Wall clock time and date at job start Tue Mar 31 2020 05:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.28435 * 2 1 4 4 C 1.54263 * 110.32652 * 237.76850 * 2 1 3 5 5 C 1.54373 * 105.05916 * 241.10396 * 4 2 1 6 6 H 1.09004 * 110.40856 * 265.06737 * 5 4 2 7 7 C 1.50700 * 110.41091 * 142.63328 * 5 4 2 8 8 C 1.38239 * 119.99753 * 283.09405 * 7 5 4 9 9 C 1.38234 * 119.99790 * 179.78859 * 8 7 5 10 10 C 1.38229 * 120.00120 * 0.44580 * 9 8 7 11 11 C 1.38237 * 120.00000 * 359.81067 * 10 9 8 12 12 C 1.38229 * 119.99883 * 359.97438 * 11 10 9 13 13 N 1.48558 * 104.59618 * 23.84901 * 5 4 2 14 14 C 1.46898 * 110.99854 * 200.96073 * 13 5 4 15 15 C 1.53006 * 109.47006 * 185.29629 * 14 13 5 16 16 H 1.08993 * 109.46955 * 60.00219 * 15 14 13 17 17 O 1.42906 * 109.46752 * 299.99801 * 15 14 13 18 18 C 1.50698 * 109.47184 * 180.02562 * 15 14 13 19 19 H 1.08005 * 119.99819 * 359.97438 * 18 15 14 20 20 C 1.37875 * 120.00046 * 180.02562 * 18 15 14 21 21 N 1.31511 * 120.00192 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99979 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.47418 * 89.99710 * 22 20 18 24 24 H 1.48498 * 109.47091 * 209.99770 * 22 20 18 25 25 H 1.48508 * 109.47394 * 329.99535 * 22 20 18 26 26 C 1.48555 * 104.22078 * 320.52053 * 13 5 4 27 27 H 1.08997 * 109.47663 * 299.32359 * 1 2 3 28 28 H 1.09000 * 109.47341 * 59.33086 * 1 2 3 29 29 H 1.09003 * 109.46933 * 179.31792 * 1 2 3 30 30 H 1.09000 * 109.47233 * 180.67147 * 3 2 1 31 31 H 1.09003 * 109.47544 * 300.67637 * 3 2 1 32 32 H 1.09004 * 109.47043 * 60.67505 * 3 2 1 33 33 H 1.09003 * 110.32465 * 359.97438 * 4 2 1 34 34 H 1.08998 * 110.32678 * 122.10144 * 4 2 1 35 35 H 1.08000 * 120.00028 * 0.02562 * 8 7 5 36 36 H 1.08002 * 120.00120 * 180.27538 * 9 8 7 37 37 H 1.08001 * 120.00278 * 179.82892 * 10 9 8 38 38 H 1.07998 * 119.99989 * 180.02562 * 11 10 9 39 39 H 1.08002 * 119.99852 * 179.97438 * 12 11 10 40 40 H 1.09001 * 109.47392 * 65.29927 * 14 13 5 41 41 H 1.09001 * 109.47520 * 305.29649 * 14 13 5 42 42 H 0.96696 * 113.99911 * 300.00276 * 17 15 14 43 43 H 0.96996 * 120.00505 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.40955 * 158.26706 * 26 13 5 45 45 H 1.09002 * 110.40827 * 280.70039 * 26 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0604 1.4351 0.0000 4 6 2.0659 -0.7715 -1.2237 5 6 2.8807 -1.9427 -0.6341 6 1 3.9360 -1.6774 -0.5705 7 6 2.6987 -3.1830 -1.4704 8 6 1.5354 -3.9225 -1.3659 9 6 1.3667 -5.0578 -2.1363 10 6 2.3650 -5.4589 -3.0042 11 6 3.5305 -4.7224 -3.1047 12 6 3.6974 -3.5846 -2.3377 13 7 2.3148 -2.1459 0.7244 14 6 3.2650 -2.8579 1.5893 15 6 2.6005 -3.1647 2.9330 16 1 1.7211 -3.7875 2.7695 17 8 2.2086 -1.9422 3.5607 18 6 3.5755 -3.8945 3.8205 19 1 4.5696 -4.1176 3.4620 20 6 3.1981 -4.2784 5.0899 21 7 1.9875 -4.0073 5.5263 22 14 4.4065 -5.1837 6.1898 23 1 5.1830 -4.2003 6.9868 24 1 3.6625 -6.0857 7.1053 25 1 5.3345 -5.9848 5.3517 26 6 2.0662 -0.7699 1.2259 27 1 -0.3634 0.5033 0.8959 28 1 -0.3634 0.5242 -0.8839 29 1 -0.3633 -1.0276 -0.0122 30 1 3.1502 1.4197 -0.0120 31 1 1.6946 1.9577 -0.8839 32 1 1.7142 1.9504 0.8960 33 1 1.2389 -1.1506 -1.8241 34 1 2.7067 -0.1278 -1.8262 35 1 0.7568 -3.6110 -0.6854 36 1 0.4560 -5.6331 -2.0580 37 1 2.2343 -6.3474 -3.6040 38 1 4.3103 -5.0355 -3.7831 39 1 4.6081 -3.0094 -2.4159 40 1 4.1445 -2.2351 1.7529 41 1 3.5640 -3.7903 1.1105 42 1 2.9424 -1.3376 3.7367 43 1 1.7219 -4.2776 6.4191 44 1 1.3214 -0.7840 2.0216 45 1 2.9941 -0.3212 1.5806 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930763604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:01 Heat of formation + Delta-G solvation = -49.148718 kcal Electronic energy + Delta-G solvation = -23967.276734 eV Core-core repulsion = 20755.134098 eV Total energy + Delta-G solvation = -3212.142636 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.14064 -39.37533 -37.71385 -35.02483 -34.26622 -32.83233 -31.67786 -30.35726 -29.10439 -28.11824 -27.08535 -25.45258 -23.80972 -23.26330 -22.18977 -21.05793 -19.91998 -18.98353 -17.76118 -16.74605 -16.68490 -16.43951 -16.13062 -15.89959 -15.48668 -15.23166 -14.83300 -14.60127 -14.43132 -14.16552 -14.08430 -13.90716 -13.75298 -13.24845 -13.15322 -12.99093 -12.92723 -12.73481 -12.51416 -12.46659 -12.22618 -12.03401 -11.88389 -11.74096 -11.42733 -11.41207 -11.30314 -11.02686 -10.72268 -10.07092 -9.72894 -9.49263 -9.24515 -8.13965 -6.39992 0.52061 0.60341 1.38254 1.39167 1.49948 2.37154 2.91999 3.11549 3.19004 3.64089 3.78350 3.98981 4.08642 4.10960 4.21721 4.24347 4.34329 4.38113 4.42438 4.48355 4.53574 4.62755 4.72394 4.80359 4.83510 4.88219 4.89496 5.00952 5.05630 5.10529 5.14195 5.20582 5.23256 5.26880 5.34594 5.49246 5.54584 5.61786 5.64298 5.70837 5.73313 5.80063 6.01313 6.16524 6.24520 6.28341 6.72514 7.32226 7.53564 8.90265 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012655 B = 0.005614 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.037552 B = 4986.525184 C = 6505.625252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 C -0.131 4.131 4 C -0.095 4.095 5 C 0.095 3.905 6 H 0.051 0.949 7 C -0.079 4.079 8 C -0.105 4.105 9 C -0.136 4.136 10 C -0.129 4.129 11 C -0.126 4.126 12 C -0.129 4.129 13 N -0.504 5.504 14 C 0.047 3.953 15 C 0.245 3.755 16 H 0.017 0.983 17 O -0.567 6.567 18 C -0.588 4.588 19 H 0.054 0.946 20 C 0.028 3.972 21 N -0.897 5.897 22 Si 0.958 3.042 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.267 1.267 26 C 0.053 3.947 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.130 0.870 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.131 0.869 40 H 0.024 0.976 41 H 0.054 0.946 42 H 0.348 0.652 43 H 0.261 0.739 44 H 0.075 0.925 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 5.959 -17.686 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.070 4.070 3 C -0.189 4.189 4 C -0.132 4.132 5 C -0.013 4.013 6 H 0.069 0.931 7 C -0.079 4.079 8 C -0.124 4.124 9 C -0.154 4.154 10 C -0.147 4.147 11 C -0.144 4.144 12 C -0.147 4.147 13 N -0.227 5.227 14 C -0.081 4.081 15 C 0.187 3.813 16 H 0.035 0.965 17 O -0.370 6.370 18 C -0.626 4.626 19 H 0.073 0.927 20 C -0.174 4.174 21 N -0.534 5.534 22 Si 0.783 3.217 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.192 1.192 26 C -0.075 4.075 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.128 0.872 36 H 0.148 0.852 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.193 0.807 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.281 5.336 -17.590 18.383 hybrid contribution 1.711 -0.153 1.248 2.123 sum 1.992 5.183 -16.342 17.259 Atomic orbital electron populations 1.21751 0.93687 1.01192 1.01759 1.21377 0.96367 0.95551 0.93751 1.21831 1.00591 0.93958 1.02509 1.22437 0.99308 0.94682 0.96814 1.21609 0.97182 0.93236 0.89266 0.93086 1.19783 0.94712 0.96438 0.96973 1.21052 0.97802 0.95385 0.98119 1.21411 1.00227 0.96847 0.96872 1.21429 0.93768 1.00469 0.99013 1.21380 0.98283 0.94969 0.99763 1.21236 0.98649 0.97838 0.96980 1.65260 1.40401 1.15930 1.01142 1.22699 0.93012 0.97254 0.95174 1.19027 0.92874 0.82730 0.86661 0.96506 1.86551 1.36815 1.30527 1.83111 1.21999 1.00053 1.39897 1.00649 0.92749 1.25858 0.96602 0.95493 0.99464 1.70215 1.19610 1.45508 1.18060 0.85587 0.78963 0.78630 0.78558 1.19631 1.20780 1.19170 1.23252 0.99683 0.87315 0.97237 0.93027 0.91212 0.93970 0.92723 0.90876 0.92525 0.91103 0.89561 0.87188 0.85184 0.83951 0.83755 0.85144 0.95821 0.92713 0.80737 0.92990 0.90629 0.94914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.23 71.98 0.59 -2.59 16 2 C -0.07 -1.79 1.03 -51.29 -0.05 -1.85 16 3 C -0.13 -2.70 8.24 71.98 0.59 -2.11 16 4 C -0.09 -2.33 5.83 31.49 0.18 -2.15 16 5 C 0.10 2.86 2.46 44.31 0.11 2.97 16 6 H 0.05 1.52 7.90 -2.38 -0.02 1.50 16 7 C -0.08 -2.34 4.56 -19.87 -0.09 -2.43 16 8 C -0.11 -3.29 9.22 22.27 0.21 -3.08 16 9 C -0.14 -3.63 10.05 22.27 0.22 -3.40 16 10 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 11 C -0.13 -2.83 10.05 22.27 0.22 -2.60 16 12 C -0.13 -3.28 9.68 22.27 0.22 -3.06 16 13 N -0.50 -18.53 4.29 -861.07 -3.70 -22.23 16 14 C 0.05 2.04 4.54 86.31 0.39 2.43 16 15 C 0.24 12.92 3.08 29.85 0.09 13.01 16 16 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 17 O -0.57 -29.31 9.70 -148.98 -1.44 -30.76 16 18 C -0.59 -33.13 8.76 25.60 0.22 -32.91 16 19 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 20 C 0.03 1.62 5.40 84.65 0.46 2.08 16 21 N -0.90 -54.49 12.84 21.45 0.28 -54.21 16 22 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 C 0.05 1.78 4.12 86.45 0.36 2.14 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.07 1.77 7.32 -2.39 -0.02 1.76 16 34 H 0.09 1.76 7.71 -2.39 -0.02 1.74 16 35 H 0.11 3.83 7.70 -2.91 -0.02 3.81 16 36 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.13 2.82 8.05 -2.91 -0.02 2.80 16 40 H 0.02 1.00 7.88 -2.39 -0.02 0.98 16 41 H 0.05 2.46 7.86 -2.39 -0.02 2.44 16 42 H 0.35 16.23 8.90 -74.06 -0.66 15.57 16 43 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.08 3.01 6.27 -2.39 -0.01 3.00 16 45 H 0.03 1.10 7.51 -2.39 -0.02 1.09 16 Total: -1.00 -65.42 357.32 1.40 -64.02 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: 0.29 Total: 33.34 kcal Atomic # 6 Polarization: -40.22 SS G_CDS: 3.95 Total: -36.28 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -3.42 Total: -76.44 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -1.44 Total: -30.76 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -65.42 1.40 -64.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930763604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.869 kcal (2) G-P(sol) polarization free energy of solvation -65.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds