Electronic energy + Delta-G solvation = -24195.810785 eV Core-core repulsion = 20984.792024 eV Total energy + Delta-G solvation = -3211.018761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.02888 -38.90704 -35.73911 -34.22044 -32.49642 -30.84262 -30.60312 -28.82097 -27.88318 -26.65967 -25.83159 -24.38531 -22.41514 -21.85772 -21.75091 -19.46764 -18.92163 -17.11435 -16.13388 -15.95465 -15.59693 -15.03862 -14.82868 -14.78647 -14.44024 -13.96221 -13.86968 -13.24902 -13.15202 -13.02789 -12.82102 -12.65337 -12.35987 -12.13208 -12.00158 -11.59522 -11.37638 -11.11040 -11.05034 -10.96678 -10.77266 -10.60762 -10.54184 -10.43667 -10.29529 -10.06374 -9.56421 -9.40492 -8.96928 -8.65178 -8.26598 -8.23089 -7.67650 -5.85737 -3.83673 1.67006 1.67309 3.41837 3.49512 3.56864 4.07857 4.24716 4.59040 4.60658 4.64169 4.95355 5.10277 5.14743 5.16755 5.26111 5.36869 5.39981 5.42010 5.51615 5.57144 5.62756 5.74888 5.77890 5.82142 5.83688 5.87413 5.93872 6.00989 6.05893 6.15201 6.23830 6.28443 6.36523 6.37512 6.60437 6.73212 6.74432 6.82479 6.95653 7.10494 7.29936 7.54198 7.68323 7.96805 8.03331 8.16174 8.58180 9.22326 9.78236 11.26085 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.010288 B = 0.007413 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.052125 B = 3776.134138 C = 5741.872604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 C -0.137 4.137 4 C 0.056 3.944 5 O -0.364 6.364 6 C 0.054 3.946 7 C 0.063 3.937 8 H 0.048 0.952 9 N -0.644 5.644 10 C 0.126 3.874 11 H 0.073 0.927 12 C 0.042 3.958 13 C -0.486 4.486 14 H 0.063 0.937 15 C 0.051 3.949 16 N -0.903 5.903 17 Si 0.888 3.112 18 H -0.271 1.271 19 H -0.289 1.289 20 H -0.287 1.287 21 C -0.092 4.092 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.136 4.136 25 C -0.120 4.120 26 C -0.115 4.115 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.106 0.894 37 H 0.338 0.662 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.256 0.744 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.122 15.143 -4.735 17.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.099 4.099 3 C -0.194 4.194 4 C -0.021 4.021 5 O -0.283 6.283 6 C -0.023 4.023 7 C -0.048 4.048 8 H 0.066 0.934 9 N -0.277 5.277 10 C 0.016 3.984 11 H 0.091 0.909 12 C 0.005 3.995 13 C -0.525 4.525 14 H 0.081 0.919 15 C -0.148 4.148 16 N -0.544 5.544 17 Si 0.717 3.283 18 H -0.196 1.196 19 H -0.215 1.215 20 H -0.214 1.214 21 C -0.094 4.094 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.155 4.155 25 C -0.138 4.138 26 C -0.134 4.134 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.124 0.876 37 H 0.161 0.839 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.066 0.934 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.975 14.195 -5.038 16.599 hybrid contribution 0.064 0.252 0.222 0.342 sum 7.039 14.447 -4.817 16.777 Atomic orbital electron populations 1.21759 0.93058 1.03967 1.00555 1.22036 0.97442 0.95061 0.95313 1.21839 1.00559 0.95136 1.01885 1.23430 0.99087 0.83688 0.95901 1.89219 1.83125 1.24809 1.31105 1.23596 0.94414 1.00344 0.83961 1.22884 0.93670 0.94274 0.93992 0.93437 1.60893 1.08790 1.44101 1.13918 1.21041 1.00998 0.91204 0.85159 0.90865 1.19089 0.93003 0.92134 0.95298 1.21160 1.23196 0.98534 1.09603 0.91916 1.24985 0.95988 0.98610 0.95237 1.69983 1.27185 1.31756 1.25516 0.86588 0.77749 0.83345 0.80655 1.19586 1.21526 1.21357 1.21210 0.93320 0.96981 0.97853 1.21100 0.98104 0.97426 0.97044 1.21074 0.98602 0.95142 0.99171 1.21008 0.94436 0.99687 1.00320 1.21064 0.97793 0.97776 0.97148 1.20972 0.98354 0.94497 0.99564 0.92922 0.93159 0.89732 0.92730 0.92440 0.92471 0.89550 0.93055 0.93284 0.87572 0.83944 0.96358 0.96373 0.93422 0.86380 0.86706 0.86821 0.86637 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 7.18 37.16 0.27 -1.52 16 2 C -0.10 -1.27 1.05 -152.94 -0.16 -1.43 16 3 C -0.14 -1.44 8.31 37.16 0.31 -1.13 16 4 C 0.06 0.75 6.74 37.93 0.26 1.01 16 5 O -0.36 -6.33 11.66 -35.23 -0.41 -6.74 16 6 C 0.05 0.88 7.09 37.93 0.27 1.15 16 7 C 0.06 0.95 2.87 -66.14 -0.19 0.76 16 8 H 0.05 0.71 7.27 -51.93 -0.38 0.33 16 9 N -0.64 -11.50 4.77 -99.31 -0.47 -11.97 16 10 C 0.13 2.44 1.95 -68.86 -0.13 2.30 16 11 H 0.07 1.44 6.99 -51.93 -0.36 1.08 16 12 C 0.04 1.05 4.56 -27.88 -0.13 0.92 16 13 C -0.49 -13.43 8.80 -34.44 -0.30 -13.74 16 14 H 0.06 1.73 7.42 -52.49 -0.39 1.34 16 15 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 16 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 17 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 18 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 C -0.09 -1.57 4.48 -104.62 -0.47 -2.04 16 22 C -0.12 -1.84 9.67 -39.58 -0.38 -2.23 16 23 C -0.12 -1.67 10.05 -39.59 -0.40 -2.06 16 24 C -0.14 -1.80 10.05 -39.58 -0.40 -2.19 16 25 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 26 C -0.12 -1.85 8.96 -39.58 -0.35 -2.20 16 27 H 0.05 0.66 7.10 -51.93 -0.37 0.29 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.35 7.55 -51.92 -0.39 0.96 16 30 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.06 7.87 -51.93 -0.41 0.65 16 34 H 0.05 0.59 7.83 -51.93 -0.41 0.19 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.11 1.98 7.10 -51.93 -0.37 1.61 16 37 H 0.34 5.73 4.27 -39.29 -0.17 5.56 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.48 8.12 -51.93 -0.42 0.06 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.12 1.72 7.99 -52.49 -0.42 1.30 16 42 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.12 1.89 6.91 -52.48 -0.36 1.52 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -30.81 355.58 -9.51 -40.32 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.38 Total: 5.42 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -2.31 Total: -23.10 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.26 Total: -38.55 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.41 Total: -6.74 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.81 -9.51 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894357829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.090 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds