Wall clock time and date at job start Tue Mar 31 2020 06:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47292 * 2 1 4 4 C 1.50703 * 109.47506 * 120.00200 * 2 1 3 5 5 C 1.38262 * 120.06618 * 300.00394 * 4 2 1 6 6 C 1.38032 * 119.83074 * 180.02562 * 5 4 2 7 7 C 1.38675 * 120.34719 * 359.97061 * 6 5 4 8 8 C 1.37840 * 119.85169 * 359.88531 * 7 6 5 9 9 C 1.38018 * 120.06638 * 119.97854 * 4 2 1 10 10 C 1.50621 * 121.84759 * 180.45024 * 8 7 6 11 11 N 1.46627 * 110.49224 * 342.40727 * 10 8 7 12 12 C 1.46891 * 111.00447 * 289.13521 * 11 10 8 13 13 C 1.52995 * 109.47392 * 293.95377 * 12 11 10 14 14 H 1.09002 * 109.47282 * 59.99593 * 13 12 11 15 15 O 1.42904 * 109.47169 * 300.00212 * 13 12 11 16 16 C 1.50701 * 109.47524 * 179.97438 * 13 12 11 17 17 H 1.07996 * 119.99934 * 0.02562 * 16 13 12 18 18 C 1.37872 * 120.00016 * 180.02562 * 16 13 12 19 19 N 1.31515 * 120.00024 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99925 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47429 * 59.99617 * 20 18 16 22 22 H 1.48505 * 109.47159 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47159 * 299.99467 * 20 18 16 24 24 C 1.46943 * 110.20078 * 52.53908 * 11 10 8 25 25 C 1.50718 * 118.49040 * 179.84194 * 7 6 5 26 26 H 1.09001 * 109.47437 * 299.99494 * 1 2 3 27 27 H 1.08993 * 109.47597 * 60.00187 * 1 2 3 28 28 H 1.09013 * 109.46976 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47613 * 239.99997 * 2 1 3 30 30 H 1.09001 * 109.46466 * 59.99912 * 3 2 1 31 31 H 1.08994 * 109.47173 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46863 * 300.00607 * 3 2 1 33 33 H 1.07997 * 120.08224 * 0.02562 * 5 4 2 34 34 H 1.07999 * 119.82632 * 179.97438 * 6 5 4 35 35 H 1.07999 * 119.81293 * 0.05803 * 9 4 2 36 36 H 1.08994 * 109.30158 * 102.72632 * 10 8 7 37 37 H 1.09002 * 109.29554 * 222.30460 * 10 8 7 38 38 H 1.09007 * 109.47387 * 53.95612 * 12 11 10 39 39 H 1.09002 * 109.47239 * 173.94944 * 12 11 10 40 40 H 0.96705 * 113.99621 * 299.99504 * 15 13 12 41 41 H 0.97005 * 119.99978 * 180.02562 * 19 18 16 42 42 H 1.09008 * 109.50233 * 168.99890 * 24 11 10 43 43 H 1.08993 * 109.64753 * 48.48520 * 24 11 10 44 44 H 1.09002 * 109.38890 * 283.28503 * 25 7 6 45 45 H 1.08996 * 109.39152 * 43.08430 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6992 -0.2394 2.4869 6 6 2.1625 -0.8935 3.6106 7 6 2.9599 -2.0212 3.4860 8 6 3.2900 -2.4931 2.2336 9 6 2.8256 -1.8330 1.1053 10 6 4.1445 -3.7192 2.0461 11 7 4.8687 -4.0340 3.2816 12 6 5.9250 -3.0463 3.5390 13 6 6.9969 -3.1508 2.4523 14 1 6.5472 -2.9565 1.4785 15 8 7.5599 -4.4643 2.4633 16 6 8.0803 -2.1371 2.7160 17 1 8.0115 -1.4839 3.5733 18 6 9.1593 -2.0436 1.8629 19 7 9.2434 -2.8394 0.8193 20 14 10.5026 -0.7875 2.1902 21 1 11.1158 -1.0525 3.5165 22 1 11.5423 -0.8881 1.1346 23 1 9.9174 0.5774 2.1793 24 6 3.9333 -4.1119 4.4122 25 6 3.4456 -2.7006 4.7406 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.0780 0.6382 2.5888 34 1 1.9025 -0.5253 4.5920 35 1 3.0857 -2.1998 0.1234 36 1 3.5097 -4.5629 1.7756 37 1 4.8634 -3.5384 1.2469 38 1 5.4956 -2.0444 3.5306 39 1 6.3747 -3.2406 4.5128 40 1 7.9784 -4.7057 3.3010 41 1 10.0028 -2.7738 0.2192 42 1 4.4435 -4.5338 5.2782 43 1 3.0839 -4.7394 4.1425 44 1 4.2658 -2.1249 5.1696 45 1 2.6289 -2.7583 5.4602 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930961996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:51 Heat of formation + Delta-G solvation = -58.291817 kcal Electronic energy + Delta-G solvation = -23679.589866 eV Core-core repulsion = 20467.050755 eV Total energy + Delta-G solvation = -3212.539110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.52465 -39.18194 -37.31363 -35.71210 -34.21674 -33.46084 -31.81382 -30.18642 -29.66293 -27.99026 -27.18088 -25.21756 -24.33128 -23.26662 -22.72408 -21.47566 -19.57397 -18.92472 -17.23674 -17.05999 -16.72946 -16.55300 -16.36347 -15.76514 -15.71903 -15.35277 -14.85675 -14.67797 -14.59460 -14.38099 -14.19421 -14.05902 -13.50299 -13.29190 -13.12267 -13.05376 -12.94967 -12.81173 -12.51392 -12.50342 -12.42483 -12.15292 -12.03089 -11.93182 -11.84344 -11.56186 -11.46155 -10.95059 -10.68197 -10.08817 -9.64158 -9.30392 -9.10233 -8.13091 -6.38998 0.42523 0.46416 1.38721 1.40573 1.48673 2.37773 2.77849 3.11024 3.15281 3.65079 3.79892 3.89283 4.02328 4.09161 4.13644 4.25048 4.30789 4.31825 4.36926 4.48607 4.51500 4.58613 4.63099 4.70939 4.76396 4.79943 4.88013 4.93452 4.94434 4.97425 5.03355 5.07918 5.11395 5.17070 5.26679 5.32820 5.38282 5.51313 5.60614 5.70344 5.72955 5.77109 6.03570 6.13546 6.22163 6.28418 6.74078 7.35001 7.63731 8.91303 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014254 B = 0.004998 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.954643 B = 5601.192257 C = 6672.189942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.058 4.058 3 C -0.142 4.142 4 C -0.082 4.082 5 C -0.120 4.120 6 C -0.121 4.121 7 C -0.095 4.095 8 C -0.117 4.117 9 C -0.132 4.132 10 C 0.093 3.907 11 N -0.527 5.527 12 C 0.052 3.948 13 C 0.240 3.760 14 H 0.016 0.984 15 O -0.570 6.570 16 C -0.589 4.589 17 H 0.056 0.944 18 C 0.028 3.972 19 N -0.899 5.899 20 Si 0.957 3.043 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.271 1.271 24 C 0.051 3.949 25 C -0.112 4.112 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.025 0.975 39 H 0.068 0.932 40 H 0.352 0.648 41 H 0.261 0.739 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.403 5.236 4.267 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.076 4.076 3 C -0.199 4.199 4 C -0.082 4.082 5 C -0.138 4.138 6 C -0.139 4.139 7 C -0.096 4.096 8 C -0.118 4.118 9 C -0.151 4.151 10 C -0.036 4.036 11 N -0.247 5.247 12 C -0.076 4.076 13 C 0.182 3.818 14 H 0.034 0.966 15 O -0.374 6.374 16 C -0.627 4.627 17 H 0.074 0.926 18 C -0.174 4.174 19 N -0.536 5.536 20 Si 0.781 3.219 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.196 1.196 24 C -0.077 4.077 25 C -0.150 4.150 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.133 0.867 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.086 0.914 40 H 0.197 0.803 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.087 0.913 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.298 4.685 3.440 19.199 hybrid contribution 0.960 1.303 0.359 1.658 sum -17.338 5.988 3.799 18.732 Atomic orbital electron populations 1.21797 0.92785 1.01934 1.02803 1.20163 0.97074 0.96072 0.94299 1.21839 1.00313 0.94847 1.02879 1.20018 0.97155 0.95042 0.95977 1.21117 1.00740 1.00425 0.91493 1.21321 0.97833 0.95000 0.99770 1.19754 0.98596 0.97066 0.94159 1.20469 0.98974 0.98602 0.93778 1.21140 0.99209 0.96711 0.98003 1.21041 0.94702 0.94101 0.93725 1.62543 1.11543 1.47652 1.02995 1.22621 0.92683 0.92494 0.99810 1.19136 0.89182 0.80965 0.92543 0.96636 1.86499 1.77292 1.34593 1.38977 1.22006 1.08048 1.20935 1.11712 0.92608 1.25864 1.00400 0.96968 0.94209 1.70218 1.30641 1.38259 1.14475 0.85661 0.78598 0.79351 0.78266 1.18935 1.20826 1.19622 1.22306 0.95723 0.95598 0.94081 1.21099 1.01686 0.97246 0.94954 0.91805 0.91014 0.93097 0.91109 0.91745 0.94338 0.90801 0.84027 0.84105 0.86715 0.89036 0.92234 0.95660 0.91379 0.80338 0.93003 0.89296 0.89829 0.91304 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.01 71.98 0.65 -1.58 16 2 C -0.06 -1.22 3.09 -11.54 -0.04 -1.25 16 3 C -0.14 -2.78 9.01 71.98 0.65 -2.13 16 4 C -0.08 -2.17 4.77 -19.91 -0.10 -2.26 16 5 C -0.12 -2.89 8.72 22.23 0.19 -2.69 16 6 C -0.12 -3.08 9.66 22.33 0.22 -2.86 16 7 C -0.10 -2.83 5.05 -19.85 -0.10 -2.93 16 8 C -0.12 -3.90 5.20 -19.87 -0.10 -4.01 16 9 C -0.13 -4.17 9.28 22.34 0.21 -3.96 16 10 C 0.09 3.40 5.43 85.58 0.46 3.87 16 11 N -0.53 -19.46 4.89 -901.81 -4.41 -23.86 16 12 C 0.05 2.21 3.56 86.30 0.31 2.51 16 13 C 0.24 12.71 2.71 29.85 0.08 12.79 16 14 H 0.02 0.95 6.35 -2.39 -0.02 0.94 16 15 O -0.57 -30.96 12.60 -148.98 -1.88 -32.83 16 16 C -0.59 -33.31 8.76 25.60 0.22 -33.08 16 17 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 18 C 0.03 1.61 5.40 84.65 0.46 2.06 16 19 N -0.90 -55.03 12.84 21.45 0.28 -54.76 16 20 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 24 C 0.05 1.42 6.01 86.26 0.52 1.94 16 25 C -0.11 -2.90 5.17 29.82 0.15 -2.75 16 26 H 0.06 0.94 7.40 -2.39 -0.02 0.92 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.07 1.56 7.87 -2.39 -0.02 1.54 16 30 H 0.06 1.13 7.40 -2.39 -0.02 1.12 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.14 2.61 7.12 -2.91 -0.02 2.59 16 34 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 35 H 0.11 3.56 7.94 -2.91 -0.02 3.54 16 36 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.06 2.60 6.02 -2.39 -0.01 2.59 16 38 H 0.03 1.11 5.87 -2.38 -0.01 1.10 16 39 H 0.07 2.77 8.09 -2.39 -0.02 2.75 16 40 H 0.35 17.05 9.04 -74.05 -0.67 16.38 16 41 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 42 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 43 H 0.08 2.12 8.04 -2.39 -0.02 2.10 16 44 H 0.07 1.94 7.04 -2.39 -0.02 1.92 16 45 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -67.50 351.31 0.10 -67.39 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: 0.30 Total: 34.21 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 3.79 Total: -36.34 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -4.13 Total: -78.62 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -1.88 Total: -32.83 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -67.50 0.10 -67.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930961996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.100 kcal (2) G-P(sol) polarization free energy of solvation -67.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds