Wall clock time and date at job start Tue Mar 31 2020 05:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 110.06497 * 2 1 4 4 C 1.53998 * 109.91852 * 121.20531 * 2 1 3 5 5 H 1.08998 * 110.30816 * 239.59620 * 4 2 1 6 6 C 1.50700 * 110.30626 * 1.66290 * 4 2 1 7 7 C 1.38234 * 120.00116 * 250.65932 * 6 4 2 8 8 C 1.38229 * 120.00242 * 179.72999 * 7 6 4 9 9 C 1.38237 * 119.99847 * 0.25428 * 8 7 6 10 10 C 1.38235 * 120.00204 * 0.02562 * 9 8 7 11 11 C 1.38238 * 119.99877 * 70.89836 * 6 4 2 12 12 C 1.54599 * 105.13636 * 120.58024 * 4 2 1 13 13 C 1.54930 * 102.92476 * 21.95687 * 12 4 2 14 14 N 1.47899 * 109.91776 * 238.79843 * 2 1 3 15 15 C 1.46899 * 111.00335 * 94.80124 * 14 2 1 16 16 C 1.52994 * 109.47500 * 189.99813 * 15 14 2 17 17 H 1.09003 * 109.46704 * 60.00006 * 16 15 14 18 18 O 1.42896 * 109.47298 * 300.00429 * 16 15 14 19 19 C 1.50695 * 109.47456 * 179.97438 * 16 15 14 20 20 H 1.08003 * 119.99980 * 0.02562 * 19 16 15 21 21 C 1.37884 * 120.00356 * 180.02562 * 19 16 15 22 22 N 1.31515 * 120.00054 * 179.97438 * 21 19 16 23 23 Si 1.86794 * 119.99607 * 0.02562 * 21 19 16 24 24 H 1.48505 * 109.47241 * 90.00383 * 23 21 19 25 25 H 1.48503 * 109.47253 * 209.99899 * 23 21 19 26 26 H 1.48498 * 109.47509 * 330.00338 * 23 21 19 27 27 H 1.08997 * 109.47327 * 291.18455 * 1 2 3 28 28 H 1.09003 * 109.47068 * 51.18366 * 1 2 3 29 29 H 1.09001 * 109.47207 * 171.18467 * 1 2 3 30 30 H 1.09003 * 109.47554 * 181.20447 * 3 2 1 31 31 H 1.08996 * 109.47461 * 301.20985 * 3 2 1 32 32 H 1.09001 * 109.47074 * 61.20883 * 3 2 1 33 33 H 1.08006 * 119.99859 * 0.02562 * 7 6 4 34 34 H 1.07994 * 120.00435 * 180.27851 * 8 7 6 35 35 H 1.08001 * 120.00242 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.00331 * 179.97438 * 10 9 8 37 37 H 1.08000 * 120.00198 * 0.02562 * 11 6 4 38 38 H 1.08996 * 110.72060 * 140.31854 * 12 4 2 39 39 H 1.09001 * 110.72176 * 263.59414 * 12 4 2 40 40 H 1.08999 * 110.66916 * 204.14928 * 13 12 4 41 41 H 1.09006 * 110.66465 * 81.02190 * 13 12 4 42 42 H 1.09004 * 109.46972 * 310.00062 * 15 14 2 43 43 H 1.09003 * 109.47137 * 70.00085 * 15 14 2 44 44 H 0.96705 * 113.99642 * 299.99582 * 18 16 15 45 45 H 0.96993 * 119.99590 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0549 1.4371 0.0000 4 6 2.0546 -0.7501 1.2384 5 1 2.6699 -0.0890 1.8486 6 6 0.9046 -1.2893 2.0493 7 6 0.6022 -0.7301 3.2768 8 6 -0.4561 -1.2210 4.0182 9 6 -1.2090 -2.2747 3.5344 10 6 -0.9031 -2.8377 2.3096 11 6 0.1550 -2.3464 1.5679 12 6 2.9060 -1.9117 0.6761 13 6 3.2681 -1.4184 -0.7472 14 7 2.0338 -0.7204 -1.1894 15 6 2.3211 0.2124 -2.2873 16 6 2.5980 -0.5773 -3.5681 17 1 1.7240 -1.1777 -3.8208 18 8 3.7227 -1.4351 -3.3652 19 6 2.8920 0.3796 -4.6946 20 1 2.8829 1.4445 -4.5148 21 6 3.1729 -0.1044 -5.9548 22 7 3.4290 0.7307 -6.9379 23 14 3.1880 -1.9462 -6.2658 24 1 1.8297 -2.3915 -6.6684 25 1 4.1526 -2.2570 -7.3513 26 1 3.5937 -2.6545 -5.0253 27 1 -0.3634 0.3714 0.9582 28 1 -0.3633 0.6442 -0.8007 29 1 -0.3634 -1.0155 -0.1575 30 1 3.1447 1.4260 -0.0216 31 1 1.6794 1.9612 -0.8789 32 1 1.7146 1.9482 0.9006 33 1 1.1900 0.0935 3.6545 34 1 -0.6951 -0.7812 4.9751 35 1 -2.0362 -2.6580 4.1134 36 1 -1.4910 -3.6611 1.9318 37 1 0.3939 -2.7861 0.6109 38 1 3.8052 -2.0557 1.2749 39 1 2.3215 -2.8305 0.6289 40 1 3.4889 -2.2615 -1.4020 41 1 4.1098 -0.7266 -0.7121 42 1 1.4631 0.8666 -2.4421 43 1 3.1951 0.8128 -2.0347 44 1 4.5377 -0.9675 -3.1365 45 1 3.6269 0.3902 -7.8243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930755158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:51 Heat of formation + Delta-G solvation = -34.322929 kcal Electronic energy + Delta-G solvation = -24108.746584 eV Core-core repulsion = 20897.246843 eV Total energy + Delta-G solvation = -3211.499741 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.61052 -39.50999 -37.74192 -34.44916 -34.12809 -33.21993 -31.75113 -31.22905 -29.42048 -28.21786 -26.39942 -25.83697 -23.58559 -22.81936 -22.59882 -21.20552 -19.86332 -18.95207 -17.66495 -16.86557 -16.81363 -16.67344 -16.21699 -15.93952 -15.64386 -15.43584 -14.96027 -14.79564 -14.57707 -14.27665 -13.95384 -13.91641 -13.60196 -13.39166 -13.15171 -12.99803 -12.85594 -12.79623 -12.44814 -12.30386 -12.14950 -11.95716 -11.91122 -11.77250 -11.62647 -11.40435 -11.34058 -11.02503 -10.80111 -10.04543 -9.67621 -9.41209 -9.14870 -8.34953 -6.49137 0.54807 0.60767 1.41278 1.45881 1.76361 2.44974 2.94913 3.03474 3.11310 3.66302 3.74810 3.81529 4.06532 4.17316 4.22231 4.24837 4.34629 4.39449 4.40861 4.43359 4.51341 4.60982 4.66538 4.68361 4.74315 4.82644 4.87393 4.95478 4.99128 5.06813 5.13505 5.19758 5.24413 5.27976 5.30946 5.35747 5.45052 5.47870 5.59427 5.69135 5.73324 5.85175 6.06502 6.21889 6.25793 6.28640 6.63698 7.19646 7.35212 8.79397 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029026 B = 0.004098 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.410973 B = 6830.650109 C = 7070.707526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.094 3.906 3 C -0.165 4.165 4 C -0.046 4.046 5 H 0.091 0.909 6 C -0.066 4.066 7 C -0.129 4.129 8 C -0.126 4.126 9 C -0.132 4.132 10 C -0.131 4.131 11 C -0.118 4.118 12 C -0.114 4.114 13 C 0.040 3.960 14 N -0.512 5.512 15 C 0.053 3.947 16 C 0.212 3.788 17 H 0.047 0.953 18 O -0.573 6.573 19 C -0.564 4.564 20 H 0.034 0.966 21 C 0.029 3.971 22 N -0.941 5.941 23 Si 0.941 3.059 24 H -0.289 1.289 25 H -0.299 1.299 26 H -0.202 1.202 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.130 0.870 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.038 0.962 42 H 0.059 0.941 43 H 0.030 0.970 44 H 0.362 0.638 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.370 -5.562 24.225 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.005 3.995 3 C -0.224 4.224 4 C -0.065 4.065 5 H 0.110 0.890 6 C -0.066 4.066 7 C -0.147 4.147 8 C -0.143 4.143 9 C -0.150 4.150 10 C -0.149 4.149 11 C -0.136 4.136 12 C -0.152 4.152 13 C -0.087 4.087 14 N -0.236 5.236 15 C -0.075 4.075 16 C 0.154 3.846 17 H 0.065 0.935 18 O -0.380 6.380 19 C -0.602 4.602 20 H 0.052 0.948 21 C -0.171 4.171 22 N -0.581 5.581 23 Si 0.765 3.235 24 H -0.216 1.216 25 H -0.226 1.226 26 H -0.123 1.123 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.133 0.867 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.209 0.791 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.162 -6.358 23.731 25.329 hybrid contribution 0.959 0.973 -0.827 1.597 sum -5.203 -5.385 22.904 24.097 Atomic orbital electron populations 1.21887 0.93734 1.01818 1.00532 1.21833 0.95887 0.92152 0.89613 1.22402 1.00809 0.96731 1.02413 1.21075 0.94424 0.96768 0.94268 0.89038 1.19661 0.96580 0.95701 0.94674 1.21247 0.98520 1.00547 0.94353 1.21378 0.95428 0.97007 1.00526 1.21396 1.00408 0.96984 0.96248 1.21356 0.97573 1.00582 0.95385 1.21124 0.95990 0.96813 0.99638 1.22688 0.99823 0.97803 0.94871 1.23317 0.90759 0.98781 0.95881 1.64812 1.27584 1.25847 1.05388 1.22564 0.98939 0.94077 0.91950 1.19458 0.86118 0.88403 0.90645 0.93533 1.86628 1.20755 1.38387 1.92189 1.21842 1.49533 0.93834 0.94985 0.94787 1.25851 0.92604 1.03161 0.95468 1.70087 1.48342 1.37394 1.02262 0.85963 0.77105 0.81002 0.79410 1.21608 1.22579 1.12341 0.91689 0.94608 0.91979 0.92917 0.93318 0.90676 0.85078 0.84263 0.84463 0.85202 0.86661 0.89655 0.90734 0.89536 0.94372 0.92281 0.95135 0.79062 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.27 7.55 71.98 0.54 -2.73 16 2 C 0.09 2.52 0.84 3.67 0.00 2.52 16 3 C -0.17 -4.28 7.08 71.98 0.51 -3.78 16 4 C -0.05 -1.02 2.85 -10.66 -0.03 -1.05 16 5 H 0.09 1.80 7.52 -2.39 -0.02 1.78 16 6 C -0.07 -1.38 3.18 -19.87 -0.06 -1.44 16 7 C -0.13 -2.32 9.51 22.27 0.21 -2.11 16 8 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 9 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 10 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 11 C -0.12 -2.58 6.49 22.27 0.14 -2.43 16 12 C -0.11 -2.62 6.45 31.80 0.21 -2.41 16 13 C 0.04 1.16 5.23 86.65 0.45 1.61 16 14 N -0.51 -16.62 4.87 -834.13 -4.06 -20.67 16 15 C 0.05 2.07 3.38 86.30 0.29 2.36 16 16 C 0.21 9.77 2.58 29.84 0.08 9.85 16 17 H 0.05 2.30 7.57 -2.39 -0.02 2.28 16 18 O -0.57 -24.25 7.25 -148.98 -1.08 -25.34 16 19 C -0.56 -31.81 9.34 25.60 0.24 -31.57 16 20 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 21 C 0.03 1.67 5.47 84.66 0.46 2.13 16 22 N -0.94 -59.01 13.96 21.45 0.30 -58.71 16 23 Si 0.94 45.78 26.99 68.60 1.85 47.63 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 26 H -0.20 -9.26 5.31 99.48 0.53 -8.73 16 27 H 0.06 1.56 7.01 -2.39 -0.02 1.54 16 28 H 0.03 1.03 8.13 -2.39 -0.02 1.01 16 29 H 0.06 1.73 5.88 -2.39 -0.01 1.72 16 30 H 0.05 1.37 7.67 -2.39 -0.02 1.36 16 31 H 0.05 1.43 6.48 -2.39 -0.02 1.42 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.13 1.93 8.01 -2.91 -0.02 1.90 16 34 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 35 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 36 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.12 2.79 6.63 -2.91 -0.02 2.77 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.76 6.10 -2.39 -0.01 1.75 16 40 H 0.09 2.78 6.56 -2.39 -0.02 2.77 16 41 H 0.04 1.09 7.81 -2.38 -0.02 1.07 16 42 H 0.06 2.42 7.13 -2.39 -0.02 2.40 16 43 H 0.03 1.19 6.72 -2.39 -0.02 1.17 16 44 H 0.36 13.76 8.94 -74.05 -0.66 13.10 16 45 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -65.48 337.59 0.86 -64.61 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.13 Total: 27.55 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 3.72 Total: -35.06 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -3.76 Total: -79.39 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -1.08 Total: -25.34 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.85 Total: 47.63 kcal Total: -65.48 0.86 -64.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930755158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.288 kcal (2) G-P(sol) polarization free energy of solvation -65.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds