Wall clock time and date at job start Tue Mar 31 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 110.56520 * 2 1 4 4 C 1.54479 * 110.51039 * 237.32222 * 2 1 3 5 5 O 1.44428 * 104.80104 * 217.37848 * 4 2 1 6 6 C 1.44424 * 105.27604 * 40.51182 * 5 4 2 7 7 C 1.54479 * 104.80150 * 319.48811 * 6 5 4 8 8 H 1.08999 * 110.50933 * 142.76572 * 7 6 5 9 9 N 1.46909 * 110.50887 * 265.33527 * 7 6 5 10 10 C 1.46897 * 110.99673 * 273.54789 * 9 7 6 11 11 H 1.09004 * 109.47413 * 324.99940 * 10 9 7 12 12 C 1.52999 * 109.47151 * 205.00096 * 10 9 7 13 13 C 1.50701 * 109.47048 * 64.99967 * 12 10 9 14 14 H 1.08005 * 120.00127 * 0.02562 * 13 12 10 15 15 C 1.37879 * 120.00350 * 180.02562 * 13 12 10 16 16 N 1.31515 * 119.99627 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00536 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47526 * 89.99714 * 17 15 13 19 19 H 1.48500 * 109.47675 * 209.99978 * 17 15 13 20 20 H 1.48507 * 109.46979 * 329.99954 * 17 15 13 21 21 C 1.50703 * 109.47564 * 85.00202 * 10 9 7 22 22 C 1.38234 * 120.00257 * 220.00193 * 21 10 9 23 23 C 1.38238 * 119.99675 * 180.27927 * 22 21 10 24 24 C 1.38229 * 120.00124 * 359.45911 * 23 22 21 25 25 C 1.38234 * 119.99957 * 0.56005 * 24 23 22 26 26 C 1.38234 * 119.99503 * 40.01793 * 21 10 9 27 27 H 1.08999 * 109.46896 * 297.32322 * 1 2 3 28 28 H 1.09006 * 109.47153 * 57.31622 * 1 2 3 29 29 H 1.08990 * 109.47357 * 177.32140 * 1 2 3 30 30 H 1.09001 * 109.46992 * 182.68006 * 3 2 1 31 31 H 1.08999 * 109.47327 * 302.67525 * 3 2 1 32 32 H 1.09004 * 109.47173 * 62.68196 * 3 2 1 33 33 H 1.08995 * 110.37447 * 98.54645 * 4 2 1 34 34 H 1.08994 * 110.46484 * 336.25484 * 4 2 1 35 35 H 1.09006 * 110.36795 * 200.65569 * 6 5 4 36 36 H 1.08993 * 110.46538 * 78.36843 * 6 5 4 37 37 H 1.00899 * 110.99729 * 37.49758 * 9 7 6 38 38 H 1.09004 * 109.47578 * 185.00171 * 12 10 9 39 39 H 1.08998 * 109.47281 * 305.00066 * 12 10 9 40 40 H 0.97001 * 120.00270 * 180.02562 * 16 15 13 41 41 H 1.08002 * 119.99744 * 359.97438 * 22 21 10 42 42 H 1.08004 * 119.99577 * 179.72816 * 23 22 21 43 43 H 1.07999 * 119.99961 * 180.28392 * 24 23 22 44 44 H 1.08001 * 120.00274 * 179.72697 * 25 24 23 45 45 H 1.07997 * 120.00460 * 0.02562 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0674 1.4325 0.0000 4 6 2.0712 -0.7812 -1.2179 5 8 3.2398 -1.4714 -0.7238 6 6 2.8756 -1.9422 0.5921 7 6 2.0713 -0.7814 1.2180 8 1 1.2505 -1.1677 1.8222 9 7 2.9482 0.0735 2.0296 10 6 3.0663 -0.4437 3.3995 11 1 2.1179 -0.8867 3.7037 12 6 3.4214 0.7026 4.3485 13 6 2.2835 1.6897 4.3918 14 1 1.3956 1.5166 3.8017 15 6 2.3759 2.8140 5.1846 16 7 3.4568 3.0246 5.9035 17 14 0.9652 4.0372 5.2389 18 1 0.0207 3.6561 6.3196 19 1 1.4990 5.3971 5.5048 20 1 0.2541 4.0308 3.9351 21 6 4.1489 -1.4909 3.4495 22 6 3.9713 -2.6329 4.2080 23 6 4.9668 -3.5908 4.2584 24 6 6.1351 -3.4118 3.5416 25 6 6.3128 -2.2696 2.7835 26 6 5.3196 -1.3093 2.7373 27 1 -0.3633 0.4717 0.9130 28 1 -0.3634 0.5550 -0.8650 29 1 -0.3633 -1.0264 -0.0480 30 1 3.1562 1.4120 -0.0481 31 1 1.6756 1.9676 -0.8650 32 1 1.7535 1.9384 0.9131 33 1 2.3464 -0.0939 -2.0178 34 1 1.3293 -1.4968 -1.5719 35 1 3.7688 -2.1468 1.1825 36 1 2.2569 -2.8365 0.5191 37 1 3.8561 0.1710 1.6004 38 1 3.5962 0.3056 5.3485 39 1 4.3226 1.2024 3.9934 40 1 3.5217 3.8153 6.4617 41 1 3.0569 -2.7745 4.7649 42 1 4.8299 -4.4809 4.8545 43 1 6.9109 -4.1623 3.5774 44 1 7.2274 -2.1277 2.2270 45 1 5.4586 -0.4168 2.1453 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894357831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:06 Heat of formation + Delta-G solvation = -40.747095 kcal Electronic energy + Delta-G solvation = -24268.908346 eV Core-core repulsion = 21057.130032 eV Total energy + Delta-G solvation = -3211.778314 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.37923 -40.05599 -37.11665 -35.39776 -34.59304 -32.21069 -31.66514 -30.62135 -28.83980 -27.87302 -26.82487 -26.03509 -23.81105 -23.58444 -22.74843 -21.15565 -20.10221 -18.59430 -17.76372 -17.19051 -16.86197 -16.45538 -16.39463 -15.99521 -15.83710 -15.15677 -15.05212 -14.58013 -14.40251 -14.23488 -14.15538 -13.95516 -13.87831 -13.45142 -13.33706 -12.83583 -12.77072 -12.66422 -12.50716 -12.34461 -12.25715 -11.94414 -11.82168 -11.74070 -11.73031 -11.51829 -11.32003 -11.06811 -10.69990 -10.48157 -9.77691 -9.48838 -9.04956 -8.08291 -6.13364 0.50044 0.52625 1.41808 1.42995 1.53963 2.47720 2.91977 3.06051 3.21169 3.33058 3.65170 3.89540 3.94947 4.02745 4.09832 4.13512 4.18820 4.31058 4.33089 4.46598 4.51179 4.65282 4.69507 4.76209 4.77743 4.78925 4.83286 4.92267 4.99878 5.12548 5.14615 5.16981 5.18152 5.28920 5.42859 5.49598 5.59543 5.62566 5.63793 5.65864 5.70193 5.87395 5.90517 6.15646 6.33433 6.46803 6.61798 7.00160 7.52153 9.03799 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.010774 B = 0.007301 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.324174 B = 3834.167266 C = 5858.038146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.112 4.112 4 C 0.052 3.948 5 O -0.392 6.392 6 C 0.014 3.986 7 C 0.064 3.936 8 H 0.085 0.915 9 N -0.652 5.652 10 C 0.144 3.856 11 H 0.068 0.932 12 C 0.054 3.946 13 C -0.492 4.492 14 H 0.061 0.939 15 C -0.005 4.005 16 N -0.941 5.941 17 Si 0.955 3.045 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.265 1.265 21 C -0.110 4.110 22 C -0.132 4.132 23 C -0.118 4.118 24 C -0.130 4.130 25 C -0.121 4.121 26 C -0.132 4.132 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.336 0.664 38 H -0.014 1.014 39 H -0.013 1.013 40 H 0.257 0.743 41 H 0.122 0.878 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.138 0.862 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.349 -12.889 -11.917 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 C -0.169 4.169 4 C -0.025 4.025 5 O -0.311 6.311 6 C -0.064 4.064 7 C -0.047 4.047 8 H 0.103 0.897 9 N -0.282 5.282 10 C 0.034 3.966 11 H 0.086 0.914 12 C 0.017 3.983 13 C -0.531 4.531 14 H 0.079 0.921 15 C -0.201 4.201 16 N -0.583 5.583 17 Si 0.781 3.219 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.189 1.189 21 C -0.112 4.112 22 C -0.151 4.151 23 C -0.136 4.136 24 C -0.148 4.148 25 C -0.139 4.139 26 C -0.150 4.150 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.157 0.843 38 H 0.004 0.996 39 H 0.006 0.994 40 H 0.066 0.934 41 H 0.140 0.860 42 H 0.163 0.837 43 H 0.166 0.834 44 H 0.156 0.844 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.589 -12.322 -11.764 17.110 hybrid contribution 0.018 0.370 0.597 0.703 sum -1.571 -11.952 -11.167 16.432 Atomic orbital electron populations 1.21761 0.92420 1.02343 1.02291 1.21945 0.96901 0.96451 0.93516 1.21444 1.00013 0.94440 1.01022 1.23712 0.87593 0.95037 0.96131 1.89079 1.36643 1.74073 1.31307 1.24321 1.00445 0.97206 0.84432 1.23104 0.95814 0.91123 0.94622 0.89677 1.60654 1.17286 1.49209 1.01006 1.20560 0.94634 0.91712 0.89692 0.91352 1.18845 0.95452 0.92194 0.91839 1.21417 1.02523 1.05660 1.23463 0.92115 1.25844 0.98155 1.00246 0.95858 1.70111 1.29445 1.28673 1.30098 0.85590 0.79574 0.78102 0.78600 1.20256 1.21538 1.18893 1.20941 0.97002 0.96087 0.97153 1.21241 1.00431 0.94158 0.99252 1.21429 0.93508 0.99411 0.99276 1.21437 0.98184 0.98051 0.97137 1.21369 0.98900 0.94135 0.99529 1.20994 0.94082 0.99456 1.00514 0.93433 0.90939 0.91493 0.93934 0.92296 0.93393 0.88267 0.90753 0.89380 0.91581 0.84272 0.99559 0.99424 0.93388 0.85985 0.83705 0.83416 0.84370 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.32 71.98 0.60 -2.32 16 2 C -0.09 -2.27 1.05 -51.17 -0.05 -2.33 16 3 C -0.11 -3.32 7.48 71.98 0.54 -2.78 16 4 C 0.05 1.19 6.73 72.48 0.49 1.68 16 5 O -0.39 -11.27 11.65 -148.98 -1.74 -13.00 16 6 C 0.01 0.40 6.93 72.48 0.50 0.90 16 7 C 0.06 1.93 3.04 45.93 0.14 2.07 16 8 H 0.09 2.57 7.11 -2.39 -0.02 2.56 16 9 N -0.65 -23.80 4.12 -468.11 -1.93 -25.73 16 10 C 0.14 5.77 2.17 44.17 0.10 5.87 16 11 H 0.07 2.76 7.34 -2.39 -0.02 2.75 16 12 C 0.05 2.83 4.63 29.85 0.14 2.97 16 13 C -0.49 -27.62 8.84 25.60 0.23 -27.40 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 15 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 16 N -0.94 -58.25 13.29 21.45 0.28 -57.97 16 17 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 20 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 21 C -0.11 -3.84 3.53 -19.87 -0.07 -3.91 16 22 C -0.13 -4.09 9.67 22.27 0.22 -3.87 16 23 C -0.12 -3.00 10.05 22.27 0.22 -2.77 16 24 C -0.13 -3.12 10.05 22.27 0.22 -2.89 16 25 C -0.12 -3.29 10.05 22.27 0.22 -3.06 16 26 C -0.13 -4.32 7.49 22.27 0.17 -4.16 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.07 1.27 8.09 -2.39 -0.02 1.25 16 30 H 0.04 1.34 7.48 -2.39 -0.02 1.32 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.74 7.86 -2.38 -0.02 1.72 16 33 H 0.10 2.05 7.87 -2.39 -0.02 2.04 16 34 H 0.07 1.42 7.83 -2.39 -0.02 1.41 16 35 H 0.09 2.64 4.76 -2.38 -0.01 2.63 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.34 12.36 5.57 -89.69 -0.50 11.86 16 38 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 39 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 40 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.12 3.58 8.04 -2.91 -0.02 3.55 16 42 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 43 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 44 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 45 H 0.11 3.72 6.51 -2.91 -0.02 3.70 16 Total: -1.00 -65.88 352.92 3.22 -62.66 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.46 Total: 28.50 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 4.12 Total: -41.84 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -1.64 Total: -83.69 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -1.74 Total: -13.00 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -65.88 3.22 -62.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894357831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.913 kcal (2) G-P(sol) polarization free energy of solvation -65.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds