Wall clock time and date at job start Tue Mar 31 2020 05:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38176 * 120.02921 * 2 1 4 4 C 1.38249 * 120.05194 * 180.25211 * 3 2 1 5 5 C 1.50701 * 119.93782 * 179.72896 * 4 3 2 6 6 N 1.46898 * 109.47029 * 263.12749 * 5 4 3 7 7 C 1.46894 * 111.00286 * 192.27443 * 6 5 4 8 8 C 1.50697 * 109.47639 * 178.14393 * 7 6 5 9 9 H 1.08002 * 119.99539 * 5.09952 * 8 7 6 10 10 C 1.37874 * 120.00541 * 185.10175 * 8 7 6 11 11 N 1.31514 * 119.99884 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00361 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46855 * 59.99830 * 12 10 8 14 14 H 1.48499 * 109.47317 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47416 * 300.00175 * 12 10 8 16 16 C 1.46907 * 110.99851 * 68.32353 * 6 5 4 17 17 C 1.54265 * 110.03132 * 218.64859 * 16 6 5 18 18 C 1.54958 * 104.15960 * 217.13537 * 17 16 6 19 19 C 1.54885 * 102.77624 * 37.89012 * 18 17 16 20 20 C 1.53877 * 110.03297 * 101.43149 * 16 6 5 21 21 C 1.38276 * 120.11243 * 359.45022 * 4 3 2 22 22 C 1.38122 * 120.05837 * 0.25628 * 21 4 3 23 23 C 1.38717 * 120.02930 * 179.68337 * 2 1 3 24 24 O 1.35898 * 120.05323 * 0.02562 * 23 2 1 25 25 H 1.09004 * 109.47119 * 270.31894 * 1 2 3 26 26 H 1.09000 * 109.46934 * 30.31602 * 1 2 3 27 27 H 1.09001 * 109.47467 * 150.31860 * 1 2 3 28 28 H 1.07994 * 119.97171 * 0.02562 * 3 2 1 29 29 H 1.09003 * 109.47085 * 143.12937 * 5 4 3 30 30 H 1.09001 * 109.47386 * 23.13282 * 5 4 3 31 31 H 1.09000 * 109.47350 * 298.15084 * 7 6 5 32 32 H 1.09001 * 109.46829 * 58.14200 * 7 6 5 33 33 H 0.97001 * 120.00453 * 180.02562 * 11 10 8 34 34 H 1.09005 * 110.01548 * 340.04434 * 16 6 5 35 35 H 1.09000 * 110.49039 * 335.78869 * 17 16 6 36 36 H 1.09009 * 110.48368 * 98.42972 * 17 16 6 37 37 H 1.09005 * 110.72153 * 279.57895 * 18 17 16 38 38 H 1.08998 * 110.92238 * 156.29837 * 18 17 16 39 39 H 1.09010 * 110.48270 * 203.40156 * 19 18 17 40 40 H 1.08996 * 110.60272 * 80.82087 * 19 18 17 41 41 H 1.08990 * 110.03078 * 238.57149 * 20 16 6 42 42 H 1.09007 * 110.03034 * 359.95173 * 20 16 6 43 43 H 1.08006 * 119.97010 * 180.27209 * 21 4 3 44 44 H 1.08005 * 120.02632 * 180.02562 * 22 21 4 45 45 H 0.96704 * 113.99503 * 270.01794 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5809 1.1968 -0.0053 5 6 4.3325 2.5031 -0.0114 6 7 4.7151 2.8413 -1.3888 7 6 5.6886 3.9411 -1.4098 8 6 6.0909 4.2290 -2.8332 9 1 5.6059 3.7100 -3.6468 10 6 7.0780 5.1547 -3.0970 11 7 7.6682 5.7869 -2.1063 12 14 7.5771 5.5109 -4.8614 13 1 6.4016 6.0149 -5.6162 14 1 8.6513 6.5362 -4.8747 15 1 8.0755 4.2643 -5.4963 16 6 3.5335 3.1687 -2.1980 17 6 3.6941 2.5986 -3.6224 18 6 3.0579 3.6764 -4.5361 19 6 3.4888 4.9996 -3.8561 20 6 3.4026 4.6947 -2.3464 21 6 4.2752 0.0010 0.0009 22 6 3.5886 -1.1975 0.0071 23 6 2.2012 -1.2009 0.0066 24 8 1.5234 -2.3788 0.0126 25 1 -0.3633 0.0057 1.0277 26 1 -0.3633 0.8871 -0.5187 27 1 -0.3634 -0.8928 -0.5089 28 1 1.6585 2.1315 0.0004 29 1 5.2286 2.4095 0.6020 30 1 3.6961 3.2903 0.3927 31 1 5.2394 4.8325 -0.9718 32 1 6.5694 3.6577 -0.8335 33 1 8.3625 6.4385 -2.2918 34 1 2.6369 2.7607 -1.7313 35 1 4.7488 2.4678 -3.8644 36 1 3.1598 1.6532 -3.7174 37 1 1.9719 3.5824 -4.5450 38 1 3.4578 3.6141 -5.5482 39 1 2.8047 5.8056 -4.1222 40 1 4.5098 5.2595 -4.1352 41 1 2.4422 5.0271 -1.9525 42 1 4.2153 5.1924 -1.8172 43 1 5.3552 0.0041 0.0012 44 1 4.1314 -2.1312 0.0123 45 1 1.3266 -2.7148 0.8978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140575661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:11 Heat of formation + Delta-G solvation = -5.053733 kcal Electronic energy + Delta-G solvation = -23992.244659 eV Core-core repulsion = 20782.014125 eV Total energy + Delta-G solvation = -3210.230534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.93922 -38.69042 -36.73222 -34.26256 -32.78106 -32.41379 -30.37482 -28.02155 -27.24681 -27.05979 -26.29694 -23.89481 -22.24975 -21.83976 -20.46114 -19.86930 -18.22535 -18.04235 -16.67704 -15.93196 -15.56319 -15.26977 -14.98272 -14.76163 -14.31702 -13.85208 -13.68451 -13.21305 -13.04825 -13.02260 -12.67213 -12.49794 -12.21418 -11.89611 -11.72901 -11.62363 -11.18334 -11.00620 -10.85373 -10.74148 -10.60343 -10.42174 -10.33562 -10.23412 -10.08958 -9.94456 -9.47035 -9.20574 -8.75561 -8.61322 -8.36727 -8.21460 -7.13349 -6.01231 -3.98046 1.39498 1.50894 3.32480 3.37740 3.40333 3.74517 4.28149 4.43966 4.87336 4.94750 5.07076 5.15815 5.33911 5.40409 5.50291 5.50612 5.55389 5.64125 5.69792 5.81476 5.82766 5.92531 6.02021 6.13518 6.21258 6.27222 6.33026 6.39834 6.45860 6.49965 6.58998 6.61673 6.69125 6.75726 6.85624 6.90420 6.99168 7.00475 7.06500 7.36028 7.41648 7.60664 7.68345 7.93736 8.11194 8.26083 8.58251 9.08179 9.62770 11.10345 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023046 B = 0.004553 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.654422 B = 6148.104721 C = 6586.779550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.114 4.114 3 C -0.102 4.102 4 C -0.061 4.061 5 C 0.087 3.913 6 N -0.525 5.525 7 C 0.187 3.813 8 C -0.505 4.505 9 H 0.083 0.917 10 C 0.056 3.944 11 N -0.900 5.900 12 Si 0.884 3.116 13 H -0.275 1.275 14 H -0.289 1.289 15 H -0.277 1.277 16 C 0.094 3.906 17 C -0.110 4.110 18 C -0.124 4.124 19 C -0.116 4.116 20 C -0.158 4.158 21 C -0.086 4.086 22 C -0.142 4.142 23 C 0.088 3.912 24 O -0.499 6.499 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.032 0.968 31 H 0.000 1.000 32 H 0.031 0.969 33 H 0.260 0.740 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.042 0.958 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.037 0.963 40 H 0.092 0.908 41 H 0.030 0.970 42 H 0.110 0.890 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.784 -9.815 5.267 16.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.114 4.114 3 C -0.121 4.121 4 C -0.062 4.062 5 C -0.041 4.041 6 N -0.249 5.249 7 C 0.063 3.937 8 C -0.543 4.543 9 H 0.101 0.899 10 C -0.144 4.144 11 N -0.540 5.540 12 Si 0.712 3.288 13 H -0.200 1.200 14 H -0.215 1.215 15 H -0.202 1.202 16 C -0.015 4.015 17 C -0.148 4.148 18 C -0.162 4.162 19 C -0.154 4.154 20 C -0.196 4.196 21 C -0.105 4.105 22 C -0.161 4.161 23 C 0.044 3.956 24 O -0.308 6.308 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.139 0.861 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.017 0.983 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.110 0.890 41 H 0.049 0.951 42 H 0.128 0.872 43 H 0.146 0.854 44 H 0.141 0.859 45 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -11.370 -10.022 4.493 15.808 hybrid contribution -0.061 0.911 -0.109 0.920 sum -11.431 -9.110 4.383 15.261 Atomic orbital electron populations 1.20648 0.91158 1.02963 1.01822 1.20100 0.96309 0.92573 1.02463 1.20867 0.93739 0.96881 1.00625 1.19998 0.93118 0.95763 0.97314 1.21049 0.98105 0.91823 0.93086 1.62457 1.12209 1.43150 1.07041 1.19936 0.89295 0.86366 0.98112 1.21538 1.18854 1.21316 0.92598 0.89922 1.24924 0.96342 0.96501 0.96671 1.69939 1.26139 1.27104 1.30802 0.86780 0.78337 0.78077 0.85565 1.20021 1.21516 1.20220 1.22093 0.91594 0.93592 0.94182 1.22572 1.02321 0.95887 0.94009 1.22459 0.98635 0.96739 0.98371 1.22417 1.02469 0.95303 0.95171 1.22950 1.01030 0.97594 0.98056 1.20918 1.00259 0.91026 0.98286 1.21348 0.93291 0.98741 1.02711 1.18228 0.89801 0.84508 1.03108 1.84811 1.76669 1.36381 1.32905 0.91736 0.91644 0.91173 0.86150 0.90453 0.95024 0.98287 0.95062 0.93035 0.92756 0.88896 0.93883 0.93279 0.92758 0.94376 0.89007 0.95126 0.87179 0.85414 0.85859 0.76334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.79 36.00 0.35 -0.79 16 2 C -0.11 -1.50 5.89 -104.47 -0.62 -2.11 16 3 C -0.10 -1.46 7.88 -39.60 -0.31 -1.78 16 4 C -0.06 -0.95 4.94 -104.60 -0.52 -1.47 16 5 C 0.09 1.52 5.03 -4.98 -0.03 1.50 16 6 N -0.52 -10.74 4.41 -228.17 -1.01 -11.74 16 7 C 0.19 4.53 4.20 -4.98 -0.02 4.51 16 8 C -0.50 -12.95 5.49 -34.44 -0.19 -13.14 16 9 H 0.08 2.08 3.18 -52.49 -0.17 1.91 16 10 C 0.06 1.52 5.42 -17.82 -0.10 1.42 16 11 N -0.90 -25.63 13.29 55.43 0.74 -24.90 16 12 Si 0.88 20.95 28.97 -169.99 -4.92 16.03 16 13 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 C 0.09 1.81 2.72 -66.59 -0.18 1.63 16 17 C -0.11 -2.11 5.86 -25.04 -0.15 -2.26 16 18 C -0.12 -2.21 6.85 -24.70 -0.17 -2.37 16 19 C -0.12 -2.28 6.12 -25.08 -0.15 -2.43 16 20 C -0.16 -3.16 5.62 -25.61 -0.14 -3.30 16 21 C -0.09 -1.27 9.72 -39.61 -0.38 -1.66 16 22 C -0.14 -1.91 9.99 -39.44 -0.39 -2.30 16 23 C 0.09 1.16 6.68 -39.22 -0.26 0.89 16 24 O -0.50 -5.60 12.55 -19.42 -0.24 -5.84 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.07 0.73 7.53 -51.93 -0.39 0.34 16 28 H 0.12 1.62 7.59 -52.49 -0.40 1.23 16 29 H 0.08 1.33 7.98 -51.93 -0.41 0.92 16 30 H 0.03 0.54 7.99 -51.93 -0.41 0.12 16 31 H 0.00 0.00 5.82 -51.93 -0.30 -0.30 16 32 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.05 0.98 5.32 -51.93 -0.28 0.70 16 35 H 0.09 2.01 5.67 -51.93 -0.29 1.71 16 36 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 40 H 0.09 2.06 5.33 -51.93 -0.28 1.78 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.11 2.53 3.94 -51.93 -0.20 2.33 16 43 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 44 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 45 H 0.38 2.42 9.06 45.56 0.41 2.83 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -28.75 341.61 -9.63 -38.39 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.08 Total: 6.58 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -3.26 Total: -23.66 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.27 Total: -36.64 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.24 Total: -5.84 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.92 Total: 16.03 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.75 -9.63 -38.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140575661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.332 kcal (2) G-P(sol) polarization free energy of solvation -28.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds