Wall clock time and date at job start Tue Mar 31 2020 06:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 119.99991 * 2 1 4 4 C 1.50696 * 109.47100 * 269.99891 * 3 2 1 5 5 H 1.07992 * 120.00439 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99904 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99979 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 120.00041 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46810 * 90.00001 * 8 6 4 10 10 H 1.48500 * 109.47286 * 210.00129 * 8 6 4 11 11 H 1.48500 * 109.47368 * 330.00465 * 8 6 4 12 12 C 1.34774 * 120.00189 * 180.02562 * 2 1 3 13 13 O 1.21553 * 119.99843 * 185.06334 * 12 2 1 14 14 C 1.47848 * 119.99738 * 5.05691 * 12 2 1 15 15 C 1.39586 * 120.14429 * 54.36354 * 14 12 2 16 16 C 1.37936 * 119.85598 * 180.02562 * 15 14 12 17 17 C 1.38390 * 120.14044 * 359.75561 * 16 15 14 18 18 C 1.38335 * 120.29121 * 0.50407 * 17 16 15 19 19 C 1.37973 * 120.14699 * 359.48758 * 18 17 16 20 20 C 1.50704 * 120.07538 * 180.23140 * 19 18 17 21 21 C 1.52999 * 109.47019 * 270.72039 * 20 19 18 22 22 C 1.52999 * 109.47247 * 64.51203 * 21 20 19 23 23 C 1.53002 * 109.46852 * 184.50806 * 21 20 19 24 24 C 1.52994 * 109.47648 * 304.51073 * 21 20 19 25 25 H 1.09002 * 109.47495 * 266.87765 * 1 2 3 26 26 H 1.09002 * 109.47099 * 26.87605 * 1 2 3 27 27 H 1.09002 * 109.47162 * 146.87053 * 1 2 3 28 28 H 1.09007 * 109.47306 * 30.00060 * 3 2 1 29 29 H 1.09006 * 109.46976 * 149.99930 * 3 2 1 30 30 H 0.97003 * 120.00489 * 180.02562 * 7 6 4 31 31 H 1.07998 * 120.07402 * 0.02562 * 15 14 12 32 32 H 1.08001 * 119.93171 * 179.97438 * 16 15 14 33 33 H 1.07996 * 119.85017 * 180.27212 * 17 16 15 34 34 H 1.08003 * 119.92299 * 179.77242 * 18 17 16 35 35 H 1.08997 * 109.46918 * 30.72004 * 20 19 18 36 36 H 1.08999 * 109.46578 * 150.72136 * 20 19 18 37 37 H 1.09006 * 109.47394 * 59.99449 * 22 21 20 38 38 H 1.08999 * 109.47315 * 179.97438 * 22 21 20 39 39 H 1.09000 * 109.47148 * 299.99938 * 22 21 20 40 40 H 1.08999 * 109.46828 * 60.00395 * 23 21 20 41 41 H 1.08999 * 109.47145 * 180.02562 * 23 21 20 42 42 H 1.08996 * 109.47486 * 300.00330 * 23 21 20 43 43 H 1.09004 * 109.47198 * 63.53706 * 24 21 20 44 44 H 1.09000 * 109.47703 * 183.54003 * 24 21 20 45 45 H 1.09005 * 109.47049 * 303.54174 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.3457 3.2574 -2.9126 8 14 3.7338 3.9288 -0.2529 9 1 5.1069 3.5068 0.1238 10 1 3.7498 5.3554 -0.6647 11 1 2.8273 3.7597 0.9111 12 6 2.1388 -1.1672 -0.0005 13 8 3.3508 -1.1692 0.0924 14 6 1.4039 -2.4450 -0.1140 15 6 0.5225 -2.6548 -1.1758 16 6 -0.1605 -3.8491 -1.2755 17 6 0.0304 -4.8400 -0.3285 18 6 0.8985 -4.6364 0.7292 19 6 1.5880 -3.4464 0.8405 20 6 2.5372 -3.2284 1.9906 21 6 1.7770 -2.6202 3.1709 22 6 0.7352 -3.6202 3.6763 23 6 2.7600 -2.2948 4.2973 24 6 1.0758 -1.3375 2.7196 25 1 -0.3634 -0.0560 1.0261 26 1 -0.3633 0.9167 -0.4646 27 1 -0.3633 -0.8606 -0.5617 28 1 1.6084 2.0285 0.5139 29 1 3.1499 1.1384 0.5139 30 1 3.8232 4.0829 -3.0899 31 1 0.3755 -1.8838 -1.9176 32 1 -0.8431 -4.0125 -2.0963 33 1 -0.5034 -5.7749 -0.4136 34 1 1.0403 -5.4124 1.4668 35 1 2.9702 -4.1827 2.2902 36 1 3.3321 -2.5495 1.6817 37 1 1.2348 -4.5342 3.9979 38 1 0.1940 -3.1872 4.5175 39 1 0.0349 -3.8521 2.8739 40 1 3.5022 -1.5824 3.9373 41 1 2.2185 -1.8620 5.1384 42 1 3.2596 -3.2086 4.6189 43 1 0.3307 -1.5783 1.9612 44 1 0.5863 -0.8709 3.5745 45 1 1.8106 -0.6495 2.3015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930594919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:36 Heat of formation + Delta-G solvation = -16.793563 kcal Electronic energy + Delta-G solvation = -24463.183155 eV Core-core repulsion = 21252.443544 eV Total energy + Delta-G solvation = -3210.739611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.48350 -38.06510 -37.01524 -34.98926 -32.62880 -31.54909 -31.14450 -28.41766 -27.26159 -27.10873 -26.60821 -25.89698 -23.57559 -22.17951 -21.30994 -19.20815 -18.36332 -16.98891 -16.76236 -16.00806 -15.58440 -15.45917 -14.83379 -14.51351 -14.30698 -14.09825 -13.88256 -13.59785 -13.04275 -12.85506 -12.68356 -12.38158 -12.26936 -12.19929 -12.05495 -12.00780 -11.60703 -11.57142 -11.45230 -11.33426 -11.06163 -10.92041 -10.66867 -10.53444 -10.48054 -10.37690 -10.13682 -9.54619 -9.08254 -8.71676 -8.59763 -8.53547 -7.67228 -6.09723 -4.08741 1.21708 1.44340 3.28729 3.30757 3.34718 3.36628 3.79163 3.94285 4.38846 4.73768 4.83904 4.89057 4.96189 5.03695 5.07349 5.18241 5.24591 5.39240 5.53924 5.59273 5.63942 5.68613 5.69597 5.81147 5.83946 5.88419 5.92936 5.99764 6.00844 6.05785 6.12674 6.20232 6.20851 6.36840 6.41180 6.49322 6.50969 6.53208 6.67934 6.75108 6.94181 7.02388 7.32965 7.59625 8.22004 8.45389 8.89677 8.95829 9.50468 11.03595 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017861 B = 0.005682 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.253317 B = 4927.003262 C = 5890.106810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.588 5.588 3 C 0.216 3.784 4 C -0.530 4.530 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.265 1.265 12 C 0.559 3.441 13 O -0.535 6.535 14 C -0.110 4.110 15 C -0.089 4.089 16 C -0.131 4.131 17 C -0.109 4.109 18 C -0.125 4.125 19 C -0.032 4.032 20 C -0.092 4.092 21 C -0.061 4.061 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.153 4.153 25 H 0.048 0.952 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.031 0.969 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.195 -14.794 11.306 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.319 5.319 3 C 0.095 3.905 4 C -0.569 4.569 5 H 0.092 0.908 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.702 3.298 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.347 3.653 13 O -0.413 6.413 14 C -0.114 4.114 15 C -0.107 4.107 16 C -0.149 4.149 17 C -0.127 4.127 18 C -0.143 4.143 19 C -0.032 4.032 20 C -0.129 4.129 21 C -0.061 4.061 22 C -0.200 4.200 23 C -0.197 4.197 24 C -0.210 4.210 25 H 0.067 0.933 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.473 -14.592 11.251 20.280 hybrid contribution 0.223 0.658 0.378 0.791 sum -8.250 -13.934 11.628 19.935 Atomic orbital electron populations 1.21977 0.81047 1.03460 1.00906 1.47751 1.06247 1.06726 1.71187 1.19687 0.92535 0.79881 0.98383 1.21328 1.37058 1.07240 0.91234 0.90762 1.24847 0.95204 0.97316 0.95554 1.69893 1.41396 1.23585 1.18655 0.86863 0.80172 0.79778 0.82970 1.19868 1.21061 1.19023 1.18074 0.87073 0.83299 0.76892 1.90720 1.13559 1.86922 1.50104 1.20052 0.98834 0.95587 0.96879 1.21316 0.94510 0.97670 0.97213 1.21034 1.00698 0.93609 0.99586 1.21193 0.98202 0.98811 0.94536 1.20939 0.97813 0.96904 0.98653 1.19793 0.96064 0.92468 0.94919 1.20979 0.97553 1.02326 0.92044 1.20457 0.95425 0.95731 0.94478 1.21961 0.98691 0.98457 1.00846 1.21854 0.98956 1.01357 0.97549 1.22217 1.00966 0.96841 1.01025 0.93339 0.90536 0.91373 0.95138 0.94409 0.92544 0.85128 0.85842 0.86170 0.85956 0.91146 0.88283 0.92990 0.93004 0.92226 0.92314 0.92786 0.92879 0.92072 0.93080 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 9.30 59.84 0.56 1.68 16 2 N -0.59 -12.10 1.99 -184.07 -0.37 -12.46 16 3 C 0.22 5.25 4.25 -5.19 -0.02 5.22 16 4 C -0.53 -15.17 9.94 -34.44 -0.34 -15.51 16 5 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 8 Si 0.88 21.56 27.47 -169.99 -4.67 16.90 16 9 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 12 C 0.56 11.63 4.15 -12.33 -0.05 11.57 16 13 O -0.53 -13.19 14.65 5.32 0.08 -13.11 16 14 C -0.11 -1.85 3.88 -104.97 -0.41 -2.26 16 15 C -0.09 -1.31 7.57 -39.19 -0.30 -1.61 16 16 C -0.13 -1.55 10.03 -39.64 -0.40 -1.95 16 17 C -0.11 -1.19 10.04 -39.49 -0.40 -1.58 16 18 C -0.13 -1.47 7.90 -39.64 -0.31 -1.79 16 19 C -0.03 -0.46 4.01 -104.22 -0.42 -0.88 16 20 C -0.09 -1.30 4.20 -27.88 -0.12 -1.42 16 21 C -0.06 -0.76 0.80 -154.51 -0.12 -0.88 16 22 C -0.14 -1.46 7.99 37.16 0.30 -1.16 16 23 C -0.14 -1.63 8.47 37.16 0.31 -1.31 16 24 C -0.15 -2.16 5.94 37.15 0.22 -1.94 16 25 H 0.05 0.68 6.32 -51.93 -0.33 0.35 16 26 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 27 H 0.07 0.97 4.40 -51.93 -0.23 0.75 16 28 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 29 H 0.04 0.98 6.78 -51.93 -0.35 0.63 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.13 1.97 7.33 -52.49 -0.38 1.58 16 32 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.12 1.17 8.00 -52.48 -0.42 0.75 16 35 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 36 H 0.10 1.74 5.68 -51.93 -0.29 1.44 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.62 6.22 -51.93 -0.32 0.30 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.86 4.48 -51.93 -0.23 0.63 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.13 6.06 -51.93 -0.31 0.82 16 LS Contribution 342.63 15.07 5.16 5.16 Total: -1.00 -32.86 342.63 -7.67 -40.54 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.06 Total: 1.63 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.59 Total: -11.78 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.41 Total: -39.33 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.86 -7.67 -40.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930594919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.742 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds