Wall clock time and date at job start Tue Mar 31 2020 06:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.46757 * 2 1 4 4 C 1.35905 * 116.99747 * 179.97438 * 3 2 1 5 5 C 1.38756 * 120.05631 * 359.97438 * 4 3 2 6 6 C 1.38124 * 119.94347 * 179.74406 * 5 4 3 7 7 C 1.38285 * 120.05389 * 0.55465 * 6 5 4 8 8 C 1.50702 * 119.94571 * 179.72038 * 7 6 5 9 9 N 1.46902 * 109.47215 * 269.72917 * 8 7 6 10 10 C 1.47961 * 111.00005 * 169.99576 * 9 8 7 11 11 C 1.53934 * 86.17939 * 137.58072 * 10 9 8 12 12 C 1.50703 * 113.73399 * 221.81705 * 11 10 9 13 13 H 1.07999 * 119.99920 * 358.09577 * 12 11 10 14 14 C 1.37877 * 119.99669 * 178.10223 * 12 11 10 15 15 N 1.31510 * 120.00506 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99624 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47014 * 59.99839 * 16 14 12 18 18 H 1.48503 * 109.47043 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47160 * 300.00101 * 16 14 12 20 20 C 1.48296 * 111.00409 * 269.34877 * 9 8 7 21 21 C 1.38246 * 120.11156 * 359.45038 * 7 6 5 22 22 C 1.38163 * 120.05671 * 0.27153 * 21 7 6 23 23 C 1.50697 * 120.02811 * 179.97438 * 22 21 7 24 24 C 1.53011 * 109.47052 * 265.00030 * 23 22 21 25 25 H 1.09007 * 109.46905 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47058 * 299.99424 * 1 2 3 27 27 H 1.08996 * 109.46978 * 59.99848 * 1 2 3 28 28 H 1.08998 * 109.47058 * 240.00576 * 2 1 3 29 29 H 1.09000 * 109.47298 * 120.00538 * 2 1 3 30 30 H 1.08003 * 120.02635 * 0.02562 * 5 4 3 31 31 H 1.07994 * 119.96972 * 180.27252 * 6 5 4 32 32 H 1.09001 * 109.47251 * 149.72492 * 8 7 6 33 33 H 1.09004 * 109.46551 * 29.72859 * 8 7 6 34 34 H 1.09007 * 113.75652 * 23.26342 * 10 9 8 35 35 H 1.08993 * 113.76177 * 251.90248 * 10 9 8 36 36 H 1.09002 * 113.73279 * 90.64057 * 11 10 9 37 37 H 0.96995 * 120.00309 * 180.02562 * 15 14 12 38 38 H 1.09001 * 113.86054 * 108.14174 * 20 9 8 39 39 H 1.09000 * 113.76062 * 336.68481 * 20 9 8 40 40 H 1.08005 * 119.97019 * 180.25625 * 21 7 6 41 41 H 1.09007 * 109.47647 * 24.99628 * 23 22 21 42 42 H 1.09002 * 109.47197 * 145.00305 * 23 22 21 43 43 H 1.09000 * 109.46237 * 300.00051 * 24 23 22 44 44 H 1.08993 * 109.46929 * 59.99817 * 24 23 22 45 45 H 1.08995 * 109.46683 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4258 0.0016 6 6 5.5689 0.6095 -0.0032 7 6 6.0961 1.8879 0.0025 8 6 7.5902 2.0855 0.0037 9 7 8.0745 2.1500 1.3890 10 6 9.5527 2.1035 1.4366 11 6 9.4504 3.2075 2.5044 12 6 10.4763 4.3002 2.3474 13 1 11.2112 4.2415 1.5582 14 6 10.4768 5.3746 3.2114 15 7 9.5823 5.4458 4.1729 16 14 11.7490 6.7287 3.0172 17 1 11.6116 7.3480 1.6745 18 1 11.5358 7.7618 4.0625 19 1 13.1104 6.1529 3.1598 20 6 8.0830 3.5477 1.8845 21 6 5.2550 2.9851 0.0016 22 6 3.8850 2.8067 0.0006 23 6 2.9687 4.0031 0.0002 24 6 2.5578 4.3313 1.4371 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.7886 -0.5728 0.0016 31 1 6.2280 -0.2460 -0.0068 32 1 7.8341 3.0152 -0.5103 33 1 8.0673 1.2506 -0.5096 34 1 10.0322 2.4286 0.5133 35 1 9.9504 1.1619 1.8151 36 1 9.3874 2.8272 3.5240 37 1 9.5824 6.2019 4.7805 38 1 7.3075 3.7593 2.6207 39 1 8.1337 4.2944 1.0920 40 1 5.6693 3.9825 0.0019 41 1 3.4875 4.8580 -0.4336 42 1 2.0798 3.7798 -0.5899 43 1 2.0390 3.4764 1.8707 44 1 3.4466 4.5545 2.0271 45 1 1.8947 5.1964 1.4367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139618814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:41 Heat of formation + Delta-G solvation = -14.066966 kcal Electronic energy + Delta-G solvation = -22792.406757 eV Core-core repulsion = 19581.785380 eV Total energy + Delta-G solvation = -3210.621377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.35994 -40.37034 -38.53707 -35.39990 -34.65285 -32.95637 -32.08541 -30.58883 -29.37081 -27.08977 -26.67205 -25.10903 -24.67626 -23.85089 -22.15399 -21.15810 -20.40253 -19.00516 -18.60604 -17.24845 -17.02042 -16.74178 -16.54961 -15.98771 -15.71435 -15.47996 -15.03704 -14.77489 -14.59842 -14.31071 -14.23082 -13.84692 -13.43692 -13.40816 -13.36022 -13.17648 -12.96193 -12.84428 -12.60558 -12.52164 -12.43883 -12.33966 -12.05591 -11.81949 -11.58226 -11.50629 -11.43469 -11.11017 -10.91425 -10.51300 -9.76520 -9.57090 -8.92892 -8.14037 -6.26024 0.40651 0.47245 1.42671 1.43930 1.51850 2.30108 2.42445 2.72968 3.15282 3.40063 3.76668 3.84856 3.89985 4.08339 4.09637 4.25581 4.26966 4.30538 4.37248 4.40309 4.49425 4.51355 4.51850 4.60932 4.69644 4.76212 4.79245 4.87893 4.93398 4.96631 4.99632 5.01429 5.03788 5.16521 5.23432 5.24696 5.33970 5.41015 5.50920 5.53074 5.63506 5.79471 5.85855 5.87949 6.30278 6.39338 6.51505 6.82869 7.42429 8.95108 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024421 B = 0.003354 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.298904 B = 8345.177320 C = 9041.721321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.324 6.324 4 C 0.118 3.882 5 C -0.206 4.206 6 C -0.075 4.075 7 C -0.111 4.111 8 C 0.064 3.936 9 N -0.483 5.483 10 C 0.013 3.987 11 C 0.020 3.980 12 C -0.533 4.533 13 H 0.060 0.940 14 C 0.014 3.986 15 N -0.922 5.922 16 Si 0.957 3.043 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.031 3.969 21 C -0.085 4.085 22 C -0.126 4.126 23 C -0.070 4.070 24 C -0.140 4.140 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.150 0.850 31 H 0.137 0.863 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.022 0.978 37 H 0.262 0.738 38 H 0.043 0.957 39 H 0.049 0.951 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.049 0.951 44 H 0.038 0.962 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.463 -9.899 -11.004 22.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.239 6.239 4 C 0.073 3.927 5 C -0.224 4.224 6 C -0.093 4.093 7 C -0.111 4.111 8 C -0.064 4.064 9 N -0.206 5.206 10 C -0.116 4.116 11 C 0.001 3.999 12 C -0.571 4.571 13 H 0.078 0.922 14 C -0.185 4.185 15 N -0.560 5.560 16 Si 0.782 3.218 17 H -0.194 1.194 18 H -0.211 1.211 19 H -0.193 1.193 20 C -0.098 4.098 21 C -0.104 4.104 22 C -0.126 4.126 23 C -0.107 4.107 24 C -0.197 4.197 25 H 0.118 0.882 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.167 0.833 31 H 0.155 0.845 32 H 0.060 0.940 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.134 0.866 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.079 -10.165 -10.538 22.496 hybrid contribution 1.246 1.281 -0.141 1.792 sum -15.833 -8.885 -10.679 21.063 Atomic orbital electron populations 1.21786 0.91387 1.04092 1.03127 1.23047 0.96922 0.81064 1.02058 1.86042 1.18289 1.30876 1.88659 1.18841 0.82859 0.93551 0.97493 1.21402 0.93832 0.98680 1.08483 1.20957 0.94751 0.96593 0.97015 1.19707 0.94880 0.93690 1.02856 1.21533 0.92099 1.01359 0.91387 1.68540 1.11589 1.22344 1.18118 1.23944 0.88718 0.99618 0.99283 1.20279 0.92791 0.93108 0.93695 1.21412 1.15284 1.05820 1.14617 0.92196 1.25831 0.97526 1.00608 0.94561 1.70091 1.36363 1.31493 1.18094 0.85637 0.79633 0.78656 0.77895 1.19427 1.21121 1.19334 1.23813 0.99526 0.88658 0.97851 1.20845 0.92170 0.98678 0.98679 1.19387 0.93784 0.93432 1.06044 1.20337 0.98039 0.94319 0.98037 1.21665 1.00833 1.01577 0.95642 0.88232 0.92086 0.91706 0.91080 0.91700 0.83263 0.84517 0.93993 0.89203 0.91693 0.90117 0.95935 0.92900 0.93888 0.93316 0.86586 0.90920 0.90314 0.93162 0.94256 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.04 0.70 5.46 71.98 0.39 1.09 16 3 O -0.32 -7.67 9.27 -92.48 -0.86 -8.53 16 4 C 0.12 3.19 6.66 22.51 0.15 3.34 16 5 C -0.21 -5.12 9.04 22.37 0.20 -4.92 16 6 C -0.07 -2.07 9.69 22.25 0.22 -1.85 16 7 C -0.11 -3.53 5.44 -19.85 -0.11 -3.64 16 8 C 0.06 2.17 4.92 85.56 0.42 2.59 16 9 N -0.48 -19.75 6.15 -911.59 -5.61 -25.36 16 10 C 0.01 0.53 7.50 86.41 0.65 1.18 16 11 C 0.02 1.05 3.60 -10.89 -0.04 1.01 16 12 C -0.53 -29.37 8.77 25.60 0.22 -29.14 16 13 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 14 C 0.01 0.79 5.46 84.66 0.46 1.25 16 15 N -0.92 -54.70 13.29 21.45 0.28 -54.41 16 16 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 18 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 20 C 0.03 1.47 7.53 86.34 0.65 2.12 16 21 C -0.09 -2.73 9.33 22.25 0.21 -2.52 16 22 C -0.13 -3.67 5.15 -19.77 -0.10 -3.77 16 23 C -0.07 -1.76 5.79 29.85 0.17 -1.59 16 24 C -0.14 -3.48 9.90 71.99 0.71 -2.77 16 25 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 29 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 30 H 0.15 2.80 6.30 -2.91 -0.02 2.78 16 31 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.04 1.45 7.33 -2.39 -0.02 1.43 16 33 H 0.09 2.64 8.02 -2.39 -0.02 2.62 16 34 H 0.06 2.56 7.88 -2.38 -0.02 2.55 16 35 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 38 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.05 2.34 7.43 -2.39 -0.02 2.32 16 40 H 0.12 3.81 8.06 -2.91 -0.02 3.78 16 41 H 0.07 1.72 8.05 -2.38 -0.02 1.70 16 42 H 0.08 1.83 7.69 -2.39 -0.02 1.81 16 43 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -63.55 367.62 1.74 -61.81 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.94 Total: 19.61 kcal Atomic # 6 Polarization: -43.55 SS G_CDS: 4.95 Total: -38.60 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -5.32 Total: -79.77 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.86 Total: -8.53 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -63.55 1.74 -61.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139618814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.742 kcal (2) G-P(sol) polarization free energy of solvation -63.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds