Wall clock time and date at job start Tue Mar 31 2020 06:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 110.56412 * 2 1 4 4 C 1.54796 * 110.55889 * 237.16375 * 2 1 3 5 5 O 1.44423 * 104.80471 * 217.33712 * 4 2 1 6 6 C 1.44420 * 105.27621 * 40.58106 * 5 4 2 7 7 C 1.54476 * 104.80748 * 319.49116 * 6 5 4 8 8 H 1.09001 * 110.51288 * 265.20147 * 7 6 5 9 9 N 1.46891 * 110.51628 * 142.62309 * 7 6 5 10 10 C 1.46902 * 111.00156 * 88.30497 * 9 7 6 11 11 H 1.09000 * 109.46752 * 35.00473 * 10 9 7 12 12 C 1.52999 * 109.47123 * 155.00281 * 10 9 7 13 13 C 1.50699 * 109.47242 * 294.99871 * 12 10 9 14 14 H 1.08001 * 119.99794 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00199 * 179.97438 * 13 12 10 16 16 N 1.31519 * 119.99766 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00088 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47184 * 60.00230 * 17 15 13 19 19 H 1.48506 * 109.47074 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46968 * 300.00200 * 17 15 13 21 21 C 1.50700 * 109.47188 * 275.00501 * 10 9 7 22 22 C 1.38234 * 120.00260 * 139.99795 * 21 10 9 23 23 C 1.38234 * 120.00240 * 179.97438 * 22 21 10 24 24 C 1.38233 * 120.00037 * 0.26327 * 23 22 21 25 25 C 1.38239 * 119.99756 * 359.45918 * 24 23 22 26 26 C 1.38234 * 119.99992 * 0.53603 * 25 24 23 27 27 H 1.09002 * 109.47088 * 297.31740 * 1 2 3 28 28 H 1.08996 * 109.47715 * 57.32406 * 1 2 3 29 29 H 1.09005 * 109.46939 * 177.32474 * 1 2 3 30 30 H 1.09003 * 109.47560 * 182.68167 * 3 2 1 31 31 H 1.09001 * 109.47074 * 302.67789 * 3 2 1 32 32 H 1.08997 * 109.47229 * 62.67563 * 3 2 1 33 33 H 1.08999 * 110.30811 * 98.52908 * 4 2 1 34 34 H 1.09004 * 110.52245 * 336.24534 * 4 2 1 35 35 H 1.09000 * 110.36943 * 200.65930 * 6 5 4 36 36 H 1.08997 * 110.37139 * 78.32256 * 6 5 4 37 37 H 1.00903 * 110.99923 * 324.35285 * 9 7 6 38 38 H 1.08998 * 109.47030 * 55.00384 * 12 10 9 39 39 H 1.09001 * 109.46762 * 174.99934 * 12 10 9 40 40 H 0.96993 * 119.99693 * 180.02562 * 16 15 13 41 41 H 1.07999 * 119.99751 * 359.97438 * 22 21 10 42 42 H 1.08002 * 119.99744 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 44 44 H 1.08000 * 119.99962 * 180.30225 * 25 24 23 45 45 H 1.08002 * 120.00264 * 179.76377 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0674 1.4325 0.0000 4 6 2.0736 -0.7859 -1.2178 5 8 3.2426 -1.4734 -0.7214 6 6 2.8780 -1.9421 0.5951 7 6 2.0714 -0.7813 1.2181 8 1 2.7200 -0.1462 1.8215 9 7 0.9632 -1.3018 2.0297 10 6 1.3940 -1.5494 3.4121 11 1 2.1238 -0.7950 3.7058 12 6 0.1830 -1.4777 4.3444 13 6 -0.3689 -0.0754 4.3439 14 1 0.0972 0.6882 3.7389 15 6 -1.4696 0.2326 5.1151 16 7 -2.0375 -0.6974 5.8515 17 14 -2.1541 1.9706 5.1140 18 1 -2.5672 2.3391 3.7360 19 1 -3.3295 2.0403 6.0189 20 1 -1.1095 2.9143 5.5866 21 6 2.0199 -2.9171 3.5059 22 6 3.1461 -3.1101 4.2840 23 6 3.7198 -4.3647 4.3704 24 6 3.1706 -5.4254 3.6745 25 6 2.0410 -5.2337 2.9010 26 6 1.4672 -3.9790 2.8146 27 1 -0.3633 0.4716 0.9131 28 1 -0.3634 0.5548 -0.8650 29 1 -0.3633 -1.0266 -0.0480 30 1 3.1562 1.4122 -0.0481 31 1 1.6755 1.9676 -0.8650 32 1 1.7534 1.9384 0.9130 33 1 2.3484 -0.0997 -2.0188 34 1 1.3329 -1.5034 -1.5712 35 1 3.7709 -2.1442 1.1867 36 1 2.2600 -2.8370 0.5216 37 1 0.5739 -2.1364 1.6173 38 1 -0.5840 -2.1702 3.9976 39 1 0.4864 -1.7484 5.3557 40 1 -2.8121 -0.4808 6.3937 41 1 3.5777 -2.2805 4.8243 42 1 4.5999 -4.5153 4.9780 43 1 3.6214 -6.4047 3.7386 44 1 1.6090 -6.0634 2.3612 45 1 0.5869 -3.8284 2.2073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894357830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:03 Heat of formation + Delta-G solvation = -40.726832 kcal Electronic energy + Delta-G solvation = -24203.332808 eV Core-core repulsion = 20991.555372 eV Total energy + Delta-G solvation = -3211.777436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.32340 -40.07188 -37.19423 -35.40995 -34.57117 -32.25556 -31.67944 -30.58898 -28.65068 -28.00925 -26.81618 -26.02778 -23.85751 -23.56913 -22.85027 -21.18577 -20.01133 -18.60343 -17.79402 -17.14816 -16.99068 -16.46601 -16.22112 -16.00085 -15.95392 -15.22097 -15.04850 -14.55202 -14.33812 -14.17681 -14.08533 -14.02522 -13.72186 -13.61786 -13.40757 -12.86530 -12.80311 -12.75888 -12.48486 -12.44988 -12.23631 -12.03029 -11.83545 -11.75081 -11.60073 -11.50707 -11.27416 -11.07454 -10.71113 -10.47176 -9.77676 -9.52078 -9.09656 -8.07976 -6.12928 0.50944 0.53504 1.42693 1.44803 1.52054 2.48011 2.89324 2.97254 3.24995 3.41146 3.66877 3.79319 3.93061 4.02005 4.03340 4.15556 4.19642 4.22708 4.31518 4.46772 4.52245 4.68114 4.72879 4.75339 4.76962 4.79794 4.82476 4.91316 5.00830 5.10923 5.13783 5.16399 5.18895 5.24171 5.41556 5.49894 5.59971 5.62542 5.64306 5.67597 5.70496 5.84676 5.91061 6.16586 6.31315 6.44336 6.61402 7.00405 7.52590 9.03833 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.010614 B = 0.007281 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.430014 B = 3844.925149 C = 5932.180707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.130 4.130 4 C 0.052 3.948 5 O -0.392 6.392 6 C 0.031 3.969 7 C 0.067 3.933 8 H 0.076 0.924 9 N -0.648 5.648 10 C 0.145 3.855 11 H 0.064 0.936 12 C 0.055 3.945 13 C -0.494 4.494 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.940 5.940 17 Si 0.954 3.046 18 H -0.269 1.269 19 H -0.290 1.290 20 H -0.272 1.272 21 C -0.110 4.110 22 C -0.134 4.134 23 C -0.120 4.120 24 C -0.131 4.131 25 C -0.120 4.120 26 C -0.132 4.132 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.338 0.662 38 H -0.009 1.009 39 H -0.015 1.015 40 H 0.258 0.742 41 H 0.118 0.882 42 H 0.142 0.858 43 H 0.147 0.853 44 H 0.141 0.859 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.686 -4.651 -11.806 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.187 4.187 4 C -0.024 4.024 5 O -0.310 6.310 6 C -0.048 4.048 7 C -0.045 4.045 8 H 0.095 0.905 9 N -0.279 5.279 10 C 0.035 3.965 11 H 0.082 0.918 12 C 0.017 3.983 13 C -0.532 4.532 14 H 0.078 0.922 15 C -0.199 4.199 16 N -0.582 5.582 17 Si 0.780 3.220 18 H -0.194 1.194 19 H -0.216 1.216 20 H -0.197 1.197 21 C -0.112 4.112 22 C -0.152 4.152 23 C -0.138 4.138 24 C -0.149 4.149 25 C -0.138 4.138 26 C -0.150 4.150 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.125 0.875 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.159 0.841 38 H 0.009 0.991 39 H 0.003 0.997 40 H 0.066 0.934 41 H 0.136 0.864 42 H 0.160 0.840 43 H 0.165 0.835 44 H 0.159 0.841 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.480 -4.059 -11.677 16.206 hybrid contribution -0.441 0.023 0.669 0.802 sum 10.039 -4.036 -11.007 15.435 Atomic orbital electron populations 1.21445 0.92781 1.01504 1.01259 1.21954 0.97060 0.96216 0.93622 1.21758 1.00632 0.94157 1.02155 1.23755 0.87335 0.95079 0.96268 1.89056 1.36392 1.74307 1.31231 1.24162 0.99866 0.96778 0.83963 1.23055 0.91180 0.95572 0.94652 0.90541 1.60655 1.30075 1.36366 1.00831 1.20542 0.95843 0.90685 0.89438 0.91760 1.18838 0.91745 0.95817 0.91873 1.21386 1.11897 0.96176 1.23742 0.92204 1.25818 0.97701 1.00680 0.95739 1.70098 1.23071 1.34884 1.30187 0.85674 0.77643 0.80717 0.77991 1.19441 1.21595 1.19694 1.20928 0.95682 0.97253 0.97297 1.21226 0.96310 0.98465 0.99236 1.21411 1.00535 0.92351 0.99475 1.21438 0.96427 0.99793 0.97228 1.21381 0.96371 0.96697 0.99330 1.21021 0.99905 0.93369 1.00746 0.93240 0.92208 0.93174 0.92409 0.90881 0.93503 0.87532 0.91627 0.89983 0.92232 0.84086 0.99052 0.99659 0.93368 0.86364 0.83984 0.83515 0.84089 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.15 7.51 71.98 0.54 -2.61 16 2 C -0.09 -2.29 1.06 -51.05 -0.05 -2.35 16 3 C -0.13 -3.14 8.30 71.98 0.60 -2.54 16 4 C 0.05 1.21 6.75 72.60 0.49 1.70 16 5 O -0.39 -10.92 11.65 -148.98 -1.74 -12.66 16 6 C 0.03 0.86 6.30 72.48 0.46 1.31 16 7 C 0.07 1.99 3.04 45.93 0.14 2.13 16 8 H 0.08 2.46 7.07 -2.39 -0.02 2.45 16 9 N -0.65 -22.66 4.09 -468.13 -1.92 -24.57 16 10 C 0.14 5.71 2.17 44.17 0.10 5.80 16 11 H 0.06 2.62 7.32 -2.39 -0.02 2.60 16 12 C 0.05 2.81 4.63 29.85 0.14 2.95 16 13 C -0.49 -27.42 8.84 25.60 0.23 -27.19 16 14 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 15 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 16 N -0.94 -57.64 13.29 21.45 0.28 -57.35 16 17 Si 0.95 45.04 29.54 68.60 2.03 47.06 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 19 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 C -0.11 -3.74 4.05 -19.86 -0.08 -3.82 16 22 C -0.13 -4.14 9.67 22.27 0.22 -3.93 16 23 C -0.12 -3.04 10.05 22.27 0.22 -2.81 16 24 C -0.13 -3.06 10.05 22.27 0.22 -2.83 16 25 C -0.12 -3.05 10.05 22.27 0.22 -2.83 16 26 C -0.13 -4.06 8.05 22.27 0.18 -3.88 16 27 H 0.05 1.73 7.86 -2.39 -0.02 1.71 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.39 7.49 -2.38 -0.02 1.38 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.11 2.05 7.88 -2.39 -0.02 2.03 16 34 H 0.07 1.42 7.84 -2.38 -0.02 1.40 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.06 1.63 6.65 -2.39 -0.02 1.61 16 37 H 0.34 11.24 5.30 -89.69 -0.48 10.76 16 38 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 39 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 40 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.12 3.55 8.04 -2.91 -0.02 3.53 16 42 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 44 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 45 H 0.12 3.51 6.51 -2.91 -0.02 3.50 16 Total: -1.00 -64.69 355.03 3.22 -61.47 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.48 Total: 26.67 kcal Atomic # 6 Polarization: -44.70 SS G_CDS: 4.08 Total: -40.62 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -1.63 Total: -81.92 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -1.74 Total: -12.66 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.69 3.22 -61.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894357830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.747 kcal (2) G-P(sol) polarization free energy of solvation -64.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds