Wall clock time and date at job start Tue Mar 31 2020 05:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.28435 * 2 1 4 4 C 1.54263 * 110.32652 * 237.76850 * 2 1 3 5 5 C 1.54373 * 105.05916 * 241.10396 * 4 2 1 6 6 H 1.09004 * 110.40856 * 265.06737 * 5 4 2 7 7 C 1.50700 * 110.41091 * 142.63328 * 5 4 2 8 8 C 1.38239 * 119.99753 * 283.09405 * 7 5 4 9 9 C 1.38234 * 119.99790 * 179.78859 * 8 7 5 10 10 C 1.38229 * 120.00120 * 0.44580 * 9 8 7 11 11 C 1.38237 * 120.00000 * 359.81067 * 10 9 8 12 12 C 1.38229 * 119.99883 * 359.97438 * 11 10 9 13 13 N 1.48558 * 104.59618 * 23.84901 * 5 4 2 14 14 C 1.46898 * 110.99854 * 200.96073 * 13 5 4 15 15 C 1.53006 * 109.47006 * 185.29629 * 14 13 5 16 16 H 1.08993 * 109.46955 * 60.00219 * 15 14 13 17 17 O 1.42906 * 109.46752 * 299.99801 * 15 14 13 18 18 C 1.50698 * 109.47184 * 180.02562 * 15 14 13 19 19 H 1.08005 * 119.99819 * 359.97438 * 18 15 14 20 20 C 1.37875 * 120.00046 * 180.02562 * 18 15 14 21 21 N 1.31511 * 120.00192 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99979 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.47418 * 89.99710 * 22 20 18 24 24 H 1.48498 * 109.47091 * 209.99770 * 22 20 18 25 25 H 1.48508 * 109.47394 * 329.99535 * 22 20 18 26 26 C 1.48555 * 104.22078 * 320.52053 * 13 5 4 27 27 H 1.08997 * 109.47663 * 299.32359 * 1 2 3 28 28 H 1.09000 * 109.47341 * 59.33086 * 1 2 3 29 29 H 1.09003 * 109.46933 * 179.31792 * 1 2 3 30 30 H 1.09000 * 109.47233 * 180.67147 * 3 2 1 31 31 H 1.09003 * 109.47544 * 300.67637 * 3 2 1 32 32 H 1.09004 * 109.47043 * 60.67505 * 3 2 1 33 33 H 1.09003 * 110.32465 * 359.97438 * 4 2 1 34 34 H 1.08998 * 110.32678 * 122.10144 * 4 2 1 35 35 H 1.08000 * 120.00028 * 0.02562 * 8 7 5 36 36 H 1.08002 * 120.00120 * 180.27538 * 9 8 7 37 37 H 1.08001 * 120.00278 * 179.82892 * 10 9 8 38 38 H 1.07998 * 119.99989 * 180.02562 * 11 10 9 39 39 H 1.08002 * 119.99852 * 179.97438 * 12 11 10 40 40 H 1.09001 * 109.47392 * 65.29927 * 14 13 5 41 41 H 1.09001 * 109.47520 * 305.29649 * 14 13 5 42 42 H 0.96696 * 113.99911 * 300.00276 * 17 15 14 43 43 H 0.96996 * 120.00505 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.40955 * 158.26706 * 26 13 5 45 45 H 1.09002 * 110.40827 * 280.70039 * 26 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0604 1.4351 0.0000 4 6 2.0659 -0.7715 -1.2237 5 6 2.8807 -1.9427 -0.6341 6 1 3.9360 -1.6774 -0.5705 7 6 2.6987 -3.1830 -1.4704 8 6 1.5354 -3.9225 -1.3659 9 6 1.3667 -5.0578 -2.1363 10 6 2.3650 -5.4589 -3.0042 11 6 3.5305 -4.7224 -3.1047 12 6 3.6974 -3.5846 -2.3377 13 7 2.3148 -2.1459 0.7244 14 6 3.2650 -2.8579 1.5893 15 6 2.6005 -3.1647 2.9330 16 1 1.7211 -3.7875 2.7695 17 8 2.2086 -1.9422 3.5607 18 6 3.5755 -3.8945 3.8205 19 1 4.5696 -4.1176 3.4620 20 6 3.1981 -4.2784 5.0899 21 7 1.9875 -4.0073 5.5263 22 14 4.4065 -5.1837 6.1898 23 1 5.1830 -4.2003 6.9868 24 1 3.6625 -6.0857 7.1053 25 1 5.3345 -5.9848 5.3517 26 6 2.0662 -0.7699 1.2259 27 1 -0.3634 0.5033 0.8959 28 1 -0.3634 0.5242 -0.8839 29 1 -0.3633 -1.0276 -0.0122 30 1 3.1502 1.4197 -0.0120 31 1 1.6946 1.9577 -0.8839 32 1 1.7142 1.9504 0.8960 33 1 1.2389 -1.1506 -1.8241 34 1 2.7067 -0.1278 -1.8262 35 1 0.7568 -3.6110 -0.6854 36 1 0.4560 -5.6331 -2.0580 37 1 2.2343 -6.3474 -3.6040 38 1 4.3103 -5.0355 -3.7831 39 1 4.6081 -3.0094 -2.4159 40 1 4.1445 -2.2351 1.7529 41 1 3.5640 -3.7903 1.1105 42 1 2.9424 -1.3376 3.7367 43 1 1.7219 -4.2776 6.4191 44 1 1.3214 -0.7840 2.0216 45 1 2.9941 -0.3212 1.5806 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930763604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:01 Heat of formation + Delta-G solvation = -31.521625 kcal Electronic energy + Delta-G solvation = -23966.512366 eV Core-core repulsion = 20755.134098 eV Total energy + Delta-G solvation = -3211.378268 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.92074 -38.24170 -35.87537 -33.69698 -32.13877 -31.51777 -30.63496 -28.77634 -27.72529 -27.13246 -25.44068 -23.94907 -22.59485 -22.09098 -20.42621 -19.80076 -18.76925 -16.97025 -16.62281 -15.49230 -15.11427 -14.66291 -14.48073 -14.46195 -14.07890 -13.98168 -13.51233 -13.35377 -13.11549 -13.05464 -12.83037 -12.58006 -12.46196 -12.01118 -11.61999 -11.52993 -11.41930 -11.12429 -10.94479 -10.90875 -10.83348 -10.73595 -10.55699 -10.35523 -10.32154 -10.06827 -9.95538 -8.98050 -8.67771 -8.55369 -8.45380 -8.11997 -7.73478 -5.98125 -4.15962 1.57264 1.66042 3.28436 3.35659 3.38608 3.99730 4.36314 4.53665 4.78255 4.93860 5.10632 5.13551 5.16316 5.20881 5.28890 5.39121 5.48147 5.52076 5.65320 5.75254 5.78557 5.84001 5.88185 5.94674 6.06179 6.08617 6.14439 6.19101 6.22817 6.30706 6.32513 6.34753 6.39209 6.48852 6.61084 6.67019 6.76924 6.78217 6.92574 6.97274 7.24557 7.49503 7.60167 7.79483 7.97606 8.23978 8.87236 9.40603 9.60895 11.05939 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012655 B = 0.005614 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.037552 B = 4986.525184 C = 6505.625252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.076 4.076 3 C -0.136 4.136 4 C -0.103 4.103 5 C 0.094 3.906 6 H 0.050 0.950 7 C -0.062 4.062 8 C -0.083 4.083 9 C -0.126 4.126 10 C -0.128 4.128 11 C -0.127 4.127 12 C -0.121 4.121 13 N -0.492 5.492 14 C 0.024 3.976 15 C 0.239 3.761 16 H 0.062 0.938 17 O -0.560 6.560 18 C -0.572 4.572 19 H 0.053 0.947 20 C 0.081 3.919 21 N -0.858 5.858 22 Si 0.887 3.113 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.051 3.949 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.132 0.868 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.021 0.979 41 H 0.066 0.934 42 H 0.339 0.661 43 H 0.260 0.740 44 H 0.106 0.894 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.071 5.658 -15.891 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.076 4.076 3 C -0.194 4.194 4 C -0.141 4.141 5 C -0.015 4.015 6 H 0.068 0.932 7 C -0.063 4.063 8 C -0.101 4.101 9 C -0.144 4.144 10 C -0.146 4.146 11 C -0.145 4.145 12 C -0.139 4.139 13 N -0.216 5.216 14 C -0.104 4.104 15 C 0.182 3.818 16 H 0.080 0.920 17 O -0.362 6.362 18 C -0.610 4.610 19 H 0.071 0.929 20 C -0.125 4.125 21 N -0.493 5.493 22 Si 0.714 3.286 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.077 4.077 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.150 0.850 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.039 0.961 41 H 0.085 0.915 42 H 0.182 0.818 43 H 0.069 0.931 44 H 0.124 0.876 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.295 5.024 -15.780 16.611 hybrid contribution 2.246 -0.037 0.734 2.363 sum 0.951 4.987 -15.046 15.879 Atomic orbital electron populations 1.21784 0.93936 1.02193 1.00772 1.21407 0.96182 0.94574 0.95462 1.21870 1.00436 0.95626 1.01468 1.22463 0.99282 0.95373 0.97005 1.21562 0.97007 0.91936 0.90996 0.93183 1.19716 0.94188 0.96237 0.96118 1.21108 0.97744 0.93967 0.97297 1.21187 0.99099 0.97268 0.96843 1.21070 0.94302 0.99744 0.99521 1.20992 0.97685 0.95778 1.00072 1.20990 0.98565 0.97158 0.97216 1.65361 1.40956 1.15159 1.00101 1.23191 0.92999 0.97251 0.96975 1.19309 0.94888 0.83124 0.84512 0.92033 1.86593 1.36238 1.30592 1.82763 1.21628 0.99716 1.39704 0.99974 0.92892 1.25002 0.94875 0.94737 0.97912 1.70076 1.17592 1.44117 1.17560 0.86706 0.81356 0.79851 0.80647 1.20608 1.21104 1.19891 1.23350 1.00563 0.87426 0.96324 0.92729 0.93577 0.91908 0.93028 0.93003 0.92479 0.91064 0.91878 0.84984 0.86398 0.86716 0.86664 0.86758 0.96051 0.91547 0.81820 0.93053 0.87590 0.94712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.23 37.16 0.31 -1.35 16 2 C -0.08 -1.00 1.03 -153.13 -0.16 -1.16 16 3 C -0.14 -1.55 8.24 37.16 0.31 -1.25 16 4 C -0.10 -1.35 5.83 -25.35 -0.15 -1.50 16 5 C 0.09 1.42 2.46 -67.23 -0.17 1.26 16 6 H 0.05 0.77 7.90 -51.93 -0.41 0.36 16 7 C -0.06 -0.93 4.56 -104.62 -0.48 -1.41 16 8 C -0.08 -1.27 9.22 -39.58 -0.37 -1.63 16 9 C -0.13 -1.71 10.05 -39.59 -0.40 -2.11 16 10 C -0.13 -1.61 10.05 -39.59 -0.40 -2.00 16 11 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 12 C -0.12 -1.65 9.68 -39.59 -0.38 -2.03 16 13 N -0.49 -8.76 4.29 -223.51 -0.96 -9.72 16 14 C 0.02 0.50 4.54 -3.82 -0.02 0.48 16 15 C 0.24 6.03 3.08 -27.88 -0.09 5.95 16 16 H 0.06 1.76 8.14 -51.93 -0.42 1.34 16 17 O -0.56 -13.86 9.70 -35.23 -0.34 -14.20 16 18 C -0.57 -15.76 8.76 -34.44 -0.30 -16.07 16 19 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 20 C 0.08 2.27 5.40 -17.82 -0.10 2.18 16 21 N -0.86 -25.39 12.84 55.43 0.71 -24.68 16 22 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.05 0.84 4.12 -2.19 -0.01 0.83 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.93 7.32 -51.93 -0.38 0.55 16 34 H 0.06 0.74 7.71 -51.93 -0.40 0.34 16 35 H 0.13 2.14 7.70 -52.49 -0.40 1.73 16 36 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.11 1.37 8.05 -52.49 -0.42 0.95 16 40 H 0.02 0.44 7.88 -51.93 -0.41 0.03 16 41 H 0.07 1.44 7.86 -51.93 -0.41 1.03 16 42 H 0.34 7.62 8.90 45.56 0.41 8.03 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.11 2.00 6.27 -51.93 -0.33 1.68 16 45 H 0.03 0.58 7.51 -51.93 -0.39 0.19 16 LS Contribution 357.32 15.07 5.38 5.38 Total: -1.00 -29.60 357.32 -9.93 -39.53 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -6.91 Total: 9.18 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -2.79 Total: -21.80 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.25 Total: -34.40 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.34 Total: -14.20 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.60 -9.93 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930763604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.009 kcal (2) G-P(sol) polarization free energy of solvation -29.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds