Wall clock time and date at job start Tue Mar 31 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 110.56412 * 2 1 4 4 C 1.54796 * 110.55889 * 237.16375 * 2 1 3 5 5 O 1.44423 * 104.80471 * 217.33712 * 4 2 1 6 6 C 1.44420 * 105.27621 * 40.58106 * 5 4 2 7 7 C 1.54476 * 104.80748 * 319.49116 * 6 5 4 8 8 H 1.09001 * 110.51288 * 265.20147 * 7 6 5 9 9 N 1.46891 * 110.51628 * 142.62309 * 7 6 5 10 10 C 1.46902 * 111.00156 * 88.30497 * 9 7 6 11 11 H 1.09000 * 109.46752 * 35.00473 * 10 9 7 12 12 C 1.52999 * 109.47123 * 155.00281 * 10 9 7 13 13 C 1.50699 * 109.47242 * 294.99871 * 12 10 9 14 14 H 1.08001 * 119.99794 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00199 * 179.97438 * 13 12 10 16 16 N 1.31519 * 119.99766 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00088 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47184 * 60.00230 * 17 15 13 19 19 H 1.48506 * 109.47074 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46968 * 300.00200 * 17 15 13 21 21 C 1.50700 * 109.47188 * 275.00501 * 10 9 7 22 22 C 1.38234 * 120.00260 * 139.99795 * 21 10 9 23 23 C 1.38234 * 120.00240 * 179.97438 * 22 21 10 24 24 C 1.38233 * 120.00037 * 0.26327 * 23 22 21 25 25 C 1.38239 * 119.99756 * 359.45918 * 24 23 22 26 26 C 1.38234 * 119.99992 * 0.53603 * 25 24 23 27 27 H 1.09002 * 109.47088 * 297.31740 * 1 2 3 28 28 H 1.08996 * 109.47715 * 57.32406 * 1 2 3 29 29 H 1.09005 * 109.46939 * 177.32474 * 1 2 3 30 30 H 1.09003 * 109.47560 * 182.68167 * 3 2 1 31 31 H 1.09001 * 109.47074 * 302.67789 * 3 2 1 32 32 H 1.08997 * 109.47229 * 62.67563 * 3 2 1 33 33 H 1.08999 * 110.30811 * 98.52908 * 4 2 1 34 34 H 1.09004 * 110.52245 * 336.24534 * 4 2 1 35 35 H 1.09000 * 110.36943 * 200.65930 * 6 5 4 36 36 H 1.08997 * 110.37139 * 78.32256 * 6 5 4 37 37 H 1.00903 * 110.99923 * 324.35285 * 9 7 6 38 38 H 1.08998 * 109.47030 * 55.00384 * 12 10 9 39 39 H 1.09001 * 109.46762 * 174.99934 * 12 10 9 40 40 H 0.96993 * 119.99693 * 180.02562 * 16 15 13 41 41 H 1.07999 * 119.99751 * 359.97438 * 22 21 10 42 42 H 1.08002 * 119.99744 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 44 44 H 1.08000 * 119.99962 * 180.30225 * 25 24 23 45 45 H 1.08002 * 120.00264 * 179.76377 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0674 1.4325 0.0000 4 6 2.0736 -0.7859 -1.2178 5 8 3.2426 -1.4734 -0.7214 6 6 2.8780 -1.9421 0.5951 7 6 2.0714 -0.7813 1.2181 8 1 2.7200 -0.1462 1.8215 9 7 0.9632 -1.3018 2.0297 10 6 1.3940 -1.5494 3.4121 11 1 2.1238 -0.7950 3.7058 12 6 0.1830 -1.4777 4.3444 13 6 -0.3689 -0.0754 4.3439 14 1 0.0972 0.6882 3.7389 15 6 -1.4696 0.2326 5.1151 16 7 -2.0375 -0.6974 5.8515 17 14 -2.1541 1.9706 5.1140 18 1 -2.5672 2.3391 3.7360 19 1 -3.3295 2.0403 6.0189 20 1 -1.1095 2.9143 5.5866 21 6 2.0199 -2.9171 3.5059 22 6 3.1461 -3.1101 4.2840 23 6 3.7198 -4.3647 4.3704 24 6 3.1706 -5.4254 3.6745 25 6 2.0410 -5.2337 2.9010 26 6 1.4672 -3.9790 2.8146 27 1 -0.3633 0.4716 0.9131 28 1 -0.3634 0.5548 -0.8650 29 1 -0.3633 -1.0266 -0.0480 30 1 3.1562 1.4122 -0.0481 31 1 1.6755 1.9676 -0.8650 32 1 1.7534 1.9384 0.9130 33 1 2.3484 -0.0997 -2.0188 34 1 1.3329 -1.5034 -1.5712 35 1 3.7709 -2.1442 1.1867 36 1 2.2600 -2.8370 0.5216 37 1 0.5739 -2.1364 1.6173 38 1 -0.5840 -2.1702 3.9976 39 1 0.4864 -1.7484 5.3557 40 1 -2.8121 -0.4808 6.3937 41 1 3.5777 -2.2805 4.8243 42 1 4.5999 -4.5153 4.9780 43 1 3.6214 -6.4047 3.7386 44 1 1.6090 -6.0634 2.3612 45 1 0.5869 -3.8284 2.2073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894357830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:04 Heat of formation + Delta-G solvation = -24.759103 kcal Electronic energy + Delta-G solvation = -24202.640395 eV Core-core repulsion = 20991.555372 eV Total energy + Delta-G solvation = -3211.085023 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.12507 -38.91303 -35.82984 -34.13519 -32.62686 -30.96437 -30.52921 -29.00461 -27.36074 -26.72742 -25.70209 -24.34710 -22.66479 -21.98640 -21.69908 -19.74826 -18.83975 -17.07474 -16.08490 -15.99731 -15.74911 -15.07299 -14.82309 -14.76525 -14.48265 -13.96735 -13.80819 -13.31119 -13.07716 -12.91701 -12.82948 -12.62339 -12.28219 -12.09595 -11.97956 -11.76812 -11.32970 -11.27002 -11.00789 -10.85074 -10.74906 -10.57875 -10.49613 -10.41854 -10.25642 -10.16284 -9.69976 -9.54397 -9.04588 -8.64603 -8.29093 -8.23687 -7.74987 -5.90639 -3.89145 1.66253 1.67617 3.38442 3.42965 3.45478 4.04464 4.11508 4.53701 4.62456 4.83491 4.91669 5.12413 5.14731 5.18581 5.25801 5.31894 5.33001 5.41466 5.46888 5.57342 5.75182 5.78423 5.81379 5.82172 5.88563 5.95838 5.97614 6.12388 6.19620 6.23946 6.26987 6.30987 6.38037 6.51833 6.72626 6.74339 6.79225 6.86733 6.92339 6.97860 7.29188 7.48569 7.62381 7.92252 7.96406 8.10047 8.52880 9.15555 9.72196 11.21129 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.010614 B = 0.007281 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.430014 B = 3844.925149 C = 5932.180707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.089 4.089 3 C -0.133 4.133 4 C 0.049 3.951 5 O -0.380 6.380 6 C 0.020 3.980 7 C 0.065 3.935 8 H 0.088 0.912 9 N -0.641 5.641 10 C 0.127 3.873 11 H 0.075 0.925 12 C 0.043 3.957 13 C -0.490 4.490 14 H 0.059 0.941 15 C 0.052 3.948 16 N -0.902 5.902 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.280 1.280 21 C -0.090 4.090 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.136 4.136 25 C -0.118 4.118 26 C -0.120 4.120 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.334 0.666 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.258 0.742 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.551 -4.266 -10.156 14.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.089 4.089 3 C -0.190 4.190 4 C -0.028 4.028 5 O -0.298 6.298 6 C -0.059 4.059 7 C -0.046 4.046 8 H 0.107 0.893 9 N -0.271 5.271 10 C 0.018 3.982 11 H 0.093 0.907 12 C 0.006 3.994 13 C -0.528 4.528 14 H 0.077 0.923 15 C -0.147 4.147 16 N -0.542 5.542 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.206 1.206 21 C -0.092 4.092 22 C -0.136 4.136 23 C -0.138 4.138 24 C -0.154 4.154 25 C -0.136 4.136 26 C -0.139 4.139 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.155 0.845 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.068 0.932 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.328 -3.681 -10.008 14.168 hybrid contribution -0.119 -0.033 0.156 0.199 sum 9.209 -3.714 -9.852 13.988 Atomic orbital electron populations 1.21544 0.92236 1.01711 1.02145 1.21943 0.97589 0.95621 0.93796 1.21786 1.00307 0.94812 1.02127 1.23660 0.87736 0.94802 0.96556 1.89065 1.35398 1.74061 1.31286 1.24332 1.00216 0.97257 0.84086 1.23085 0.91800 0.95216 0.94537 0.89336 1.60780 1.28861 1.36048 1.01426 1.21082 0.98678 0.89039 0.89432 0.90680 1.19073 0.90242 0.97748 0.92322 1.21047 1.12143 0.95099 1.24518 0.92253 1.24986 0.97125 0.96712 0.95922 1.69957 1.22458 1.32747 1.29078 0.86710 0.78341 0.85434 0.77747 1.20326 1.21677 1.20572 1.21174 0.94444 0.98277 0.95321 1.21077 0.96197 0.97195 0.99137 1.21083 0.99963 0.93196 0.99543 1.21009 0.97136 0.98563 0.98718 1.21050 0.96290 0.96910 0.99378 1.20943 0.99729 0.92688 1.00525 0.89813 0.94299 0.92974 0.92885 0.92863 0.91775 0.89641 0.92545 0.89749 0.92478 0.84478 0.96301 0.96345 0.93235 0.86288 0.86666 0.86805 0.86647 0.86361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 7.51 37.16 0.28 -1.43 16 2 C -0.09 -1.21 1.06 -152.77 -0.16 -1.37 16 3 C -0.13 -1.70 8.30 37.16 0.31 -1.39 16 4 C 0.05 0.63 6.75 38.10 0.26 0.89 16 5 O -0.38 -5.66 11.65 -35.23 -0.41 -6.08 16 6 C 0.02 0.28 6.30 37.93 0.24 0.52 16 7 C 0.07 0.97 3.04 -66.15 -0.20 0.77 16 8 H 0.09 1.40 7.07 -51.93 -0.37 1.03 16 9 N -0.64 -10.86 4.09 -99.32 -0.41 -11.27 16 10 C 0.13 2.39 2.17 -68.86 -0.15 2.24 16 11 H 0.08 1.45 7.32 -51.93 -0.38 1.07 16 12 C 0.04 1.06 4.63 -27.88 -0.13 0.93 16 13 C -0.49 -13.12 8.84 -34.44 -0.30 -13.42 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 16 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 17 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.09 -1.50 4.05 -104.62 -0.42 -1.93 16 22 C -0.12 -1.82 9.67 -39.58 -0.38 -2.20 16 23 C -0.12 -1.64 10.05 -39.58 -0.40 -2.03 16 24 C -0.14 -1.79 10.05 -39.58 -0.40 -2.18 16 25 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 26 C -0.12 -1.86 8.05 -39.58 -0.32 -2.18 16 27 H 0.08 1.45 7.86 -51.93 -0.41 1.05 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.74 7.49 -51.93 -0.39 0.35 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.97 7.88 -51.93 -0.41 0.56 16 34 H 0.06 0.68 7.84 -51.93 -0.41 0.28 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 0.81 6.65 -51.93 -0.35 0.46 16 37 H 0.33 5.41 5.30 -39.29 -0.21 5.20 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.12 1.74 8.04 -52.49 -0.42 1.32 16 42 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.78 6.51 -52.49 -0.34 1.43 16 LS Contribution 355.03 15.07 5.35 5.35 Total: -1.00 -29.30 355.03 -9.48 -38.77 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.45 Total: 6.13 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -2.28 Total: -23.45 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.33 Total: -37.29 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.41 Total: -6.08 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.30 -9.48 -38.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894357830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.013 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds