Wall clock time and date at job start Tue Mar 31 2020 06:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35901 * 117.00363 * 2 1 4 4 C 1.38753 * 120.05036 * 359.97438 * 3 2 1 5 5 C 1.38129 * 119.93882 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05563 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.93950 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.47215 * 89.99782 * 7 6 5 9 9 C 1.47961 * 111.00005 * 169.99576 * 8 7 6 10 10 C 1.53934 * 86.17939 * 137.58072 * 9 8 7 11 11 C 1.50703 * 113.73399 * 221.81705 * 10 9 8 12 12 H 1.07999 * 119.99920 * 358.09577 * 11 10 9 13 13 C 1.37877 * 119.99669 * 178.10223 * 11 10 9 14 14 N 1.31521 * 119.99589 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 120.00327 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47056 * 90.00030 * 15 13 11 17 17 H 1.48501 * 109.47403 * 209.99911 * 15 13 11 18 18 H 1.48493 * 109.47309 * 330.00170 * 15 13 11 19 19 C 1.48296 * 111.00409 * 269.34877 * 8 7 6 20 20 C 1.38240 * 120.11321 * 0.28566 * 6 5 4 21 21 C 1.38168 * 120.05758 * 359.45815 * 20 6 5 22 22 C 1.50699 * 120.03234 * 180.24410 * 21 20 6 23 23 C 1.52991 * 109.47275 * 300.27748 * 22 21 20 24 24 C 1.53000 * 109.46620 * 60.27863 * 22 21 20 25 25 H 1.09003 * 109.47170 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47199 * 300.00137 * 1 2 3 27 27 H 1.08997 * 109.47009 * 60.00411 * 1 2 3 28 28 H 1.07994 * 120.03327 * 0.05153 * 4 3 2 29 29 H 1.07998 * 119.96605 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47251 * 329.99358 * 7 6 5 31 31 H 1.09004 * 109.46551 * 209.99724 * 7 6 5 32 32 H 1.09007 * 113.75652 * 23.26342 * 9 8 7 33 33 H 1.08993 * 113.76177 * 251.90248 * 9 8 7 34 34 H 1.09002 * 113.73279 * 90.64057 * 10 9 8 35 35 H 0.96995 * 119.99785 * 179.97438 * 14 13 11 36 36 H 1.09001 * 113.86054 * 108.14174 * 19 8 7 37 37 H 1.09000 * 113.76062 * 336.68481 * 19 8 7 38 38 H 1.08005 * 119.97257 * 179.70625 * 20 6 5 39 39 H 1.09005 * 109.47056 * 180.27452 * 22 21 20 40 40 H 1.09000 * 109.46894 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.47322 * 299.99824 * 23 22 21 42 42 H 1.09005 * 109.47321 * 59.99866 * 23 22 21 43 43 H 1.08997 * 109.47340 * 59.99997 * 24 22 21 44 44 H 1.09000 * 109.47139 * 179.97438 * 24 22 21 45 45 H 1.09005 * 109.47070 * 299.99580 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0005 7 6 3.9862 5.0184 -0.0005 8 7 4.2079 5.4551 1.3845 9 6 5.0841 6.6464 1.4310 10 6 4.1169 7.1887 2.4987 11 6 3.7983 8.6532 2.3407 12 1 4.2630 9.2248 1.5509 13 6 2.9136 9.2633 3.2045 14 7 2.6359 10.5415 3.0669 15 14 2.1094 8.2745 4.5701 16 1 2.9554 8.3349 5.7891 17 1 0.7698 8.8414 4.8688 18 1 1.9637 6.8613 4.1382 19 6 3.0614 6.2547 1.8797 20 6 4.0560 2.5170 -0.0054 21 6 3.4312 1.2847 0.0004 22 6 4.2537 0.0220 0.0007 23 6 5.1365 -0.0119 -1.2484 24 6 5.1362 -0.0114 1.2500 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.2128 2.3204 -0.0001 29 1 1.3340 4.5113 -0.0011 30 1 3.3584 5.7461 -0.5149 31 1 4.9443 4.9379 -0.5140 32 1 5.0880 7.2251 0.5073 33 1 6.0854 6.4406 1.8094 34 1 4.3947 6.9220 3.5184 35 1 2.0133 10.9706 3.6743 36 1 2.4476 5.7363 2.6164 37 1 2.4748 6.7191 1.0870 38 1 5.1345 2.5751 -0.0098 39 1 3.5909 -0.8434 0.0008 40 1 5.7317 -0.9250 -1.2480 41 1 4.5078 0.0120 -2.1385 42 1 5.7993 0.8535 -1.2485 43 1 4.5073 0.0127 2.1399 44 1 5.7309 -0.9249 1.2505 45 1 5.7990 0.8539 1.2500 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139616508.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:30 Heat of formation + Delta-G solvation = 8.003031 kcal Electronic energy + Delta-G solvation = -23050.565274 eV Core-core repulsion = 19840.900924 eV Total energy + Delta-G solvation = -3209.664350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.41503 -38.96076 -37.56396 -35.48747 -32.73747 -31.50521 -29.94168 -28.75654 -27.34664 -27.17467 -25.33177 -25.19505 -23.44587 -22.39849 -20.85619 -19.69150 -18.60037 -18.01697 -17.00472 -16.54601 -15.82318 -15.26136 -15.16000 -14.50386 -14.46143 -14.20454 -14.09340 -13.69999 -13.58362 -13.38443 -13.04512 -12.60335 -12.41119 -12.16256 -12.13247 -12.05281 -11.78668 -11.76968 -11.23911 -11.16029 -11.02926 -10.99157 -10.64441 -10.51075 -10.28796 -9.98432 -9.88061 -9.51000 -9.15137 -8.70957 -8.57404 -8.04806 -7.89074 -6.10867 -4.11036 1.44150 1.53121 3.21934 3.29349 3.37834 3.42726 3.80118 4.41965 4.61929 4.74146 4.79865 4.89380 4.98959 5.06072 5.15141 5.17929 5.21111 5.21733 5.30892 5.41723 5.47869 5.57012 5.63120 5.70756 5.78607 5.81077 5.84701 5.95309 5.99478 6.12303 6.15015 6.20715 6.24221 6.33743 6.44825 6.46707 6.51593 6.55434 6.76041 6.80024 6.86458 7.08168 7.37469 7.39547 7.70145 7.85512 8.48287 8.92119 9.52322 11.01763 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.003840 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.696890 B = 7290.409100 C = 7940.838887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.117 3.883 4 C -0.205 4.205 5 C -0.076 4.076 6 C -0.091 4.091 7 C 0.060 3.940 8 N -0.483 5.483 9 C 0.012 3.988 10 C -0.002 4.002 11 C -0.514 4.514 12 H 0.073 0.927 13 C 0.074 3.926 14 N -0.900 5.900 15 Si 0.873 3.127 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.254 1.254 19 C -0.004 4.004 20 C -0.062 4.062 21 C -0.109 4.109 22 C -0.048 4.048 23 C -0.142 4.142 24 C -0.143 4.143 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.264 0.736 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.126 0.874 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.955 -21.927 -7.853 23.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.072 3.928 4 C -0.223 4.223 5 C -0.095 4.095 6 C -0.092 4.092 7 C -0.068 4.068 8 N -0.206 5.206 9 C -0.117 4.117 10 C -0.021 4.021 11 C -0.551 4.551 12 H 0.092 0.908 13 C -0.129 4.129 14 N -0.538 5.538 15 Si 0.700 3.300 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.179 1.179 19 C -0.133 4.133 20 C -0.081 4.081 21 C -0.110 4.110 22 C -0.067 4.067 23 C -0.199 4.199 24 C -0.200 4.200 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.144 0.856 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.783 -22.567 -7.463 23.782 hybrid contribution -1.216 0.556 0.245 1.359 sum -1.999 -22.012 -7.218 23.251 Atomic orbital electron populations 1.23002 0.78872 1.03493 1.01315 1.86011 1.20894 1.27135 1.89163 1.18754 0.91764 0.83920 0.98362 1.21128 0.99634 0.92306 1.09256 1.20860 0.94250 0.96928 0.97454 1.19716 0.93200 0.95125 1.01160 1.21544 0.99266 0.92863 0.93153 1.68600 1.09134 1.26696 1.16168 1.23876 0.97476 0.90241 1.00060 1.20734 0.91482 0.95278 0.94650 1.20989 1.26167 0.92021 1.15960 0.90850 1.25000 0.96088 0.94578 0.97192 1.69916 1.35278 1.10321 1.38252 0.86935 0.78788 0.81632 0.82665 1.20314 1.21559 1.17855 1.24550 0.94655 0.94617 0.99489 1.20653 0.99639 0.90288 0.97517 1.19133 0.90099 0.95544 1.06192 1.19918 0.96057 0.95167 0.95532 1.21847 0.99270 1.01645 0.97150 1.21851 0.99336 1.01627 0.97180 0.88578 0.92777 0.92858 0.85850 0.86037 0.93244 0.90998 0.91987 0.91164 0.93023 0.92638 0.91537 0.91745 0.85641 0.90059 0.92656 0.92793 0.92479 0.92651 0.92725 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.82 9.26 -19.43 -0.18 -4.00 16 3 C 0.12 1.57 6.66 -39.22 -0.26 1.31 16 4 C -0.20 -2.72 9.04 -39.43 -0.36 -3.08 16 5 C -0.08 -1.12 9.69 -39.60 -0.38 -1.50 16 6 C -0.09 -1.39 5.44 -104.60 -0.57 -1.96 16 7 C 0.06 0.97 4.92 -4.97 -0.02 0.95 16 8 N -0.48 -9.22 6.15 -239.48 -1.47 -10.69 16 9 C 0.01 0.24 7.50 -2.76 -0.02 0.22 16 10 C 0.00 -0.05 2.88 -90.84 -0.26 -0.31 16 11 C -0.51 -14.14 9.33 -34.44 -0.32 -14.46 16 12 H 0.07 2.19 8.06 -52.49 -0.42 1.76 16 13 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 14 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 15 Si 0.87 21.21 27.08 -169.99 -4.60 16.61 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.25 -5.88 5.27 56.52 0.30 -5.58 16 19 C 0.00 -0.09 6.61 -2.57 -0.02 -0.11 16 20 C -0.06 -0.87 8.36 -39.61 -0.33 -1.20 16 21 C -0.11 -1.44 4.79 -104.47 -0.50 -1.94 16 22 C -0.05 -0.54 3.06 -91.78 -0.28 -0.82 16 23 C -0.14 -1.36 9.00 37.15 0.33 -1.02 16 24 C -0.14 -1.49 9.01 37.16 0.33 -1.16 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.43 7.66 -51.92 -0.40 0.03 16 27 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.12 1.36 6.30 -52.49 -0.33 1.03 16 29 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 30 H 0.05 0.82 7.33 -51.93 -0.38 0.44 16 31 H 0.07 1.06 8.02 -51.93 -0.42 0.64 16 32 H 0.06 1.23 7.88 -51.92 -0.41 0.82 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.05 1.23 7.20 -51.93 -0.37 0.86 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.07 1.44 6.82 -51.93 -0.35 1.09 16 37 H 0.06 1.39 7.43 -51.93 -0.39 1.00 16 38 H 0.13 1.60 7.10 -52.48 -0.37 1.23 16 39 H 0.08 0.93 6.99 -51.93 -0.36 0.56 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.54 7.38 -51.93 -0.38 0.15 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.63 7.41 -51.93 -0.38 0.24 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -30.33 355.98 -9.45 -39.79 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -7.57 Total: 1.21 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -1.77 Total: -21.87 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.70 Total: -37.10 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -0.18 Total: -4.00 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.60 Total: 16.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.33 -9.45 -39.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139616508.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.788 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds