Wall clock time and date at job start Tue Mar 31 2020 06:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47055 * 2 1 4 4 C 1.50705 * 109.46639 * 119.99614 * 2 1 3 5 5 C 1.38074 * 119.82718 * 300.02061 * 4 2 1 6 6 C 1.38220 * 119.82763 * 179.97438 * 5 4 2 7 7 C 1.38055 * 119.87187 * 0.07070 * 6 5 4 8 8 C 1.38686 * 120.37416 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.72907 * 359.80984 * 8 7 6 10 10 C 1.50715 * 121.65320 * 180.27357 * 9 8 7 11 11 C 1.52888 * 109.96220 * 343.11210 * 10 9 8 12 12 N 1.47157 * 108.51613 * 50.38747 * 11 10 9 13 13 C 1.46898 * 110.99634 * 52.13658 * 12 11 10 14 14 C 1.53001 * 109.46893 * 170.00550 * 13 12 11 15 15 H 1.08999 * 109.47164 * 60.00204 * 14 13 12 16 16 O 1.42903 * 109.47171 * 299.99938 * 14 13 12 17 17 C 1.50707 * 109.47316 * 180.02562 * 14 13 12 18 18 H 1.07995 * 119.99310 * 359.97438 * 17 14 13 19 19 C 1.37872 * 119.99931 * 179.97438 * 17 14 13 20 20 N 1.31517 * 119.99867 * 179.97438 * 19 17 14 21 21 Si 1.86795 * 120.00226 * 359.97438 * 19 17 14 22 22 H 1.48500 * 109.47385 * 90.00022 * 21 19 17 23 23 H 1.48504 * 109.47165 * 209.99884 * 21 19 17 24 24 H 1.48500 * 109.47346 * 330.00169 * 21 19 17 25 25 C 1.46637 * 110.24414 * 288.72565 * 12 11 10 26 26 H 1.08998 * 109.47469 * 300.00347 * 1 2 3 27 27 H 1.08997 * 109.47045 * 60.00681 * 1 2 3 28 28 H 1.09005 * 109.47114 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47469 * 239.99653 * 2 1 3 30 30 H 1.09000 * 109.46646 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46638 * 299.99568 * 3 2 1 32 32 H 1.08998 * 109.47265 * 59.99529 * 3 2 1 33 33 H 1.07994 * 120.08735 * 359.97438 * 5 4 2 34 34 H 1.08006 * 120.06516 * 180.02562 * 6 5 4 35 35 H 1.07999 * 119.81411 * 180.02562 * 7 6 5 36 36 H 1.09006 * 109.39065 * 222.95400 * 10 9 8 37 37 H 1.09003 * 109.30330 * 103.21368 * 10 9 8 38 38 H 1.09007 * 109.63275 * 290.67717 * 11 10 9 39 39 H 1.09007 * 109.63126 * 170.09785 * 11 10 9 40 40 H 1.08999 * 109.47049 * 50.00684 * 13 12 11 41 41 H 1.08997 * 109.47646 * 290.00733 * 13 12 11 42 42 H 0.96700 * 114.00311 * 300.00378 * 16 14 13 43 43 H 0.97000 * 120.00088 * 179.97438 * 20 19 17 44 44 H 1.09006 * 109.29924 * 172.86829 * 25 12 11 45 45 H 1.08995 * 109.30070 * 292.24531 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 6 1.6960 -0.2357 2.4828 6 6 2.1562 -0.8875 3.6115 7 6 2.9508 -2.0090 3.4819 8 6 3.2911 -2.4859 2.2248 9 6 2.8289 -1.8373 1.0993 10 6 3.1669 -2.3215 -0.2874 11 6 4.3562 -3.2804 -0.2300 12 7 4.0852 -4.3003 0.7955 13 6 2.7763 -4.9307 0.5779 14 6 2.6352 -6.1441 1.4992 15 1 2.7157 -5.8230 2.5377 16 8 3.6710 -7.0850 1.2098 17 6 1.2926 -6.7912 1.2756 18 1 0.6084 -6.3781 0.5493 19 6 0.9380 -7.9106 1.9982 20 7 -0.2338 -8.4750 1.8034 21 14 2.1219 -8.6255 3.2538 22 1 1.8776 -7.9985 4.5776 23 1 1.9108 -10.0920 3.3542 24 1 3.5184 -8.3544 2.8279 25 6 4.1670 -3.7079 2.1344 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.0752 0.6425 2.5802 34 1 1.8953 -0.5198 4.5929 35 1 3.3096 -2.5178 4.3644 36 1 3.4198 -1.4683 -0.9170 37 1 2.3048 -2.8389 -0.7085 38 1 5.2592 -2.7287 0.0318 39 1 4.4860 -3.7614 -1.1996 40 1 2.6958 -5.2517 -0.4606 41 1 1.9861 -4.2131 0.7986 42 1 3.6606 -7.4142 0.3006 43 1 -0.4831 -9.2628 2.3115 44 1 3.8412 -4.4404 2.8730 45 1 5.1995 -3.4268 2.3415 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930254901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:54 Heat of formation + Delta-G solvation = -50.737438 kcal Electronic energy + Delta-G solvation = -24058.519304 eV Core-core repulsion = 20846.307776 eV Total energy + Delta-G solvation = -3212.211528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.66329 -39.08784 -37.29215 -36.30155 -34.40523 -33.06780 -31.90712 -30.64837 -29.46361 -28.00111 -27.35230 -25.21140 -24.22419 -23.82496 -22.45797 -20.66790 -20.03503 -19.15677 -17.65468 -16.99931 -16.81252 -16.71527 -16.29342 -15.87670 -15.49922 -15.36727 -15.01927 -14.84318 -14.65494 -14.44282 -14.30714 -14.00041 -13.56070 -13.43220 -13.13651 -13.01689 -12.94741 -12.90049 -12.72891 -12.46251 -12.43473 -12.31893 -11.99157 -11.82706 -11.73143 -11.57495 -11.24983 -10.99959 -10.80679 -10.11069 -9.45550 -9.44462 -9.15016 -8.35801 -6.49943 0.44310 0.46074 1.38561 1.44044 1.75310 2.43928 2.79014 3.01888 3.06999 3.65947 3.80845 3.87244 3.96558 4.07998 4.10469 4.21614 4.26616 4.27517 4.30541 4.47607 4.53044 4.54784 4.57422 4.62494 4.73547 4.78942 4.85998 4.89479 4.92899 4.97086 5.03502 5.05792 5.10058 5.21073 5.26158 5.33482 5.37638 5.44011 5.49035 5.60000 5.64073 5.76654 6.08046 6.14252 6.15509 6.22089 6.62136 7.23201 7.39096 8.78656 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019282 B = 0.004811 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.786725 B = 5819.180281 C = 5936.098307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.062 4.062 3 C -0.136 4.136 4 C -0.082 4.082 5 C -0.125 4.125 6 C -0.126 4.126 7 C -0.136 4.136 8 C -0.121 4.121 9 C -0.091 4.091 10 C -0.112 4.112 11 C 0.053 3.947 12 N -0.522 5.522 13 C 0.057 3.943 14 C 0.212 3.788 15 H 0.043 0.957 16 O -0.572 6.572 17 C -0.565 4.565 18 H 0.033 0.967 19 C 0.030 3.970 20 N -0.940 5.940 21 Si 0.936 3.064 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.203 1.203 25 C 0.089 3.911 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.127 0.873 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.023 0.977 42 H 0.366 0.634 43 H 0.267 0.733 44 H 0.070 0.930 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.163 20.228 -2.234 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 C -0.193 4.193 4 C -0.082 4.082 5 C -0.143 4.143 6 C -0.144 4.144 7 C -0.155 4.155 8 C -0.122 4.122 9 C -0.091 4.091 10 C -0.150 4.150 11 C -0.075 4.075 12 N -0.243 5.243 13 C -0.072 4.072 14 C 0.153 3.847 15 H 0.061 0.939 16 O -0.378 6.378 17 C -0.603 4.603 18 H 0.051 0.949 19 C -0.169 4.169 20 N -0.580 5.580 21 Si 0.760 3.240 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.125 1.125 25 C -0.039 4.039 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.145 0.855 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.041 0.959 42 H 0.213 0.787 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.601 19.827 -1.637 21.674 hybrid contribution -1.245 -0.280 0.260 1.302 sum 7.356 19.548 -1.377 20.931 Atomic orbital electron populations 1.21832 0.94182 1.01129 1.02758 1.20249 0.96046 0.96795 0.94917 1.21794 1.00909 0.93931 1.02662 1.20043 0.97110 0.95101 0.95900 1.21130 1.00625 1.00765 0.91778 1.21322 0.97757 0.95671 0.99621 1.21279 0.99666 0.97632 0.96875 1.20541 0.99888 0.98098 0.93717 1.19606 0.98764 0.95692 0.95033 1.21118 0.99794 1.00550 0.93562 1.22338 0.97296 0.91613 0.96263 1.62616 1.30093 1.29227 1.02375 1.22438 0.88858 0.95874 0.99984 1.19458 0.84565 0.86140 0.94504 0.93917 1.86582 1.54774 1.62463 1.34011 1.21829 1.02259 1.12910 1.23289 0.94880 1.25822 0.96220 0.96562 0.98332 1.70086 1.22872 1.22185 1.42828 0.86030 0.83955 0.76239 0.77771 1.21363 1.22240 1.12469 1.21143 0.99033 0.91662 0.92041 0.92073 0.90777 0.94612 0.90073 0.92872 0.91013 0.92181 0.84449 0.84183 0.85529 0.88273 0.91853 0.89469 0.89294 0.91460 0.95872 0.78724 0.92476 0.91212 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.00 71.98 0.65 -2.14 16 2 C -0.06 -1.23 2.85 -11.54 -0.03 -1.27 16 3 C -0.14 -2.09 9.00 71.98 0.65 -1.44 16 4 C -0.08 -2.05 4.79 -19.81 -0.09 -2.15 16 5 C -0.13 -2.98 8.70 22.23 0.19 -2.79 16 6 C -0.13 -3.12 10.05 22.22 0.22 -2.90 16 7 C -0.14 -3.85 9.65 22.33 0.22 -3.63 16 8 C -0.12 -3.70 5.19 -19.87 -0.10 -3.80 16 9 C -0.09 -2.59 5.05 -19.85 -0.10 -2.69 16 10 C -0.11 -2.85 4.09 29.82 0.12 -2.73 16 11 C 0.05 1.36 6.02 86.22 0.52 1.88 16 12 N -0.52 -17.23 4.88 -901.18 -4.40 -21.63 16 13 C 0.06 2.25 3.53 86.30 0.30 2.55 16 14 C 0.21 9.96 2.22 29.85 0.07 10.02 16 15 H 0.04 2.11 5.82 -2.39 -0.01 2.10 16 16 O -0.57 -25.64 10.00 -148.98 -1.49 -27.13 16 17 C -0.56 -32.36 9.34 25.60 0.24 -32.12 16 18 H 0.03 2.09 7.99 -2.91 -0.02 2.06 16 19 C 0.03 1.78 5.47 84.65 0.46 2.24 16 20 N -0.94 -59.32 13.96 21.45 0.30 -59.02 16 21 Si 0.94 46.03 26.99 68.60 1.85 47.88 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 23 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 24 H -0.20 -9.53 5.30 99.48 0.53 -9.01 16 25 C 0.09 2.84 5.43 85.58 0.46 3.30 16 26 H 0.06 1.11 7.37 -2.39 -0.02 1.09 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.08 1.61 5.61 -2.39 -0.01 1.60 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.87 7.38 -2.39 -0.02 0.86 16 33 H 0.14 2.60 7.08 -2.91 -0.02 2.57 16 34 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 35 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 36 H 0.10 2.01 6.74 -2.38 -0.02 2.00 16 37 H 0.06 1.82 7.06 -2.39 -0.02 1.81 16 38 H 0.09 1.99 8.05 -2.38 -0.02 1.97 16 39 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.07 2.64 8.08 -2.39 -0.02 2.62 16 41 H 0.02 0.99 5.91 -2.39 -0.01 0.98 16 42 H 0.37 14.68 9.04 -74.06 -0.67 14.01 16 43 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 44 H 0.07 2.50 6.09 -2.38 -0.01 2.48 16 45 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -68.14 341.20 0.17 -67.97 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.13 Total: 29.58 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 3.78 Total: -37.66 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -4.10 Total: -80.65 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -1.49 Total: -27.13 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.85 Total: 47.88 kcal Total: -68.14 0.17 -67.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930254901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.237 kcal (2) G-P(sol) polarization free energy of solvation -68.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds