Wall clock time and date at job start Tue Mar 31 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 110.56520 * 2 1 4 4 C 1.54479 * 110.51039 * 237.32222 * 2 1 3 5 5 O 1.44428 * 104.80104 * 217.37848 * 4 2 1 6 6 C 1.44424 * 105.27604 * 40.51182 * 5 4 2 7 7 C 1.54479 * 104.80150 * 319.48811 * 6 5 4 8 8 H 1.08999 * 110.50933 * 142.76572 * 7 6 5 9 9 N 1.46909 * 110.50887 * 265.33527 * 7 6 5 10 10 C 1.46897 * 110.99673 * 273.54789 * 9 7 6 11 11 H 1.09004 * 109.47413 * 324.99940 * 10 9 7 12 12 C 1.52999 * 109.47151 * 205.00096 * 10 9 7 13 13 C 1.50701 * 109.47048 * 64.99967 * 12 10 9 14 14 H 1.08005 * 120.00127 * 0.02562 * 13 12 10 15 15 C 1.37879 * 120.00350 * 180.02562 * 13 12 10 16 16 N 1.31515 * 119.99627 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00536 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47526 * 89.99714 * 17 15 13 19 19 H 1.48500 * 109.47675 * 209.99978 * 17 15 13 20 20 H 1.48507 * 109.46979 * 329.99954 * 17 15 13 21 21 C 1.50703 * 109.47564 * 85.00202 * 10 9 7 22 22 C 1.38234 * 120.00257 * 220.00193 * 21 10 9 23 23 C 1.38238 * 119.99675 * 180.27927 * 22 21 10 24 24 C 1.38229 * 120.00124 * 359.45911 * 23 22 21 25 25 C 1.38234 * 119.99957 * 0.56005 * 24 23 22 26 26 C 1.38234 * 119.99503 * 40.01793 * 21 10 9 27 27 H 1.08999 * 109.46896 * 297.32322 * 1 2 3 28 28 H 1.09006 * 109.47153 * 57.31622 * 1 2 3 29 29 H 1.08990 * 109.47357 * 177.32140 * 1 2 3 30 30 H 1.09001 * 109.46992 * 182.68006 * 3 2 1 31 31 H 1.08999 * 109.47327 * 302.67525 * 3 2 1 32 32 H 1.09004 * 109.47173 * 62.68196 * 3 2 1 33 33 H 1.08995 * 110.37447 * 98.54645 * 4 2 1 34 34 H 1.08994 * 110.46484 * 336.25484 * 4 2 1 35 35 H 1.09006 * 110.36795 * 200.65569 * 6 5 4 36 36 H 1.08993 * 110.46538 * 78.36843 * 6 5 4 37 37 H 1.00899 * 110.99729 * 37.49758 * 9 7 6 38 38 H 1.09004 * 109.47578 * 185.00171 * 12 10 9 39 39 H 1.08998 * 109.47281 * 305.00066 * 12 10 9 40 40 H 0.97001 * 120.00270 * 180.02562 * 16 15 13 41 41 H 1.08002 * 119.99744 * 359.97438 * 22 21 10 42 42 H 1.08004 * 119.99577 * 179.72816 * 23 22 21 43 43 H 1.07999 * 119.99961 * 180.28392 * 24 23 22 44 44 H 1.08001 * 120.00274 * 179.72697 * 25 24 23 45 45 H 1.07997 * 120.00460 * 0.02562 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0674 1.4325 0.0000 4 6 2.0712 -0.7812 -1.2179 5 8 3.2398 -1.4714 -0.7238 6 6 2.8756 -1.9422 0.5921 7 6 2.0713 -0.7814 1.2180 8 1 1.2505 -1.1677 1.8222 9 7 2.9482 0.0735 2.0296 10 6 3.0663 -0.4437 3.3995 11 1 2.1179 -0.8867 3.7037 12 6 3.4214 0.7026 4.3485 13 6 2.2835 1.6897 4.3918 14 1 1.3956 1.5166 3.8017 15 6 2.3759 2.8140 5.1846 16 7 3.4568 3.0246 5.9035 17 14 0.9652 4.0372 5.2389 18 1 0.0207 3.6561 6.3196 19 1 1.4990 5.3971 5.5048 20 1 0.2541 4.0308 3.9351 21 6 4.1489 -1.4909 3.4495 22 6 3.9713 -2.6329 4.2080 23 6 4.9668 -3.5908 4.2584 24 6 6.1351 -3.4118 3.5416 25 6 6.3128 -2.2696 2.7835 26 6 5.3196 -1.3093 2.7373 27 1 -0.3633 0.4717 0.9130 28 1 -0.3634 0.5550 -0.8650 29 1 -0.3633 -1.0264 -0.0480 30 1 3.1562 1.4120 -0.0481 31 1 1.6756 1.9676 -0.8650 32 1 1.7535 1.9384 0.9131 33 1 2.3464 -0.0939 -2.0178 34 1 1.3293 -1.4968 -1.5719 35 1 3.7688 -2.1468 1.1825 36 1 2.2569 -2.8365 0.5191 37 1 3.8561 0.1710 1.6004 38 1 3.5962 0.3056 5.3485 39 1 4.3226 1.2024 3.9934 40 1 3.5217 3.8153 6.4617 41 1 3.0569 -2.7745 4.7649 42 1 4.8299 -4.4809 4.8545 43 1 6.9109 -4.1623 3.5774 44 1 7.2274 -2.1277 2.2270 45 1 5.4586 -0.4168 2.1453 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894357831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:06 Heat of formation + Delta-G solvation = -24.283679 kcal Electronic energy + Delta-G solvation = -24268.194439 eV Core-core repulsion = 21057.130032 eV Total energy + Delta-G solvation = -3211.064407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17919 -38.88497 -35.72243 -34.16182 -32.61541 -30.91381 -30.48596 -29.02652 -27.52895 -26.56926 -25.75674 -24.33984 -22.60216 -21.97563 -21.59133 -19.71067 -18.93044 -17.01374 -16.10401 -15.95208 -15.69489 -15.18041 -14.78963 -14.67429 -14.46107 -13.91333 -13.80794 -13.35048 -13.10179 -12.99117 -12.93177 -12.51901 -12.27532 -12.08836 -11.94241 -11.50698 -11.28172 -11.24025 -11.00202 -10.78866 -10.74793 -10.63284 -10.49180 -10.43561 -10.31654 -10.13622 -9.75721 -9.48827 -9.01537 -8.62014 -8.27599 -8.19650 -7.68302 -5.89352 -3.87679 1.67971 1.69210 3.37371 3.44186 3.47779 4.09298 4.14386 4.54746 4.58698 4.78032 5.02675 5.15183 5.16186 5.19330 5.26607 5.28530 5.43747 5.45900 5.48840 5.55969 5.67972 5.78873 5.80361 5.82375 5.88192 5.90153 6.01280 6.11329 6.20589 6.23851 6.28988 6.35622 6.39765 6.55921 6.74669 6.77077 6.78309 6.89940 6.95246 6.99975 7.30766 7.52608 7.65507 7.95851 8.01273 8.12477 8.54604 9.17143 9.73536 11.22469 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.010774 B = 0.007301 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.324174 B = 3834.167266 C = 5858.038146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 C -0.118 4.118 4 C 0.049 3.951 5 O -0.375 6.375 6 C 0.006 3.994 7 C 0.066 3.934 8 H 0.088 0.912 9 N -0.641 5.641 10 C 0.127 3.873 11 H 0.074 0.926 12 C 0.043 3.957 13 C -0.488 4.488 14 H 0.059 0.941 15 C 0.052 3.948 16 N -0.902 5.902 17 Si 0.889 3.111 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.274 1.274 21 C -0.092 4.092 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.136 4.136 25 C -0.118 4.118 26 C -0.118 4.118 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.338 0.662 38 H 0.018 0.982 39 H 0.019 0.981 40 H 0.257 0.743 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.655 -11.208 -10.450 15.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.089 4.089 3 C -0.175 4.175 4 C -0.028 4.028 5 O -0.293 6.293 6 C -0.072 4.072 7 C -0.046 4.046 8 H 0.106 0.894 9 N -0.271 5.271 10 C 0.017 3.983 11 H 0.092 0.908 12 C 0.006 3.994 13 C -0.527 4.527 14 H 0.078 0.922 15 C -0.148 4.148 16 N -0.542 5.542 17 Si 0.717 3.283 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.199 1.199 21 C -0.093 4.093 22 C -0.137 4.137 23 C -0.139 4.139 24 C -0.155 4.155 25 C -0.136 4.136 26 C -0.137 4.137 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.069 0.931 37 H 0.159 0.841 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.067 0.933 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.877 -10.627 -10.281 14.812 hybrid contribution -0.259 -0.113 0.151 0.320 sum -1.136 -10.739 -10.130 14.807 Atomic orbital electron populations 1.21795 0.93884 1.01142 1.02429 1.21932 0.95774 0.97554 0.93658 1.21541 1.00746 0.93354 1.01869 1.23599 0.87861 0.94638 0.96660 1.89096 1.35301 1.73735 1.31213 1.24442 1.00825 0.97215 0.84757 1.23064 0.96372 0.90743 0.94429 0.89383 1.60769 1.16972 1.47961 1.01378 1.21081 0.94109 0.93217 0.89888 0.90765 1.19078 0.97426 0.90789 0.92132 1.21083 1.02077 1.05294 1.24215 0.92228 1.24988 0.95642 0.98120 0.96045 1.69967 1.27288 1.27954 1.29015 0.86651 0.82676 0.80789 0.78163 1.21098 1.21578 1.19908 1.21193 0.97160 0.95764 0.95232 1.21075 0.99376 0.93952 0.99331 1.21079 0.94139 0.99135 0.99500 1.21013 0.97724 0.98024 0.98693 1.21067 0.98757 0.94367 0.99374 1.20976 0.93552 0.98999 1.00157 0.91579 0.92710 0.93159 0.92678 0.94413 0.90022 0.89463 0.92932 0.88443 0.93139 0.84056 0.96359 0.96265 0.93307 0.86291 0.86674 0.86786 0.86565 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.32 37.16 0.31 -1.33 16 2 C -0.09 -1.20 1.05 -152.94 -0.16 -1.36 16 3 C -0.12 -1.76 7.48 37.16 0.28 -1.48 16 4 C 0.05 0.63 6.73 37.93 0.26 0.88 16 5 O -0.37 -5.68 11.65 -35.23 -0.41 -6.09 16 6 C 0.01 0.09 6.93 37.93 0.26 0.35 16 7 C 0.07 0.99 3.04 -66.14 -0.20 0.79 16 8 H 0.09 1.34 7.11 -51.93 -0.37 0.97 16 9 N -0.64 -11.26 4.12 -99.31 -0.41 -11.66 16 10 C 0.13 2.42 2.17 -68.87 -0.15 2.27 16 11 H 0.07 1.44 7.34 -51.93 -0.38 1.06 16 12 C 0.04 1.06 4.63 -27.88 -0.13 0.93 16 13 C -0.49 -13.19 8.84 -34.44 -0.30 -13.49 16 14 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 15 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 16 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 17 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.09 -1.56 3.53 -104.62 -0.37 -1.93 16 22 C -0.12 -1.85 9.67 -39.58 -0.38 -2.24 16 23 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 24 C -0.14 -1.82 10.05 -39.59 -0.40 -2.22 16 25 C -0.12 -1.68 10.05 -39.58 -0.40 -2.07 16 26 C -0.12 -1.91 7.49 -39.58 -0.30 -2.20 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.05 0.85 7.48 -51.93 -0.39 0.46 16 31 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 1.45 7.86 -51.93 -0.41 1.04 16 33 H 0.09 1.02 7.87 -51.93 -0.41 0.61 16 34 H 0.05 0.60 7.83 -51.93 -0.41 0.19 16 35 H 0.10 1.48 4.76 -51.93 -0.25 1.24 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.34 5.90 5.57 -39.29 -0.22 5.68 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.12 1.74 8.04 -52.49 -0.42 1.32 16 42 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 43 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 45 H 0.12 1.94 6.51 -52.49 -0.34 1.59 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -29.52 352.92 -9.32 -38.85 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -7.36 Total: 6.93 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -2.18 Total: -23.80 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.33 Total: -37.86 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.41 Total: -6.09 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.52 -9.32 -38.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894357831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.561 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds