Wall clock time and date at job start Tue Mar 31 2020 06:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.46757 * 2 1 4 4 C 1.35905 * 116.99747 * 179.97438 * 3 2 1 5 5 C 1.38756 * 120.05631 * 359.97438 * 4 3 2 6 6 C 1.38124 * 119.94347 * 179.74406 * 5 4 3 7 7 C 1.38285 * 120.05389 * 0.55465 * 6 5 4 8 8 C 1.50702 * 119.94571 * 179.72038 * 7 6 5 9 9 N 1.46902 * 109.47215 * 269.72917 * 8 7 6 10 10 C 1.47961 * 111.00005 * 169.99576 * 9 8 7 11 11 C 1.53934 * 86.17939 * 137.58072 * 10 9 8 12 12 C 1.50703 * 113.73399 * 221.81705 * 11 10 9 13 13 H 1.07999 * 119.99920 * 358.09577 * 12 11 10 14 14 C 1.37877 * 119.99669 * 178.10223 * 12 11 10 15 15 N 1.31510 * 120.00506 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99624 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47014 * 59.99839 * 16 14 12 18 18 H 1.48503 * 109.47043 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47160 * 300.00101 * 16 14 12 20 20 C 1.48296 * 111.00409 * 269.34877 * 9 8 7 21 21 C 1.38246 * 120.11156 * 359.45038 * 7 6 5 22 22 C 1.38163 * 120.05671 * 0.27153 * 21 7 6 23 23 C 1.50697 * 120.02811 * 179.97438 * 22 21 7 24 24 C 1.53011 * 109.47052 * 265.00030 * 23 22 21 25 25 H 1.09007 * 109.46905 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47058 * 299.99424 * 1 2 3 27 27 H 1.08996 * 109.46978 * 59.99848 * 1 2 3 28 28 H 1.08998 * 109.47058 * 240.00576 * 2 1 3 29 29 H 1.09000 * 109.47298 * 120.00538 * 2 1 3 30 30 H 1.08003 * 120.02635 * 0.02562 * 5 4 3 31 31 H 1.07994 * 119.96972 * 180.27252 * 6 5 4 32 32 H 1.09001 * 109.47251 * 149.72492 * 8 7 6 33 33 H 1.09004 * 109.46551 * 29.72859 * 8 7 6 34 34 H 1.09007 * 113.75652 * 23.26342 * 10 9 8 35 35 H 1.08993 * 113.76177 * 251.90248 * 10 9 8 36 36 H 1.09002 * 113.73279 * 90.64057 * 11 10 9 37 37 H 0.96995 * 120.00309 * 180.02562 * 15 14 12 38 38 H 1.09001 * 113.86054 * 108.14174 * 20 9 8 39 39 H 1.09000 * 113.76062 * 336.68481 * 20 9 8 40 40 H 1.08005 * 119.97019 * 180.25625 * 21 7 6 41 41 H 1.09007 * 109.47647 * 24.99628 * 23 22 21 42 42 H 1.09002 * 109.47197 * 145.00305 * 23 22 21 43 43 H 1.09000 * 109.46237 * 300.00051 * 24 23 22 44 44 H 1.08993 * 109.46929 * 59.99817 * 24 23 22 45 45 H 1.08995 * 109.46683 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4258 0.0016 6 6 5.5689 0.6095 -0.0032 7 6 6.0961 1.8879 0.0025 8 6 7.5902 2.0855 0.0037 9 7 8.0745 2.1500 1.3890 10 6 9.5527 2.1035 1.4366 11 6 9.4504 3.2075 2.5044 12 6 10.4763 4.3002 2.3474 13 1 11.2112 4.2415 1.5582 14 6 10.4768 5.3746 3.2114 15 7 9.5823 5.4458 4.1729 16 14 11.7490 6.7287 3.0172 17 1 11.6116 7.3480 1.6745 18 1 11.5358 7.7618 4.0625 19 1 13.1104 6.1529 3.1598 20 6 8.0830 3.5477 1.8845 21 6 5.2550 2.9851 0.0016 22 6 3.8850 2.8067 0.0006 23 6 2.9687 4.0031 0.0002 24 6 2.5578 4.3313 1.4371 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.7886 -0.5728 0.0016 31 1 6.2280 -0.2460 -0.0068 32 1 7.8341 3.0152 -0.5103 33 1 8.0673 1.2506 -0.5096 34 1 10.0322 2.4286 0.5133 35 1 9.9504 1.1619 1.8151 36 1 9.3874 2.8272 3.5240 37 1 9.5824 6.2019 4.7805 38 1 7.3075 3.7593 2.6207 39 1 8.1337 4.2944 1.0920 40 1 5.6693 3.9825 0.0019 41 1 3.4875 4.8580 -0.4336 42 1 2.0798 3.7798 -0.5899 43 1 2.0390 3.4764 1.8707 44 1 3.4466 4.5545 2.0271 45 1 1.8947 5.1964 1.4367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139618814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:41 Heat of formation + Delta-G solvation = 2.059084 kcal Electronic energy + Delta-G solvation = -22791.707479 eV Core-core repulsion = 19581.785380 eV Total energy + Delta-G solvation = -3209.922099 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.27403 -38.76723 -37.41165 -34.25541 -32.72994 -31.97684 -30.94390 -29.42000 -27.82743 -25.37653 -24.89430 -24.13564 -23.60008 -22.36210 -21.13903 -19.94407 -18.53247 -18.01943 -16.60322 -16.20250 -16.14318 -15.21671 -14.85347 -14.39424 -14.34064 -14.09329 -13.85661 -13.64662 -13.37999 -13.30964 -13.07012 -12.67733 -12.48153 -12.07619 -11.88362 -11.69933 -11.66874 -11.51355 -11.40355 -11.10100 -10.93190 -10.84881 -10.66237 -10.62316 -10.44031 -10.19723 -9.70151 -9.20802 -8.99264 -8.62909 -8.43879 -7.87233 -7.77279 -6.03357 -4.08164 1.53043 1.62422 3.18097 3.30553 3.35858 3.37827 3.89629 4.41526 4.70877 4.73453 4.84953 4.91522 5.00544 5.04064 5.18479 5.22773 5.27136 5.37622 5.42733 5.53386 5.55476 5.58469 5.62491 5.76950 5.80361 5.89682 5.98748 6.05175 6.07071 6.17211 6.27549 6.37446 6.41538 6.50123 6.53646 6.63273 6.67008 6.81561 6.91819 6.97454 7.19283 7.28553 7.50369 7.74451 7.93162 8.11299 8.38630 8.94044 9.56582 11.05947 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024421 B = 0.003354 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.298904 B = 8345.177320 C = 9041.721321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.315 6.315 4 C 0.120 3.880 5 C -0.207 4.207 6 C -0.071 4.071 7 C -0.089 4.089 8 C 0.060 3.940 9 N -0.485 5.485 10 C -0.003 4.003 11 C 0.039 3.961 12 C -0.519 4.519 13 H 0.056 0.944 14 C 0.067 3.933 15 N -0.886 5.886 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.016 3.984 21 C -0.071 4.071 22 C -0.113 4.113 23 C -0.072 4.072 24 C -0.144 4.144 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.262 0.738 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.126 0.874 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.854 -8.844 -9.600 20.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.229 6.229 4 C 0.075 3.925 5 C -0.226 4.226 6 C -0.090 4.090 7 C -0.090 4.090 8 C -0.068 4.068 9 N -0.208 5.208 10 C -0.131 4.131 11 C 0.020 3.980 12 C -0.558 4.558 13 H 0.074 0.926 14 C -0.136 4.136 15 N -0.523 5.523 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.112 4.112 21 C -0.089 4.089 22 C -0.114 4.114 23 C -0.109 4.109 24 C -0.202 4.202 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.144 0.856 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.467 -9.092 -9.118 20.904 hybrid contribution 1.167 1.042 -0.571 1.665 sum -15.300 -8.050 -9.689 19.818 Atomic orbital electron populations 1.21760 0.93016 1.02606 1.03407 1.22713 0.95583 0.82560 1.01224 1.86037 1.19300 1.28540 1.89030 1.18698 0.81896 0.93588 0.98355 1.21113 0.94344 0.97497 1.09664 1.20746 0.93859 0.96847 0.97528 1.19725 0.95626 0.92744 1.00913 1.21535 0.90985 1.00710 0.93557 1.68615 1.11910 1.24751 1.15534 1.24076 0.88103 1.00481 1.00487 1.20293 0.91817 0.91650 0.94209 1.21057 1.14894 1.05193 1.14608 0.92553 1.25007 0.95569 0.98174 0.94866 1.69955 1.34544 1.30686 1.17138 0.86699 0.82080 0.81686 0.77764 1.20281 1.21251 1.20184 1.24143 1.01524 0.86991 0.98580 1.20821 0.91372 0.98991 0.97737 1.19173 0.93935 0.92193 1.06055 1.20318 0.98021 0.94721 0.97881 1.21710 1.01405 1.00983 0.96074 0.90609 0.91561 0.91669 0.92356 0.92206 0.86017 0.86102 0.93544 0.91353 0.92741 0.91679 0.92417 0.92833 0.91550 0.92845 0.85643 0.91397 0.91171 0.92677 0.92363 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.67 16 2 C 0.05 0.50 5.46 37.16 0.20 0.70 16 3 O -0.31 -3.99 9.27 -19.44 -0.18 -4.17 16 4 C 0.12 1.70 6.66 -39.22 -0.26 1.43 16 5 C -0.21 -2.80 9.04 -39.43 -0.36 -3.16 16 6 C -0.07 -1.05 9.69 -39.61 -0.38 -1.43 16 7 C -0.09 -1.45 5.44 -104.60 -0.57 -2.02 16 8 C 0.06 1.05 4.92 -4.97 -0.02 1.02 16 9 N -0.49 -9.96 6.15 -239.48 -1.47 -11.43 16 10 C 0.00 -0.06 7.50 -2.76 -0.02 -0.08 16 11 C 0.04 0.99 3.60 -90.84 -0.33 0.67 16 12 C -0.52 -14.15 8.77 -34.44 -0.30 -14.45 16 13 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 14 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 15 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 16 Si 0.89 21.10 29.54 -169.99 -5.02 16.07 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.02 0.38 7.53 -2.57 -0.02 0.36 16 21 C -0.07 -1.12 9.33 -39.61 -0.37 -1.49 16 22 C -0.11 -1.66 5.15 -104.48 -0.54 -2.20 16 23 C -0.07 -0.92 5.79 -27.88 -0.16 -1.08 16 24 C -0.14 -1.81 9.90 37.16 0.37 -1.44 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 29 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 30 H 0.12 1.33 6.30 -52.48 -0.33 1.00 16 31 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.05 0.81 7.33 -51.93 -0.38 0.43 16 33 H 0.07 1.07 8.02 -51.93 -0.42 0.66 16 34 H 0.05 1.11 7.88 -51.92 -0.41 0.71 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 39 H 0.05 1.24 7.43 -51.93 -0.39 0.86 16 40 H 0.13 1.97 8.06 -52.48 -0.42 1.54 16 41 H 0.07 0.81 8.05 -51.92 -0.42 0.39 16 42 H 0.07 0.85 7.69 -51.93 -0.40 0.45 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 367.62 15.07 5.54 5.54 Total: -1.00 -29.35 367.62 -10.61 -39.95 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.73 Total: 1.02 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -2.48 Total: -22.11 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.74 Total: -36.31 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.18 Total: -4.17 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.35 -10.61 -39.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139618814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.013 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds