Wall clock time and date at job start Tue Mar 31 2020 05:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 110.06497 * 2 1 4 4 C 1.53998 * 109.91852 * 121.20531 * 2 1 3 5 5 H 1.08998 * 110.30816 * 239.59620 * 4 2 1 6 6 C 1.50700 * 110.30626 * 1.66290 * 4 2 1 7 7 C 1.38234 * 120.00116 * 250.65932 * 6 4 2 8 8 C 1.38229 * 120.00242 * 179.72999 * 7 6 4 9 9 C 1.38237 * 119.99847 * 0.25428 * 8 7 6 10 10 C 1.38235 * 120.00204 * 0.02562 * 9 8 7 11 11 C 1.38238 * 119.99877 * 70.89836 * 6 4 2 12 12 C 1.54599 * 105.13636 * 120.58024 * 4 2 1 13 13 C 1.54930 * 102.92476 * 21.95687 * 12 4 2 14 14 N 1.47899 * 109.91776 * 238.79843 * 2 1 3 15 15 C 1.46899 * 111.00335 * 94.80124 * 14 2 1 16 16 C 1.52994 * 109.47500 * 189.99813 * 15 14 2 17 17 H 1.09003 * 109.46704 * 60.00006 * 16 15 14 18 18 O 1.42896 * 109.47298 * 300.00429 * 16 15 14 19 19 C 1.50695 * 109.47456 * 179.97438 * 16 15 14 20 20 H 1.08003 * 119.99980 * 0.02562 * 19 16 15 21 21 C 1.37884 * 120.00356 * 180.02562 * 19 16 15 22 22 N 1.31515 * 120.00054 * 179.97438 * 21 19 16 23 23 Si 1.86794 * 119.99607 * 0.02562 * 21 19 16 24 24 H 1.48505 * 109.47241 * 90.00383 * 23 21 19 25 25 H 1.48503 * 109.47253 * 209.99899 * 23 21 19 26 26 H 1.48498 * 109.47509 * 330.00338 * 23 21 19 27 27 H 1.08997 * 109.47327 * 291.18455 * 1 2 3 28 28 H 1.09003 * 109.47068 * 51.18366 * 1 2 3 29 29 H 1.09001 * 109.47207 * 171.18467 * 1 2 3 30 30 H 1.09003 * 109.47554 * 181.20447 * 3 2 1 31 31 H 1.08996 * 109.47461 * 301.20985 * 3 2 1 32 32 H 1.09001 * 109.47074 * 61.20883 * 3 2 1 33 33 H 1.08006 * 119.99859 * 0.02562 * 7 6 4 34 34 H 1.07994 * 120.00435 * 180.27851 * 8 7 6 35 35 H 1.08001 * 120.00242 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.00331 * 179.97438 * 10 9 8 37 37 H 1.08000 * 120.00198 * 0.02562 * 11 6 4 38 38 H 1.08996 * 110.72060 * 140.31854 * 12 4 2 39 39 H 1.09001 * 110.72176 * 263.59414 * 12 4 2 40 40 H 1.08999 * 110.66916 * 204.14928 * 13 12 4 41 41 H 1.09006 * 110.66465 * 81.02190 * 13 12 4 42 42 H 1.09004 * 109.46972 * 310.00062 * 15 14 2 43 43 H 1.09003 * 109.47137 * 70.00085 * 15 14 2 44 44 H 0.96705 * 113.99642 * 299.99582 * 18 16 15 45 45 H 0.96993 * 119.99590 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0549 1.4371 0.0000 4 6 2.0546 -0.7501 1.2384 5 1 2.6699 -0.0890 1.8486 6 6 0.9046 -1.2893 2.0493 7 6 0.6022 -0.7301 3.2768 8 6 -0.4561 -1.2210 4.0182 9 6 -1.2090 -2.2747 3.5344 10 6 -0.9031 -2.8377 2.3096 11 6 0.1550 -2.3464 1.5679 12 6 2.9060 -1.9117 0.6761 13 6 3.2681 -1.4184 -0.7472 14 7 2.0338 -0.7204 -1.1894 15 6 2.3211 0.2124 -2.2873 16 6 2.5980 -0.5773 -3.5681 17 1 1.7240 -1.1777 -3.8208 18 8 3.7227 -1.4351 -3.3652 19 6 2.8920 0.3796 -4.6946 20 1 2.8829 1.4445 -4.5148 21 6 3.1729 -0.1044 -5.9548 22 7 3.4290 0.7307 -6.9379 23 14 3.1880 -1.9462 -6.2658 24 1 1.8297 -2.3915 -6.6684 25 1 4.1526 -2.2570 -7.3513 26 1 3.5937 -2.6545 -5.0253 27 1 -0.3634 0.3714 0.9582 28 1 -0.3633 0.6442 -0.8007 29 1 -0.3634 -1.0155 -0.1575 30 1 3.1447 1.4260 -0.0216 31 1 1.6794 1.9612 -0.8789 32 1 1.7146 1.9482 0.9006 33 1 1.1900 0.0935 3.6545 34 1 -0.6951 -0.7812 4.9751 35 1 -2.0362 -2.6580 4.1134 36 1 -1.4910 -3.6611 1.9318 37 1 0.3939 -2.7861 0.6109 38 1 3.8052 -2.0557 1.2749 39 1 2.3215 -2.8305 0.6289 40 1 3.4889 -2.2615 -1.4020 41 1 4.1098 -0.7266 -0.7121 42 1 1.4631 0.8666 -2.4421 43 1 3.1951 0.8128 -2.0347 44 1 4.5377 -0.9675 -3.1365 45 1 3.6269 0.3902 -7.8243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930755158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:51 Heat of formation + Delta-G solvation = -15.015460 kcal Electronic energy + Delta-G solvation = -24107.909349 eV Core-core repulsion = 20897.246843 eV Total energy + Delta-G solvation = -3210.662507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56662 -38.49328 -36.06215 -32.98782 -32.30992 -32.02591 -30.98110 -29.93568 -27.86313 -27.06288 -25.21672 -24.21593 -22.72770 -21.94044 -20.99855 -19.94076 -18.54523 -17.11171 -16.80196 -15.61812 -15.48889 -15.17159 -14.84233 -14.47362 -14.42749 -14.02321 -13.88057 -13.54119 -13.38993 -12.88446 -12.84722 -12.58682 -12.41393 -12.02535 -11.87661 -11.72725 -11.50547 -11.32634 -11.18368 -10.96084 -10.92384 -10.70360 -10.48845 -10.45081 -10.39162 -10.18428 -9.88941 -8.98651 -8.90057 -8.62598 -8.58331 -8.22021 -7.78824 -6.10610 -4.21505 1.33435 1.38003 3.42615 3.51474 3.74207 3.78139 4.37030 4.56703 4.61265 4.77158 4.82963 4.95396 5.00644 5.12853 5.23424 5.26918 5.40957 5.45038 5.47071 5.52770 5.64214 5.72296 5.79919 5.84012 5.90446 5.97567 6.02595 6.04727 6.07680 6.15680 6.17023 6.26912 6.33494 6.35588 6.44911 6.49470 6.54986 6.59148 6.69291 6.76471 6.98706 7.31050 7.50363 7.54084 7.78101 8.30617 8.85265 9.04834 9.54687 11.00130 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029026 B = 0.004098 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.410973 B = 6830.650109 C = 7070.707526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.096 3.904 3 C -0.169 4.169 4 C -0.055 4.055 5 H 0.078 0.922 6 C -0.055 4.055 7 C -0.124 4.124 8 C -0.123 4.123 9 C -0.130 4.130 10 C -0.122 4.122 11 C -0.105 4.105 12 C -0.122 4.122 13 C 0.041 3.959 14 N -0.502 5.502 15 C 0.035 3.965 16 C 0.201 3.799 17 H 0.060 0.940 18 O -0.577 6.577 19 C -0.563 4.563 20 H 0.069 0.931 21 C 0.083 3.917 22 N -0.895 5.895 23 Si 0.874 3.126 24 H -0.288 1.288 25 H -0.298 1.298 26 H -0.216 1.216 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.130 0.870 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.032 0.968 44 H 0.350 0.650 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.077 -4.330 21.364 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.006 3.994 3 C -0.227 4.227 4 C -0.074 4.074 5 H 0.096 0.904 6 C -0.055 4.055 7 C -0.142 4.142 8 C -0.141 4.141 9 C -0.148 4.148 10 C -0.140 4.140 11 C -0.123 4.123 12 C -0.160 4.160 13 C -0.087 4.087 14 N -0.226 5.226 15 C -0.093 4.093 16 C 0.144 3.856 17 H 0.078 0.922 18 O -0.383 6.383 19 C -0.601 4.601 20 H 0.087 0.913 21 C -0.121 4.121 22 N -0.532 5.532 23 Si 0.700 3.300 24 H -0.215 1.215 25 H -0.225 1.225 26 H -0.138 1.138 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.147 0.853 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.121 0.879 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.196 0.804 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.873 -5.127 20.845 22.255 hybrid contribution 0.909 0.537 -0.006 1.056 sum -4.964 -4.589 20.839 21.909 Atomic orbital electron populations 1.21947 0.93764 1.02485 1.00466 1.21768 0.95922 0.91882 0.89830 1.22449 1.01031 0.97014 1.02204 1.21153 0.94065 0.97064 0.95085 0.90357 1.19710 0.96504 0.95229 0.94050 1.21028 0.98115 1.00242 0.94774 1.21052 0.96021 0.97283 0.99752 1.21080 0.99988 0.97244 0.96530 1.21145 0.97748 1.00123 0.94975 1.21155 0.95084 0.96218 0.99813 1.22740 0.98961 0.97829 0.96462 1.23362 0.91310 0.99515 0.94519 1.64909 1.26712 1.26152 1.04805 1.22970 0.99572 0.94507 0.92273 1.19751 0.86270 0.89295 0.90290 0.92214 1.86697 1.20504 1.38882 1.92178 1.21512 1.50655 0.94550 0.93408 0.91250 1.24997 0.92729 0.98806 0.95584 1.69964 1.46321 1.35329 1.01623 0.86987 0.77426 0.86274 0.79283 1.21474 1.22504 1.13840 0.92948 0.93146 0.91388 0.92741 0.91458 0.92829 0.86539 0.86548 0.86600 0.86317 0.85262 0.91588 0.90539 0.87930 0.94541 0.91080 0.94942 0.80411 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 7.55 37.16 0.28 -1.50 16 2 C 0.10 1.33 0.84 -130.53 -0.11 1.22 16 3 C -0.17 -2.29 7.08 37.16 0.26 -2.03 16 4 C -0.05 -0.67 2.85 -90.41 -0.26 -0.92 16 5 H 0.08 0.90 7.52 -51.93 -0.39 0.51 16 6 C -0.05 -0.64 3.18 -104.62 -0.33 -0.97 16 7 C -0.12 -1.31 9.51 -39.59 -0.38 -1.68 16 8 C -0.12 -1.20 10.05 -39.59 -0.40 -1.59 16 9 C -0.13 -1.27 10.05 -39.58 -0.40 -1.66 16 10 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 11 C -0.10 -1.23 6.49 -39.58 -0.26 -1.48 16 12 C -0.12 -1.53 6.45 -24.87 -0.16 -1.69 16 13 C 0.04 0.61 5.23 -1.90 -0.01 0.60 16 14 N -0.50 -8.29 4.87 -215.00 -1.05 -9.34 16 15 C 0.03 0.67 3.38 -3.83 -0.01 0.65 16 16 C 0.20 4.63 2.58 -27.89 -0.07 4.56 16 17 H 0.06 1.47 7.57 -51.93 -0.39 1.08 16 18 O -0.58 -12.52 7.25 -35.23 -0.26 -12.77 16 19 C -0.56 -15.53 9.34 -34.44 -0.32 -15.85 16 20 H 0.07 2.07 7.99 -52.48 -0.42 1.65 16 21 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 22 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 23 Si 0.87 21.93 26.99 -169.99 -4.59 17.34 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 25 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.22 -5.26 5.31 56.52 0.30 -4.96 16 27 H 0.05 0.67 7.01 -51.93 -0.36 0.31 16 28 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.07 0.97 5.88 -51.93 -0.31 0.66 16 30 H 0.05 0.75 7.67 -51.93 -0.40 0.35 16 31 H 0.07 0.99 6.48 -51.93 -0.34 0.66 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.12 1.07 8.01 -52.48 -0.42 0.65 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.13 1.60 6.63 -52.49 -0.35 1.25 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.96 6.10 -51.93 -0.32 0.65 16 40 H 0.10 1.71 6.56 -51.93 -0.34 1.37 16 41 H 0.04 0.55 7.81 -51.93 -0.41 0.14 16 42 H 0.07 1.41 7.13 -51.93 -0.37 1.04 16 43 H 0.03 0.63 6.72 -51.93 -0.35 0.28 16 44 H 0.35 6.86 8.94 45.56 0.41 7.26 16 45 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -30.28 337.59 -9.21 -39.49 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -6.52 Total: 8.53 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -2.66 Total: -21.72 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.27 Total: -35.95 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.26 Total: -12.77 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.59 Total: 17.34 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.28 -9.21 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930755158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.470 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds