Wall clock time and date at job start Tue Mar 31 2020 06:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47189 * 2 1 4 4 C 1.53004 * 109.47101 * 240.00214 * 2 1 3 5 5 C 1.53001 * 109.47323 * 120.00351 * 2 1 3 6 6 C 1.50702 * 109.47084 * 65.59227 * 5 2 1 7 7 C 1.37978 * 120.07556 * 269.76150 * 6 5 2 8 8 C 1.38330 * 120.14665 * 180.25514 * 7 6 5 9 9 C 1.38383 * 120.28998 * 359.44588 * 8 7 6 10 10 C 1.37930 * 120.14740 * 0.55138 * 9 8 7 11 11 C 1.39554 * 120.07169 * 89.74094 * 6 5 2 12 12 C 1.47847 * 120.14496 * 359.97438 * 11 6 5 13 13 O 1.21542 * 120.00122 * 6.04979 * 12 11 6 14 14 N 1.34778 * 119.99760 * 186.04701 * 12 11 6 15 15 C 1.46504 * 120.00005 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47360 * 180.02562 * 15 14 12 17 17 C 1.50695 * 109.47087 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00250 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99868 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00213 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00058 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46975 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46976 * 119.99747 * 21 19 17 24 24 H 1.48503 * 109.47319 * 240.00287 * 21 19 17 25 25 H 1.09006 * 109.47141 * 299.99624 * 1 2 3 26 26 H 1.09001 * 109.47672 * 59.99781 * 1 2 3 27 27 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47296 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47618 * 300.00313 * 3 2 1 30 30 H 1.09006 * 109.47293 * 60.00207 * 3 2 1 31 31 H 1.09004 * 109.47179 * 293.21848 * 4 2 1 32 32 H 1.08998 * 109.46998 * 53.21265 * 4 2 1 33 33 H 1.09001 * 109.46926 * 173.21421 * 4 2 1 34 34 H 1.09001 * 109.46905 * 305.59669 * 5 2 1 35 35 H 1.08996 * 109.47542 * 185.59307 * 5 2 1 36 36 H 1.07998 * 119.92815 * 359.97438 * 7 6 5 37 37 H 1.08000 * 119.85937 * 179.70499 * 8 7 6 38 38 H 1.08009 * 119.92917 * 180.28088 * 9 8 7 39 39 H 1.08004 * 120.07882 * 179.74828 * 10 9 8 40 40 H 0.96997 * 120.00410 * 0.02562 * 14 12 11 41 41 H 1.08996 * 109.47132 * 300.00505 * 15 14 12 42 42 H 1.09007 * 109.46643 * 59.99990 * 15 14 12 43 43 H 1.08996 * 109.47279 * 300.00254 * 16 15 14 44 44 H 1.09004 * 109.46894 * 60.00173 * 16 15 14 45 45 H 0.97000 * 120.00376 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.6539 -2.1765 1.1818 7 6 0.4539 -2.5989 1.7159 8 6 0.1004 -3.9351 1.6596 9 6 0.9413 -4.8548 1.0579 10 6 2.1438 -4.4458 0.5200 11 6 2.5092 -3.0997 0.5787 12 6 3.7961 -2.6540 0.0034 13 8 4.1622 -1.5044 0.1511 14 7 4.5634 -3.5224 -0.6847 15 6 5.8390 -3.0809 -1.2543 16 6 6.5059 -4.2513 -1.9798 17 6 7.8182 -3.7973 -2.5651 18 1 8.1439 -2.7760 -2.4333 19 6 8.6027 -4.6854 -3.2699 20 7 8.2056 -5.9286 -3.4318 21 14 10.2292 -4.1225 -3.9961 22 1 10.4443 -2.6884 -3.6759 23 1 11.3344 -4.9292 -3.4193 24 1 10.2019 -4.3023 -5.4700 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1299 1.4424 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.7791 -1.7780 -1.1907 32 1 1.5808 -0.2823 -2.1351 33 1 3.1232 -0.6172 -1.3121 34 1 1.5971 -0.2686 2.1364 35 1 3.1253 -0.6354 1.3007 36 1 -0.2089 -1.8855 2.1830 37 1 -0.8379 -4.2614 2.0833 38 1 0.6574 -5.8959 1.0131 39 1 2.8011 -5.1651 0.0543 40 1 4.2712 -4.4397 -0.8029 41 1 5.6603 -2.2703 -1.9607 42 1 6.4914 -2.7291 -0.4550 43 1 6.6846 -5.0622 -1.2737 44 1 5.8533 -4.6026 -2.7791 45 1 8.7573 -6.5533 -3.9280 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935339497.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:38 Heat of formation + Delta-G solvation = -48.256897 kcal Electronic energy + Delta-G solvation = -23388.807869 eV Core-core repulsion = 20176.703905 eV Total energy + Delta-G solvation = -3212.103964 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.73130 -39.39594 -38.03147 -36.53368 -34.85830 -32.64592 -32.49996 -31.04855 -28.18604 -28.05908 -27.64073 -26.67938 -24.51974 -23.17248 -22.25429 -21.48000 -19.79748 -18.70427 -18.33193 -16.95583 -16.74886 -16.65121 -16.48585 -15.98528 -15.74502 -15.68523 -15.07293 -14.98868 -14.61890 -14.38561 -14.25992 -13.75397 -13.33569 -13.27925 -13.15108 -13.01923 -12.91607 -12.63782 -12.56886 -12.50294 -12.46983 -12.20343 -12.08267 -11.68498 -11.60394 -11.50525 -11.38951 -11.34497 -10.61960 -10.29806 -10.03006 -9.79711 -9.54428 -8.25393 -6.35906 -0.05072 0.45597 1.40036 1.40984 1.54124 1.95131 2.24989 2.45021 2.92735 3.09463 3.77177 3.80564 3.88785 4.01443 4.06032 4.17004 4.28896 4.45805 4.48053 4.48307 4.57953 4.70344 4.73400 4.79829 4.83370 4.86903 4.94760 4.95762 5.03102 5.09618 5.12014 5.17165 5.21147 5.35327 5.40261 5.45508 5.51311 5.52351 5.55454 5.56099 5.56316 5.77102 5.84075 6.03258 6.15024 6.63387 6.77474 7.30973 7.33624 8.86777 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020217 B = 0.003719 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.622868 B = 7526.200242 C = 8565.810900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 C -0.135 4.135 4 C -0.145 4.145 5 C -0.100 4.100 6 C -0.025 4.025 7 C -0.130 4.130 8 C -0.088 4.088 9 C -0.134 4.134 10 C -0.097 4.097 11 C -0.154 4.154 12 C 0.547 3.453 13 O -0.555 6.555 14 N -0.718 5.718 15 C 0.145 3.855 16 C 0.023 3.977 17 C -0.546 4.546 18 H 0.059 0.941 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.965 3.035 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.276 1.276 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.130 0.870 40 H 0.405 0.595 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.007 0.993 44 H 0.007 0.993 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.274 6.078 10.580 23.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.049 4.049 3 C -0.192 4.192 4 C -0.202 4.202 5 C -0.137 4.137 6 C -0.026 4.026 7 C -0.148 4.148 8 C -0.105 4.105 9 C -0.152 4.152 10 C -0.115 4.115 11 C -0.157 4.157 12 C 0.337 3.663 13 O -0.436 6.436 14 N -0.369 5.369 15 C 0.021 3.979 16 C -0.015 4.015 17 C -0.584 4.584 18 H 0.077 0.923 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.789 3.211 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.170 0.830 39 H 0.148 0.852 40 H 0.241 0.759 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.026 0.974 44 H 0.025 0.975 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.933 6.726 10.584 23.549 hybrid contribution 1.196 -0.567 -0.801 1.547 sum -18.736 6.160 9.784 22.016 Atomic orbital electron populations 1.21937 0.93448 1.02003 1.02199 1.20270 0.95947 0.94903 0.93741 1.21799 1.00282 0.95082 1.02062 1.22145 1.01125 0.99568 0.97338 1.21227 1.04431 0.90107 0.97907 1.20071 0.93346 0.95438 0.93705 1.21317 0.95641 0.97066 1.00766 1.21729 1.00087 0.92551 0.96183 1.21401 0.93615 1.01487 0.98713 1.21541 0.97832 0.93977 0.98189 1.19795 0.95118 0.95353 1.05435 1.18753 0.84593 0.84962 0.78011 1.90559 1.74109 1.18932 1.60034 1.46148 1.21545 1.14567 1.54622 1.21194 0.82930 0.97790 0.95946 1.19133 0.94819 0.92968 0.94571 1.21480 1.05119 0.97275 1.34518 0.92319 1.25864 1.01998 0.94873 0.96363 1.70060 1.39634 1.04932 1.41986 0.85400 0.78849 0.78719 0.78107 1.18966 1.20166 1.20182 0.91214 0.92727 0.92525 0.94323 0.92420 0.91397 0.93912 0.93548 0.93438 0.90329 0.88937 0.83343 0.82435 0.83028 0.85215 0.75921 0.93516 0.93456 0.97426 0.97493 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.07 71.98 0.58 -1.96 16 2 C -0.05 -1.16 0.79 -52.18 -0.04 -1.20 16 3 C -0.13 -3.07 8.47 71.98 0.61 -2.46 16 4 C -0.14 -4.27 6.85 71.98 0.49 -3.77 16 5 C -0.10 -2.53 4.06 29.85 0.12 -2.41 16 6 C -0.02 -0.60 4.02 -19.61 -0.08 -0.68 16 7 C -0.13 -2.33 7.98 22.23 0.18 -2.16 16 8 C -0.09 -1.32 10.04 22.33 0.22 -1.10 16 9 C -0.13 -2.34 10.03 22.23 0.22 -2.12 16 10 C -0.10 -2.25 9.53 22.53 0.21 -2.04 16 11 C -0.15 -4.35 4.57 -20.09 -0.09 -4.44 16 12 C 0.55 19.27 6.24 86.79 0.54 19.82 16 13 O -0.55 -21.99 10.54 -3.85 -0.04 -22.03 16 14 N -0.72 -26.29 5.51 -465.97 -2.57 -28.86 16 15 C 0.14 6.38 5.61 86.38 0.48 6.86 16 16 C 0.02 1.16 5.09 29.85 0.15 1.31 16 17 C -0.55 -30.81 9.11 25.60 0.23 -30.58 16 18 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 19 C 0.01 0.44 5.46 84.66 0.46 0.90 16 20 N -0.93 -54.64 13.29 21.45 0.28 -54.36 16 21 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 1.03 6.30 -2.39 -0.02 1.02 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.04 1.30 5.41 -2.38 -0.01 1.29 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.70 5.78 -2.39 -0.01 1.69 16 34 H 0.08 1.63 8.08 -2.39 -0.02 1.61 16 35 H 0.09 3.00 5.03 -6.78 -0.03 2.97 16 36 H 0.15 1.92 8.05 -2.91 -0.02 1.89 16 37 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 38 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 39 H 0.13 2.82 6.45 -2.91 -0.02 2.80 16 40 H 0.40 13.12 6.54 -92.71 -0.61 12.52 16 41 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -66.12 351.34 4.35 -61.76 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.34 Total: 23.57 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 4.31 Total: -26.04 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -2.28 Total: -83.21 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.04 Total: -22.03 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -66.12 4.35 -61.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935339497.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.508 kcal (2) G-P(sol) polarization free energy of solvation -66.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds