Wall clock time and date at job start Tue Mar 31 2020 05:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38176 * 120.02921 * 2 1 4 4 C 1.38249 * 120.05194 * 180.25211 * 3 2 1 5 5 C 1.50701 * 119.93782 * 179.72896 * 4 3 2 6 6 N 1.46898 * 109.47029 * 263.12749 * 5 4 3 7 7 C 1.46894 * 111.00286 * 192.27443 * 6 5 4 8 8 C 1.50697 * 109.47639 * 178.14393 * 7 6 5 9 9 H 1.08002 * 119.99539 * 5.09952 * 8 7 6 10 10 C 1.37874 * 120.00541 * 185.10175 * 8 7 6 11 11 N 1.31514 * 119.99884 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00361 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46855 * 59.99830 * 12 10 8 14 14 H 1.48499 * 109.47317 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47416 * 300.00175 * 12 10 8 16 16 C 1.46907 * 110.99851 * 68.32353 * 6 5 4 17 17 C 1.54265 * 110.03132 * 218.64859 * 16 6 5 18 18 C 1.54958 * 104.15960 * 217.13537 * 17 16 6 19 19 C 1.54885 * 102.77624 * 37.89012 * 18 17 16 20 20 C 1.53877 * 110.03297 * 101.43149 * 16 6 5 21 21 C 1.38276 * 120.11243 * 359.45022 * 4 3 2 22 22 C 1.38122 * 120.05837 * 0.25628 * 21 4 3 23 23 C 1.38717 * 120.02930 * 179.68337 * 2 1 3 24 24 O 1.35898 * 120.05323 * 0.02562 * 23 2 1 25 25 H 1.09004 * 109.47119 * 270.31894 * 1 2 3 26 26 H 1.09000 * 109.46934 * 30.31602 * 1 2 3 27 27 H 1.09001 * 109.47467 * 150.31860 * 1 2 3 28 28 H 1.07994 * 119.97171 * 0.02562 * 3 2 1 29 29 H 1.09003 * 109.47085 * 143.12937 * 5 4 3 30 30 H 1.09001 * 109.47386 * 23.13282 * 5 4 3 31 31 H 1.09000 * 109.47350 * 298.15084 * 7 6 5 32 32 H 1.09001 * 109.46829 * 58.14200 * 7 6 5 33 33 H 0.97001 * 120.00453 * 180.02562 * 11 10 8 34 34 H 1.09005 * 110.01548 * 340.04434 * 16 6 5 35 35 H 1.09000 * 110.49039 * 335.78869 * 17 16 6 36 36 H 1.09009 * 110.48368 * 98.42972 * 17 16 6 37 37 H 1.09005 * 110.72153 * 279.57895 * 18 17 16 38 38 H 1.08998 * 110.92238 * 156.29837 * 18 17 16 39 39 H 1.09010 * 110.48270 * 203.40156 * 19 18 17 40 40 H 1.08996 * 110.60272 * 80.82087 * 19 18 17 41 41 H 1.08990 * 110.03078 * 238.57149 * 20 16 6 42 42 H 1.09007 * 110.03034 * 359.95173 * 20 16 6 43 43 H 1.08006 * 119.97010 * 180.27209 * 21 4 3 44 44 H 1.08005 * 120.02632 * 180.02562 * 22 21 4 45 45 H 0.96704 * 113.99503 * 270.01794 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5809 1.1968 -0.0053 5 6 4.3325 2.5031 -0.0114 6 7 4.7151 2.8413 -1.3888 7 6 5.6886 3.9411 -1.4098 8 6 6.0909 4.2290 -2.8332 9 1 5.6059 3.7100 -3.6468 10 6 7.0780 5.1547 -3.0970 11 7 7.6682 5.7869 -2.1063 12 14 7.5771 5.5109 -4.8614 13 1 6.4016 6.0149 -5.6162 14 1 8.6513 6.5362 -4.8747 15 1 8.0755 4.2643 -5.4963 16 6 3.5335 3.1687 -2.1980 17 6 3.6941 2.5986 -3.6224 18 6 3.0579 3.6764 -4.5361 19 6 3.4888 4.9996 -3.8561 20 6 3.4026 4.6947 -2.3464 21 6 4.2752 0.0010 0.0009 22 6 3.5886 -1.1975 0.0071 23 6 2.2012 -1.2009 0.0066 24 8 1.5234 -2.3788 0.0126 25 1 -0.3633 0.0057 1.0277 26 1 -0.3633 0.8871 -0.5187 27 1 -0.3634 -0.8928 -0.5089 28 1 1.6585 2.1315 0.0004 29 1 5.2286 2.4095 0.6020 30 1 3.6961 3.2903 0.3927 31 1 5.2394 4.8325 -0.9718 32 1 6.5694 3.6577 -0.8335 33 1 8.3625 6.4385 -2.2918 34 1 2.6369 2.7607 -1.7313 35 1 4.7488 2.4678 -3.8644 36 1 3.1598 1.6532 -3.7174 37 1 1.9719 3.5824 -4.5450 38 1 3.4578 3.6141 -5.5482 39 1 2.8047 5.8056 -4.1222 40 1 4.5098 5.2595 -4.1352 41 1 2.4422 5.0271 -1.9525 42 1 4.2153 5.1924 -1.8172 43 1 5.3552 0.0041 0.0012 44 1 4.1314 -2.1312 0.0123 45 1 1.3266 -2.7148 0.8978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140575661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:10 Heat of formation + Delta-G solvation = -22.320084 kcal Electronic energy + Delta-G solvation = -23992.993384 eV Core-core repulsion = 20782.014125 eV Total energy + Delta-G solvation = -3210.979259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.09243 -40.13982 -37.77795 -35.74644 -34.62415 -33.54611 -31.69901 -29.63317 -28.85208 -28.44602 -27.45617 -25.48425 -23.79014 -23.13141 -21.62203 -21.38570 -19.64070 -19.17827 -18.55111 -17.14820 -16.94474 -16.62027 -16.50777 -16.18610 -15.89807 -15.29208 -14.83458 -14.60562 -14.38683 -14.08158 -14.02898 -13.88583 -13.60007 -13.21854 -13.00226 -12.89276 -12.76764 -12.66863 -12.48732 -12.25918 -12.17274 -12.06494 -11.71486 -11.65488 -11.56901 -11.27899 -11.23540 -10.89194 -10.61392 -10.37892 -9.68106 -9.30262 -8.81196 -8.09009 -6.09989 0.32624 0.45039 1.42808 1.43927 1.50188 2.45267 2.68019 3.25508 3.36223 3.47107 3.87966 3.91803 3.99541 4.01992 4.04682 4.29770 4.39460 4.42814 4.63544 4.65959 4.71309 4.79444 4.80697 4.83451 4.86097 4.94278 4.97900 5.02157 5.09013 5.14703 5.21271 5.23832 5.30493 5.32573 5.37205 5.43968 5.55374 5.58815 5.74257 5.77491 5.86859 5.93952 5.97896 6.20874 6.49649 6.77801 6.92465 7.04625 7.54632 9.03199 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023046 B = 0.004553 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.654422 B = 6148.104721 C = 6586.779550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.117 4.117 3 C -0.106 4.106 4 C -0.077 4.077 5 C 0.091 3.909 6 N -0.531 5.531 7 C 0.203 3.797 8 C -0.497 4.497 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.939 5.939 12 Si 0.939 3.061 13 H -0.262 1.262 14 H -0.292 1.292 15 H -0.273 1.273 16 C 0.096 3.904 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.156 4.156 21 C -0.099 4.099 22 C -0.146 4.146 23 C 0.093 3.907 24 O -0.503 6.503 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.127 0.873 29 H 0.068 0.932 30 H 0.034 0.966 31 H -0.018 1.018 32 H -0.003 1.003 33 H 0.257 0.743 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.122 0.878 44 H 0.140 0.860 45 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.489 -11.370 4.385 18.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.117 4.117 3 C -0.125 4.125 4 C -0.078 4.078 5 C -0.037 4.037 6 N -0.254 5.254 7 C 0.077 3.923 8 C -0.535 4.535 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.581 5.581 12 Si 0.766 3.234 13 H -0.187 1.187 14 H -0.218 1.218 15 H -0.199 1.199 16 C -0.013 4.013 17 C -0.147 4.147 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.194 4.194 21 C -0.117 4.117 22 C -0.164 4.164 23 C 0.049 3.951 24 O -0.315 6.315 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.145 0.855 29 H 0.086 0.914 30 H 0.052 0.948 31 H -0.001 1.001 32 H 0.015 0.985 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.140 0.860 44 H 0.158 0.842 45 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -14.100 -11.604 3.620 18.616 hybrid contribution 0.692 1.281 0.254 1.478 sum -13.408 -10.324 3.873 17.359 Atomic orbital electron populations 1.20685 0.89062 1.03328 1.03182 1.20386 0.97837 0.92021 1.01472 1.20939 0.93062 0.97840 1.00639 1.19795 0.93750 0.94635 0.99624 1.21010 0.98146 0.93295 0.91238 1.62353 1.12676 1.41184 1.09219 1.19597 0.89032 0.86783 0.96841 1.21850 1.17995 1.20295 0.93397 0.89177 1.25642 0.96740 0.96695 1.00010 1.70076 1.27090 1.28183 1.32746 0.85887 0.78153 0.77788 0.81594 1.18718 1.21830 1.19877 1.22162 0.91530 0.93277 0.94304 1.22508 1.00820 0.97191 0.94162 1.22431 1.00187 0.94551 0.98079 1.22361 1.01133 0.97163 0.94981 1.22855 1.00663 0.97734 0.98188 1.20947 1.00189 0.91546 0.99041 1.21517 0.93819 0.98760 1.02299 1.18313 0.89739 0.85254 1.01815 1.84749 1.76230 1.35471 1.35063 0.89826 0.91171 0.90881 0.85468 0.91369 0.94821 1.00108 0.98520 0.93370 0.90924 0.91830 0.92426 0.90531 0.91992 0.92465 0.92238 0.93060 0.90784 0.86027 0.84236 0.73547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 9.79 71.23 0.70 -1.15 16 2 C -0.12 -2.74 5.89 -19.77 -0.12 -2.86 16 3 C -0.11 -2.83 7.88 22.26 0.18 -2.66 16 4 C -0.08 -2.37 4.94 -19.85 -0.10 -2.46 16 5 C 0.09 3.24 5.03 85.56 0.43 3.67 16 6 N -0.53 -22.17 4.41 -875.81 -3.86 -26.03 16 7 C 0.20 10.30 4.20 85.56 0.36 10.66 16 8 C -0.50 -26.23 5.49 25.60 0.14 -26.09 16 9 H 0.09 4.58 3.18 -2.91 -0.01 4.58 16 10 C 0.01 0.33 5.42 84.65 0.46 0.79 16 11 N -0.94 -55.60 13.29 21.45 0.28 -55.31 16 12 Si 0.94 43.65 28.97 68.60 1.99 45.64 16 13 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 14 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 15 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 16 C 0.10 3.59 2.72 45.64 0.12 3.72 16 17 C -0.11 -3.99 5.86 31.69 0.19 -3.81 16 18 C -0.11 -3.76 6.85 31.91 0.22 -3.54 16 19 C -0.12 -4.48 6.12 31.67 0.19 -4.29 16 20 C -0.16 -6.13 5.62 31.32 0.18 -5.95 16 21 C -0.10 -2.86 9.72 22.25 0.22 -2.65 16 22 C -0.15 -3.64 9.99 22.36 0.22 -3.42 16 23 C 0.09 2.20 6.68 22.51 0.15 2.35 16 24 O -0.50 -9.56 12.55 -92.40 -1.16 -10.72 16 25 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 27 H 0.07 1.25 7.53 -2.39 -0.02 1.23 16 28 H 0.13 3.15 7.59 -2.91 -0.02 3.13 16 29 H 0.07 2.49 7.98 -2.39 -0.02 2.47 16 30 H 0.03 1.17 7.99 -2.39 -0.02 1.15 16 31 H -0.02 -0.98 5.82 -2.39 -0.01 -1.00 16 32 H 0.00 -0.19 8.07 -2.39 -0.02 -0.20 16 33 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.07 2.47 5.32 -2.38 -0.01 2.46 16 35 H 0.06 2.72 5.67 -2.39 -0.01 2.70 16 36 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 38 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.06 2.64 5.33 -2.39 -0.01 2.62 16 41 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.07 3.50 3.94 -2.38 -0.01 3.49 16 43 H 0.12 3.57 8.06 -2.91 -0.02 3.55 16 44 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 45 H 0.41 3.62 9.06 -74.05 -0.67 2.95 16 Total: -1.00 -62.97 341.61 1.11 -61.86 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.33 Total: 22.25 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 3.54 Total: -37.69 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -3.58 Total: -81.34 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -1.16 Total: -10.72 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.99 Total: 45.64 kcal Total: -62.97 1.11 -61.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140575661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.540 kcal (2) G-P(sol) polarization free energy of solvation -62.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds