Wall clock time and date at job start Tue Mar 31 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 110.45716 * 2 1 4 4 C 1.54480 * 110.51219 * 237.24797 * 2 1 3 5 5 O 1.44427 * 104.80084 * 265.33129 * 4 2 1 6 6 C 1.44778 * 105.29764 * 319.45369 * 5 4 2 7 7 C 1.54481 * 104.62915 * 40.53766 * 6 5 4 8 8 H 1.08998 * 110.51283 * 217.27559 * 7 6 5 9 9 N 1.46899 * 110.51507 * 94.69820 * 7 6 5 10 10 C 1.46910 * 110.99689 * 80.75820 * 9 7 6 11 11 H 1.08998 * 109.46926 * 322.43877 * 10 9 7 12 12 C 1.52994 * 109.47072 * 202.44174 * 10 9 7 13 13 C 1.50706 * 109.47210 * 63.53896 * 12 10 9 14 14 H 1.07994 * 119.99880 * 0.02562 * 13 12 10 15 15 C 1.37873 * 119.99904 * 179.97438 * 13 12 10 16 16 N 1.31522 * 120.00334 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00087 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46602 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47496 * 119.99732 * 17 15 13 20 20 H 1.48501 * 109.46837 * 240.00177 * 17 15 13 21 21 C 1.50695 * 109.47060 * 82.44124 * 10 9 7 22 22 C 1.38236 * 120.00293 * 226.93026 * 21 10 9 23 23 C 1.38230 * 120.00172 * 179.72891 * 22 21 10 24 24 C 1.38234 * 120.00250 * 0.24704 * 23 22 21 25 25 C 1.38244 * 119.99795 * 0.02789 * 24 23 22 26 26 C 1.38228 * 119.99742 * 359.95315 * 25 24 23 27 27 H 1.08994 * 109.47441 * 303.85724 * 1 2 3 28 28 H 1.09004 * 109.47054 * 63.85463 * 1 2 3 29 29 H 1.09007 * 109.47204 * 183.85267 * 1 2 3 30 30 H 1.08997 * 109.47122 * 182.60480 * 3 2 1 31 31 H 1.09004 * 109.46907 * 302.60394 * 3 2 1 32 32 H 1.09003 * 109.46762 * 62.60595 * 3 2 1 33 33 H 1.09001 * 110.37442 * 24.16154 * 4 2 1 34 34 H 1.08998 * 110.37285 * 146.50190 * 4 2 1 35 35 H 1.08997 * 110.42618 * 281.77715 * 6 5 4 36 36 H 1.09003 * 110.48861 * 159.32215 * 6 5 4 37 37 H 1.00899 * 111.00133 * 204.71390 * 9 7 6 38 38 H 1.08993 * 109.47172 * 183.54111 * 12 10 9 39 39 H 1.09005 * 109.46998 * 303.54354 * 12 10 9 40 40 H 0.96993 * 120.00074 * 179.97438 * 16 15 13 41 41 H 1.07998 * 119.99383 * 359.97438 * 22 21 10 42 42 H 1.08001 * 119.99907 * 180.27798 * 23 22 21 43 43 H 1.07994 * 120.00247 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.99716 * 179.97438 * 25 24 23 45 45 H 1.08004 * 120.00009 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4336 0.0000 4 6 2.0713 -0.7828 -1.2168 5 8 2.3070 -2.1186 -0.7210 6 6 2.8780 -1.9415 0.5976 7 6 2.0714 -0.7798 1.2191 8 1 2.7199 -0.1440 1.8218 9 7 0.9630 -1.2993 2.0313 10 6 1.4331 -1.7130 3.3603 11 1 2.4179 -2.1714 3.2708 12 6 0.4520 -2.7244 3.9562 13 6 0.4303 -3.9662 3.1025 14 1 1.0542 -4.0280 2.2232 15 6 -0.3854 -5.0238 3.4448 16 7 -1.1448 -4.9488 4.5160 17 14 -0.4118 -6.5634 2.3871 18 1 0.5258 -6.3971 1.2475 19 1 0.0033 -7.7322 3.2037 20 1 -1.7858 -6.7844 1.8690 21 6 1.5200 -0.5073 4.2601 22 6 2.6480 -0.3008 5.0321 23 6 2.7300 0.8081 5.8533 24 6 1.6821 1.7080 5.9063 25 6 0.5517 1.4986 5.1386 26 6 0.4698 0.3898 4.3171 27 1 -0.3634 0.5725 0.8533 28 1 -0.3633 0.4529 -0.9225 29 1 -0.3634 -1.0254 0.0691 30 1 3.1536 1.4152 -0.0467 31 1 1.6729 1.9675 -0.8658 32 1 1.7487 1.9392 0.9125 33 1 1.3311 -0.8000 -2.0168 34 1 3.0023 -0.3392 -1.5697 35 1 3.9320 -1.6742 0.5229 36 1 2.7564 -2.8478 1.1909 37 1 0.2201 -0.6206 2.1056 38 1 0.7667 -2.9838 4.9669 39 1 -0.5462 -2.2874 3.9873 40 1 -1.7189 -5.6927 4.7565 41 1 3.4667 -1.0039 4.9906 42 1 3.6132 0.9717 6.4530 43 1 1.7460 2.5741 6.5482 44 1 -0.2672 2.2014 5.1804 45 1 -0.4131 0.2264 3.7170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894357829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:00 Heat of formation + Delta-G solvation = -41.173981 kcal Electronic energy + Delta-G solvation = -24196.588849 eV Core-core repulsion = 20984.792024 eV Total energy + Delta-G solvation = -3211.796825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.24786 -40.08360 -37.14763 -35.51860 -34.49486 -32.10448 -31.75267 -30.49624 -29.12839 -27.89552 -26.86791 -26.13569 -23.77999 -23.34029 -22.93987 -20.90562 -20.05531 -18.67533 -17.79753 -17.29321 -16.81099 -16.48455 -16.29570 -16.03826 -15.94054 -15.25809 -15.06675 -14.50985 -14.34979 -14.26493 -14.13071 -13.88419 -13.77663 -13.65711 -13.35206 -12.88301 -12.86755 -12.64386 -12.48594 -12.43228 -12.23591 -12.13820 -11.78517 -11.73246 -11.63255 -11.43814 -11.34429 -11.11027 -10.57754 -10.49329 -9.79186 -9.54416 -9.06142 -8.09942 -6.14103 0.50261 0.53120 1.38999 1.40897 1.54597 2.46888 2.92092 3.10377 3.21238 3.35720 3.50187 3.88238 3.95963 4.01333 4.07386 4.19233 4.23751 4.30895 4.36143 4.45769 4.48934 4.63536 4.69364 4.73033 4.76148 4.78771 4.82084 4.89346 4.99418 5.06892 5.08426 5.16145 5.17683 5.19066 5.30615 5.48268 5.50561 5.59671 5.62158 5.63998 5.73586 5.89860 5.94682 6.16466 6.32653 6.48461 6.66610 6.99902 7.51565 9.02235 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.010288 B = 0.007413 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.052125 B = 3776.134138 C = 5741.872604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C -0.129 4.129 4 C 0.052 3.948 5 O -0.397 6.397 6 C 0.053 3.947 7 C 0.066 3.934 8 H 0.055 0.945 9 N -0.659 5.659 10 C 0.143 3.857 11 H 0.064 0.936 12 C 0.053 3.947 13 C -0.491 4.491 14 H 0.058 0.942 15 C -0.003 4.003 16 N -0.940 5.940 17 Si 0.952 3.048 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.283 1.283 21 C -0.114 4.114 22 C -0.132 4.132 23 C -0.120 4.120 24 C -0.130 4.130 25 C -0.120 4.120 26 C -0.131 4.131 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.341 0.659 38 H -0.014 1.014 39 H -0.010 1.010 40 H 0.258 0.742 41 H 0.120 0.880 42 H 0.145 0.855 43 H 0.149 0.851 44 H 0.141 0.859 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.260 17.574 -5.362 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.093 4.093 3 C -0.187 4.187 4 C -0.024 4.024 5 O -0.316 6.316 6 C -0.024 4.024 7 C -0.045 4.045 8 H 0.073 0.927 9 N -0.293 5.293 10 C 0.033 3.967 11 H 0.082 0.918 12 C 0.016 3.984 13 C -0.530 4.530 14 H 0.076 0.924 15 C -0.199 4.199 16 N -0.582 5.582 17 Si 0.779 3.221 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.210 1.210 21 C -0.116 4.116 22 C -0.151 4.151 23 C -0.137 4.137 24 C -0.147 4.147 25 C -0.138 4.138 26 C -0.149 4.149 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.164 0.836 38 H 0.004 0.996 39 H 0.009 0.991 40 H 0.067 0.933 41 H 0.138 0.862 42 H 0.163 0.837 43 H 0.167 0.833 44 H 0.159 0.841 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.123 16.636 -5.676 19.364 hybrid contribution -0.290 -0.452 0.441 0.695 sum 7.833 16.184 -5.235 18.727 Atomic orbital electron populations 1.21702 0.93484 1.01938 1.01896 1.22040 0.97079 0.96417 0.93774 1.21785 1.01141 0.93033 1.02711 1.23675 1.00642 0.82045 0.96072 1.89173 1.83513 1.27511 1.31403 1.23575 0.96031 0.99211 0.83588 1.22897 0.92856 0.94245 0.94476 0.92709 1.60750 1.10124 1.45029 1.13358 1.20496 0.98406 0.91275 0.86508 0.91784 1.18851 0.92998 0.92913 0.93637 1.21461 1.22475 0.99596 1.09420 0.92409 1.25792 0.95856 1.01804 0.96466 1.70104 1.28147 1.32783 1.27168 0.85578 0.77731 0.79779 0.79017 1.19343 1.20690 1.20951 1.20962 0.94995 0.96746 0.98869 1.21253 0.97771 0.98625 0.97450 1.21425 0.99882 0.94050 0.98387 1.21453 0.93405 1.00268 0.99612 1.21380 0.99030 0.97182 0.96224 1.21019 0.97804 0.95502 1.00591 0.92662 0.90827 0.93282 0.91756 0.90443 0.92697 0.88591 0.90607 0.90711 0.91039 0.83626 0.99565 0.99132 0.93333 0.86155 0.83740 0.83321 0.84086 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 7.18 71.98 0.52 -2.88 16 2 C -0.09 -2.25 1.05 -51.16 -0.05 -2.31 16 3 C -0.13 -2.33 8.31 71.98 0.60 -1.73 16 4 C 0.05 1.30 6.74 72.49 0.49 1.79 16 5 O -0.40 -13.76 11.66 -148.98 -1.74 -15.50 16 6 C 0.05 1.74 7.09 72.49 0.51 2.26 16 7 C 0.07 1.99 2.87 45.93 0.13 2.12 16 8 H 0.06 1.59 7.27 -2.39 -0.02 1.58 16 9 N -0.66 -24.51 4.77 -468.11 -2.23 -26.75 16 10 C 0.14 5.85 1.95 44.16 0.09 5.94 16 11 H 0.06 2.68 6.99 -2.39 -0.02 2.66 16 12 C 0.05 2.84 4.56 29.85 0.14 2.97 16 13 C -0.49 -28.43 8.80 25.60 0.23 -28.21 16 14 H 0.06 3.35 7.42 -2.91 -0.02 3.32 16 15 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 16 N -0.94 -58.86 13.29 21.45 0.28 -58.57 16 17 Si 0.95 47.15 29.54 68.60 2.03 49.18 16 18 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 21 C -0.11 -3.99 4.48 -19.87 -0.09 -4.08 16 22 C -0.13 -4.07 9.67 22.27 0.22 -3.85 16 23 C -0.12 -2.96 10.05 22.27 0.22 -2.73 16 24 C -0.13 -2.97 10.05 22.27 0.22 -2.75 16 25 C -0.12 -3.10 10.05 22.27 0.22 -2.88 16 26 C -0.13 -4.20 8.96 22.27 0.20 -4.00 16 27 H 0.05 1.36 7.10 -2.39 -0.02 1.34 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.05 1.61 7.55 -2.38 -0.02 1.59 16 30 H 0.06 1.05 8.09 -2.39 -0.02 1.03 16 31 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 2.17 7.87 -2.39 -0.02 2.15 16 34 H 0.08 1.52 7.83 -2.39 -0.02 1.50 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.07 2.82 7.10 -2.39 -0.02 2.80 16 37 H 0.34 12.07 4.27 -89.69 -0.38 11.68 16 38 H -0.01 -0.82 8.14 -2.39 -0.02 -0.83 16 39 H -0.01 -0.56 8.12 -2.38 -0.02 -0.58 16 40 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.12 3.51 7.99 -2.91 -0.02 3.49 16 42 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 43 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 44 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 45 H 0.11 3.62 6.91 -2.91 -0.02 3.60 16 Total: -1.00 -69.65 355.58 3.01 -66.63 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.57 Total: 25.07 kcal Atomic # 6 Polarization: -44.16 SS G_CDS: 4.10 Total: -40.06 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -1.95 Total: -85.32 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -1.74 Total: -15.50 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -69.65 3.01 -66.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894357829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.461 kcal (2) G-P(sol) polarization free energy of solvation -69.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds