Wall clock time and date at job start Tue Mar 31 2020 06:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47292 * 2 1 4 4 C 1.50703 * 109.47506 * 120.00200 * 2 1 3 5 5 C 1.38262 * 120.06618 * 300.00394 * 4 2 1 6 6 C 1.38032 * 119.83074 * 180.02562 * 5 4 2 7 7 C 1.38675 * 120.34719 * 359.97061 * 6 5 4 8 8 C 1.37840 * 119.85169 * 359.88531 * 7 6 5 9 9 C 1.38018 * 120.06638 * 119.97854 * 4 2 1 10 10 C 1.50621 * 121.84759 * 180.45024 * 8 7 6 11 11 N 1.46627 * 110.49224 * 342.40727 * 10 8 7 12 12 C 1.46891 * 111.00447 * 289.13521 * 11 10 8 13 13 C 1.52995 * 109.47392 * 293.95377 * 12 11 10 14 14 H 1.09002 * 109.47282 * 59.99593 * 13 12 11 15 15 O 1.42904 * 109.47169 * 300.00212 * 13 12 11 16 16 C 1.50701 * 109.47524 * 179.97438 * 13 12 11 17 17 H 1.07996 * 119.99934 * 0.02562 * 16 13 12 18 18 C 1.37872 * 120.00016 * 180.02562 * 16 13 12 19 19 N 1.31515 * 120.00024 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99925 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47429 * 59.99617 * 20 18 16 22 22 H 1.48505 * 109.47159 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47159 * 299.99467 * 20 18 16 24 24 C 1.46943 * 110.20078 * 52.53908 * 11 10 8 25 25 C 1.50718 * 118.49040 * 179.84194 * 7 6 5 26 26 H 1.09001 * 109.47437 * 299.99494 * 1 2 3 27 27 H 1.08993 * 109.47597 * 60.00187 * 1 2 3 28 28 H 1.09013 * 109.46976 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47613 * 239.99997 * 2 1 3 30 30 H 1.09001 * 109.46466 * 59.99912 * 3 2 1 31 31 H 1.08994 * 109.47173 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46863 * 300.00607 * 3 2 1 33 33 H 1.07997 * 120.08224 * 0.02562 * 5 4 2 34 34 H 1.07999 * 119.82632 * 179.97438 * 6 5 4 35 35 H 1.07999 * 119.81293 * 0.05803 * 9 4 2 36 36 H 1.08994 * 109.30158 * 102.72632 * 10 8 7 37 37 H 1.09002 * 109.29554 * 222.30460 * 10 8 7 38 38 H 1.09007 * 109.47387 * 53.95612 * 12 11 10 39 39 H 1.09002 * 109.47239 * 173.94944 * 12 11 10 40 40 H 0.96705 * 113.99621 * 299.99504 * 15 13 12 41 41 H 0.97005 * 119.99978 * 180.02562 * 19 18 16 42 42 H 1.09008 * 109.50233 * 168.99890 * 24 11 10 43 43 H 1.08993 * 109.64753 * 48.48520 * 24 11 10 44 44 H 1.09002 * 109.38890 * 283.28503 * 25 7 6 45 45 H 1.08996 * 109.39152 * 43.08430 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6992 -0.2394 2.4869 6 6 2.1625 -0.8935 3.6106 7 6 2.9599 -2.0212 3.4860 8 6 3.2900 -2.4931 2.2336 9 6 2.8256 -1.8330 1.1053 10 6 4.1445 -3.7192 2.0461 11 7 4.8687 -4.0340 3.2816 12 6 5.9250 -3.0463 3.5390 13 6 6.9969 -3.1508 2.4523 14 1 6.5472 -2.9565 1.4785 15 8 7.5599 -4.4643 2.4633 16 6 8.0803 -2.1371 2.7160 17 1 8.0115 -1.4839 3.5733 18 6 9.1593 -2.0436 1.8629 19 7 9.2434 -2.8394 0.8193 20 14 10.5026 -0.7875 2.1902 21 1 11.1158 -1.0525 3.5165 22 1 11.5423 -0.8881 1.1346 23 1 9.9174 0.5774 2.1793 24 6 3.9333 -4.1119 4.4122 25 6 3.4456 -2.7006 4.7406 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.0780 0.6382 2.5888 34 1 1.9025 -0.5253 4.5920 35 1 3.0857 -2.1998 0.1234 36 1 3.5097 -4.5629 1.7756 37 1 4.8634 -3.5384 1.2469 38 1 5.4956 -2.0444 3.5306 39 1 6.3747 -3.2406 4.5128 40 1 7.9784 -4.7057 3.3010 41 1 10.0028 -2.7738 0.2192 42 1 4.4435 -4.5338 5.2782 43 1 3.0839 -4.7394 4.1425 44 1 4.2658 -2.1249 5.1696 45 1 2.6289 -2.7583 5.4602 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930961996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:52 Heat of formation + Delta-G solvation = -38.610853 kcal Electronic energy + Delta-G solvation = -23678.736435 eV Core-core repulsion = 20467.050755 eV Total energy + Delta-G solvation = -3211.685680 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.32046 -37.91589 -35.58686 -34.46562 -32.29385 -32.03386 -30.48427 -28.79728 -28.16589 -27.21184 -25.35199 -23.87461 -23.08544 -22.07325 -21.18944 -20.21340 -18.22290 -16.93273 -16.15359 -15.82706 -15.21744 -14.89380 -14.55746 -14.44560 -14.25569 -13.91698 -13.72000 -13.53485 -13.40574 -13.14867 -12.79691 -12.45297 -12.35955 -12.31262 -12.04249 -11.50163 -11.44360 -11.20765 -11.13812 -11.02775 -10.90929 -10.87596 -10.74440 -10.66874 -10.44160 -10.29380 -10.00405 -8.93182 -8.53849 -8.48636 -8.18820 -8.05795 -7.62934 -5.96663 -4.14491 1.53654 1.59615 3.30744 3.35903 3.37735 3.89158 4.36977 4.57377 4.64682 4.78395 4.96914 5.11237 5.13677 5.16366 5.29359 5.31075 5.37088 5.41421 5.52733 5.57007 5.64912 5.72384 5.75025 5.82583 5.88894 5.92129 6.00791 6.08582 6.11349 6.16958 6.19238 6.26899 6.29928 6.34352 6.44528 6.60641 6.62320 6.79067 6.84874 6.92666 7.22823 7.55620 7.64894 7.81875 7.92487 8.25099 8.88997 9.50498 9.67043 11.07521 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014254 B = 0.004998 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.954643 B = 5601.192257 C = 6672.189942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.081 4.081 5 C -0.121 4.121 6 C -0.119 4.119 7 C -0.079 4.079 8 C -0.095 4.095 9 C -0.110 4.110 10 C 0.087 3.913 11 N -0.514 5.514 12 C 0.026 3.974 13 C 0.238 3.762 14 H 0.053 0.947 15 O -0.555 6.555 16 C -0.573 4.573 17 H 0.052 0.948 18 C 0.081 3.919 19 N -0.859 5.859 20 Si 0.887 3.113 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.051 3.949 25 C -0.118 4.118 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.034 0.966 39 H 0.061 0.939 40 H 0.342 0.658 41 H 0.260 0.740 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.957 3.671 2.645 17.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.201 4.201 4 C -0.081 4.081 5 C -0.139 4.139 6 C -0.137 4.137 7 C -0.080 4.080 8 C -0.097 4.097 9 C -0.128 4.128 10 C -0.042 4.042 11 N -0.234 5.234 12 C -0.101 4.101 13 C 0.180 3.820 14 H 0.071 0.929 15 O -0.357 6.357 16 C -0.611 4.611 17 H 0.071 0.929 18 C -0.125 4.125 19 N -0.495 5.495 20 Si 0.714 3.286 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.078 4.078 25 C -0.156 4.156 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.185 0.815 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.837 3.122 1.800 17.218 hybrid contribution 0.573 1.815 0.905 2.108 sum -16.264 4.937 2.705 17.210 Atomic orbital electron populations 1.21838 0.94642 1.01819 1.01583 1.20101 0.95606 0.96079 0.95658 1.21852 1.01685 0.95082 1.01504 1.19716 0.98099 0.95806 0.94463 1.20770 1.01121 0.99957 0.92045 1.20989 0.98709 0.95760 0.98269 1.19514 0.97989 0.96153 0.94296 1.20522 0.98079 0.98491 0.92589 1.21001 0.98049 0.95493 0.98305 1.21222 0.95307 0.92615 0.95006 1.62628 1.10665 1.48693 1.01458 1.23120 0.93126 0.92178 1.01684 1.19304 0.88360 0.81656 0.92670 0.92909 1.86555 1.76852 1.34300 1.37967 1.21609 1.07317 1.20506 1.11700 0.92927 1.24996 0.97877 0.95030 0.94594 1.70070 1.29765 1.36268 1.13364 0.86773 0.81746 0.82030 0.78029 1.20134 1.21169 1.20267 1.22194 0.95957 0.94437 0.95174 1.21130 1.01048 0.98470 0.94969 0.92647 0.92614 0.92644 0.90504 0.92653 0.92227 0.92613 0.86694 0.86688 0.86175 0.90181 0.88469 0.94757 0.92040 0.81474 0.92989 0.90572 0.91235 0.90340 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.01 37.15 0.33 -0.98 16 2 C -0.06 -0.62 3.09 -91.77 -0.28 -0.91 16 3 C -0.14 -1.52 9.01 37.16 0.33 -1.19 16 4 C -0.08 -1.10 4.77 -104.69 -0.50 -1.60 16 5 C -0.12 -1.59 8.72 -39.65 -0.35 -1.93 16 6 C -0.12 -1.65 9.66 -39.50 -0.38 -2.03 16 7 C -0.08 -1.22 5.05 -104.60 -0.53 -1.75 16 8 C -0.10 -1.56 5.20 -104.62 -0.54 -2.11 16 9 C -0.11 -1.68 9.28 -39.48 -0.37 -2.05 16 10 C 0.09 1.52 5.43 -5.16 -0.03 1.50 16 11 N -0.51 -9.40 4.89 -236.39 -1.16 -10.55 16 12 C 0.03 0.55 3.56 -3.83 -0.01 0.54 16 13 C 0.24 6.08 2.71 -27.89 -0.08 6.00 16 14 H 0.05 1.49 6.35 -51.93 -0.33 1.16 16 15 O -0.56 -14.58 12.60 -35.23 -0.44 -15.03 16 16 C -0.57 -15.92 8.76 -34.44 -0.30 -16.22 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 18 C 0.08 2.29 5.40 -17.82 -0.10 2.20 16 19 N -0.86 -25.61 12.84 55.43 0.71 -24.90 16 20 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.05 0.75 6.01 -3.85 -0.02 0.73 16 25 C -0.12 -1.65 5.17 -27.93 -0.14 -1.79 16 26 H 0.05 0.49 7.40 -51.93 -0.38 0.11 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 29 H 0.08 0.85 7.87 -51.93 -0.41 0.44 16 30 H 0.05 0.56 7.40 -51.93 -0.38 0.17 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.12 1.27 7.12 -52.49 -0.37 0.89 16 34 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.12 1.71 7.94 -52.49 -0.42 1.29 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.10 1.94 6.02 -51.93 -0.31 1.63 16 38 H 0.03 0.74 5.87 -51.93 -0.30 0.44 16 39 H 0.06 1.26 8.09 -51.93 -0.42 0.84 16 40 H 0.34 8.11 9.04 45.56 0.41 8.52 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 43 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 44 H 0.08 1.17 7.04 -51.93 -0.37 0.81 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -30.79 351.31 -10.21 -40.99 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.63 Total: 9.39 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -2.96 Total: -21.59 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: -0.44 Total: -35.45 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.44 Total: -15.03 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.79 -10.21 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930961996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.384 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds