Wall clock time and date at job start Tue Mar 31 2020 06:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 119.99991 * 2 1 4 4 C 1.50696 * 109.47100 * 269.99891 * 3 2 1 5 5 H 1.07992 * 120.00439 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99904 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99979 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 120.00041 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46810 * 90.00001 * 8 6 4 10 10 H 1.48500 * 109.47286 * 210.00129 * 8 6 4 11 11 H 1.48500 * 109.47368 * 330.00465 * 8 6 4 12 12 C 1.34774 * 120.00189 * 180.02562 * 2 1 3 13 13 O 1.21553 * 119.99843 * 185.06334 * 12 2 1 14 14 C 1.47848 * 119.99738 * 5.05691 * 12 2 1 15 15 C 1.39586 * 120.14429 * 54.36354 * 14 12 2 16 16 C 1.37936 * 119.85598 * 180.02562 * 15 14 12 17 17 C 1.38390 * 120.14044 * 359.75561 * 16 15 14 18 18 C 1.38335 * 120.29121 * 0.50407 * 17 16 15 19 19 C 1.37973 * 120.14699 * 359.48758 * 18 17 16 20 20 C 1.50704 * 120.07538 * 180.23140 * 19 18 17 21 21 C 1.52999 * 109.47019 * 270.72039 * 20 19 18 22 22 C 1.52999 * 109.47247 * 64.51203 * 21 20 19 23 23 C 1.53002 * 109.46852 * 184.50806 * 21 20 19 24 24 C 1.52994 * 109.47648 * 304.51073 * 21 20 19 25 25 H 1.09002 * 109.47495 * 266.87765 * 1 2 3 26 26 H 1.09002 * 109.47099 * 26.87605 * 1 2 3 27 27 H 1.09002 * 109.47162 * 146.87053 * 1 2 3 28 28 H 1.09007 * 109.47306 * 30.00060 * 3 2 1 29 29 H 1.09006 * 109.46976 * 149.99930 * 3 2 1 30 30 H 0.97003 * 120.00489 * 180.02562 * 7 6 4 31 31 H 1.07998 * 120.07402 * 0.02562 * 15 14 12 32 32 H 1.08001 * 119.93171 * 179.97438 * 16 15 14 33 33 H 1.07996 * 119.85017 * 180.27212 * 17 16 15 34 34 H 1.08003 * 119.92299 * 179.77242 * 18 17 16 35 35 H 1.08997 * 109.46918 * 30.72004 * 20 19 18 36 36 H 1.08999 * 109.46578 * 150.72136 * 20 19 18 37 37 H 1.09006 * 109.47394 * 59.99449 * 22 21 20 38 38 H 1.08999 * 109.47315 * 179.97438 * 22 21 20 39 39 H 1.09000 * 109.47148 * 299.99938 * 22 21 20 40 40 H 1.08999 * 109.46828 * 60.00395 * 23 21 20 41 41 H 1.08999 * 109.47145 * 180.02562 * 23 21 20 42 42 H 1.08996 * 109.47486 * 300.00330 * 23 21 20 43 43 H 1.09004 * 109.47198 * 63.53706 * 24 21 20 44 44 H 1.09000 * 109.47703 * 183.54003 * 24 21 20 45 45 H 1.09005 * 109.47049 * 303.54174 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.3457 3.2574 -2.9126 8 14 3.7338 3.9288 -0.2529 9 1 5.1069 3.5068 0.1238 10 1 3.7498 5.3554 -0.6647 11 1 2.8273 3.7597 0.9111 12 6 2.1388 -1.1672 -0.0005 13 8 3.3508 -1.1692 0.0924 14 6 1.4039 -2.4450 -0.1140 15 6 0.5225 -2.6548 -1.1758 16 6 -0.1605 -3.8491 -1.2755 17 6 0.0304 -4.8400 -0.3285 18 6 0.8985 -4.6364 0.7292 19 6 1.5880 -3.4464 0.8405 20 6 2.5372 -3.2284 1.9906 21 6 1.7770 -2.6202 3.1709 22 6 0.7352 -3.6202 3.6763 23 6 2.7600 -2.2948 4.2973 24 6 1.0758 -1.3375 2.7196 25 1 -0.3634 -0.0560 1.0261 26 1 -0.3633 0.9167 -0.4646 27 1 -0.3633 -0.8606 -0.5617 28 1 1.6084 2.0285 0.5139 29 1 3.1499 1.1384 0.5139 30 1 3.8232 4.0829 -3.0899 31 1 0.3755 -1.8838 -1.9176 32 1 -0.8431 -4.0125 -2.0963 33 1 -0.5034 -5.7749 -0.4136 34 1 1.0403 -5.4124 1.4668 35 1 2.9702 -4.1827 2.2902 36 1 3.3321 -2.5495 1.6817 37 1 1.2348 -4.5342 3.9979 38 1 0.1940 -3.1872 4.5175 39 1 0.0349 -3.8521 2.8739 40 1 3.5022 -1.5824 3.9373 41 1 2.2185 -1.8620 5.1384 42 1 3.2596 -3.2086 4.6189 43 1 0.3307 -1.5783 1.9612 44 1 0.5863 -0.8709 3.5745 45 1 1.8106 -0.6495 2.3015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930594919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:35 Heat of formation + Delta-G solvation = -36.075208 kcal Electronic energy + Delta-G solvation = -24464.019270 eV Core-core repulsion = 21252.443544 eV Total energy + Delta-G solvation = -3211.575726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.75699 -39.46065 -37.99315 -36.71831 -34.76918 -32.57942 -32.41891 -30.24389 -28.20190 -28.08890 -27.79083 -27.27884 -25.19800 -23.54862 -22.52441 -20.55446 -19.50760 -19.16190 -18.17005 -17.41315 -16.93899 -16.71990 -16.33191 -15.75676 -15.51050 -15.38154 -15.00588 -14.81980 -14.75599 -14.24940 -14.01229 -13.86390 -13.68516 -13.41981 -13.27848 -13.13618 -12.97978 -12.88354 -12.56051 -12.52878 -12.46110 -12.39906 -12.08123 -12.03611 -11.77259 -11.64484 -11.48766 -11.37211 -10.86595 -10.66668 -9.81813 -9.57228 -9.35869 -8.37406 -6.42735 0.13043 0.44402 1.29399 1.33495 1.42001 1.84117 2.27442 2.29551 2.81686 2.96777 3.63189 3.76050 3.85193 3.93537 4.05292 4.16121 4.25891 4.35022 4.45711 4.52059 4.60037 4.63545 4.71295 4.74063 4.75277 4.84737 4.85653 4.88600 4.94406 4.96025 5.02503 5.07438 5.09500 5.13540 5.25174 5.38897 5.40969 5.45301 5.47491 5.52072 5.55800 5.59180 5.70116 6.04661 6.20457 6.58051 6.63182 7.17019 7.35066 8.79517 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017861 B = 0.005682 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.253317 B = 4927.003262 C = 5890.106810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.594 5.594 3 C 0.227 3.773 4 C -0.538 4.538 5 H 0.029 0.971 6 C 0.014 3.986 7 N -0.943 5.943 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.272 1.272 11 H -0.239 1.239 12 C 0.557 3.443 13 O -0.589 6.589 14 C -0.138 4.138 15 C -0.104 4.104 16 C -0.124 4.124 17 C -0.092 4.092 18 C -0.118 4.118 19 C -0.039 4.039 20 C -0.091 4.091 21 C -0.060 4.060 22 C -0.134 4.134 23 C -0.138 4.138 24 C -0.150 4.150 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.018 0.982 30 H 0.269 0.731 31 H 0.115 0.885 32 H 0.153 0.847 33 H 0.163 0.837 34 H 0.154 0.846 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.031 0.969 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.496 -17.306 13.653 24.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.324 5.324 3 C 0.104 3.896 4 C -0.577 4.577 5 H 0.047 0.953 6 C -0.184 4.184 7 N -0.583 5.583 8 Si 0.768 3.232 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.163 1.163 12 C 0.347 3.653 13 O -0.471 6.471 14 C -0.142 4.142 15 C -0.123 4.123 16 C -0.142 4.142 17 C -0.110 4.110 18 C -0.136 4.136 19 C -0.040 4.040 20 C -0.128 4.128 21 C -0.060 4.060 22 C -0.192 4.192 23 C -0.195 4.195 24 C -0.207 4.207 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.133 0.867 32 H 0.170 0.830 33 H 0.180 0.820 34 H 0.172 0.828 35 H 0.109 0.891 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -10.831 -17.118 13.601 24.399 hybrid contribution 0.908 1.320 -0.448 1.664 sum -9.922 -15.798 13.153 22.826 Atomic orbital electron populations 1.22180 0.78339 1.04069 1.02789 1.47774 1.07946 1.05622 1.71064 1.19322 0.92628 0.82206 0.95409 1.21541 1.36985 1.06892 0.92247 0.95275 1.25814 0.95189 0.98830 0.98582 1.70039 1.42556 1.24516 1.21198 0.85750 0.79567 0.77947 0.79930 1.20205 1.19680 1.16265 1.18789 0.86676 0.84658 0.75152 1.90670 1.16097 1.87878 1.52475 1.19793 1.00715 0.94246 0.99399 1.21292 0.95338 0.99082 0.96596 1.21357 1.00000 0.92280 1.00566 1.21684 0.96829 0.99676 0.92829 1.21282 0.96753 0.96017 0.99506 1.19911 0.96617 0.92997 0.94460 1.20937 0.96755 1.02267 0.92879 1.20472 0.96005 0.95538 0.93967 1.21888 0.97881 0.98279 1.01102 1.21842 0.98479 1.01562 0.97645 1.22163 1.00057 0.97178 1.01274 0.90814 0.91034 0.89552 0.93291 0.96400 0.92177 0.86718 0.82973 0.81986 0.82797 0.89119 0.92733 0.91215 0.92028 0.92058 0.95025 0.91452 0.91221 0.92139 0.91753 0.95367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.22 9.30 127.77 1.19 3.41 16 2 N -0.59 -25.66 1.99 -854.56 -1.70 -27.36 16 3 C 0.23 11.50 4.25 85.63 0.36 11.86 16 4 C -0.54 -32.51 9.94 25.60 0.25 -32.26 16 5 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 6 C 0.01 0.85 5.47 84.66 0.46 1.31 16 7 N -0.94 -60.48 13.96 21.45 0.30 -60.18 16 8 Si 0.95 45.45 27.47 68.60 1.88 47.33 16 9 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 12 C 0.56 24.57 4.15 86.79 0.36 24.93 16 13 O -0.59 -31.45 14.65 -3.88 -0.06 -31.51 16 14 C -0.14 -4.71 3.88 -20.09 -0.08 -4.79 16 15 C -0.10 -3.04 7.57 22.52 0.17 -2.87 16 16 C -0.12 -2.54 10.03 22.23 0.22 -2.31 16 17 C -0.09 -1.54 10.04 22.33 0.22 -1.32 16 18 C -0.12 -2.29 7.90 22.23 0.18 -2.12 16 19 C -0.04 -1.08 4.01 -19.61 -0.08 -1.16 16 20 C -0.09 -2.55 4.20 29.85 0.13 -2.42 16 21 C -0.06 -1.41 0.80 -52.18 -0.04 -1.45 16 22 C -0.13 -2.25 7.99 71.98 0.58 -1.67 16 23 C -0.14 -3.08 8.47 71.98 0.61 -2.47 16 24 C -0.15 -4.15 5.94 71.98 0.43 -3.72 16 25 H 0.07 2.01 6.32 -2.39 -0.02 2.00 16 26 H 0.07 2.37 8.05 -2.39 -0.02 2.35 16 27 H 0.09 2.49 4.40 -2.39 -0.01 2.48 16 28 H 0.05 2.29 7.13 -2.38 -0.02 2.27 16 29 H 0.02 0.98 6.78 -2.38 -0.02 0.96 16 30 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 31 H 0.11 3.60 7.33 -2.91 -0.02 3.58 16 32 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.15 2.05 8.00 -2.91 -0.02 2.03 16 35 H 0.09 2.07 8.09 -2.39 -0.02 2.05 16 36 H 0.05 2.04 5.68 -2.39 -0.01 2.03 16 37 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.06 1.02 6.22 -2.39 -0.01 1.00 16 40 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.06 1.65 4.48 -2.38 -0.01 1.64 16 44 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.03 0.99 6.06 -2.38 -0.01 0.97 16 Total: -1.00 -78.32 342.63 6.30 -72.02 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.91 Total: 16.76 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 4.96 Total: -17.06 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -1.40 Total: -87.54 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.06 Total: -31.51 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.33 kcal Total: -78.32 6.30 -72.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930594919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.948 kcal (2) G-P(sol) polarization free energy of solvation -78.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds