Wall clock time and date at job start Tue Mar 31 2020 05:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38290 * 119.97121 * 2 1 4 4 C 1.38241 * 120.11068 * 180.02562 * 3 2 1 5 5 C 1.38170 * 120.05888 * 359.97438 * 4 3 2 6 6 C 1.50690 * 120.03292 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47223 * 269.42556 * 6 5 4 8 8 C 1.46897 * 111.00074 * 174.73987 * 7 6 5 9 9 C 1.50702 * 109.47099 * 183.61969 * 8 7 6 10 10 H 1.07998 * 119.99756 * 5.83263 * 9 8 7 11 11 C 1.37877 * 120.00069 * 185.82301 * 9 8 7 12 12 N 1.31514 * 119.99814 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99928 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47212 * 60.00102 * 13 11 9 15 15 H 1.48502 * 109.47345 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47219 * 299.99937 * 13 11 9 17 17 C 1.46901 * 110.99679 * 298.69618 * 7 6 5 18 18 C 1.54266 * 110.03215 * 268.74793 * 17 7 6 19 19 C 1.54963 * 104.16093 * 217.14094 * 18 17 7 20 20 C 1.54884 * 102.77712 * 37.88856 * 19 18 17 21 21 C 1.53881 * 110.02894 * 151.53263 * 17 7 6 22 22 C 1.38714 * 119.93916 * 359.97438 * 5 4 3 23 23 O 1.35898 * 120.05606 * 179.72999 * 22 5 4 24 24 C 1.38123 * 119.97274 * 179.97438 * 2 1 3 25 25 H 1.09006 * 109.46975 * 89.99578 * 1 2 3 26 26 H 1.08992 * 109.47393 * 210.00163 * 1 2 3 27 27 H 1.09001 * 109.46788 * 330.00131 * 1 2 3 28 28 H 1.08001 * 119.94454 * 359.97239 * 3 2 1 29 29 H 1.08001 * 119.97580 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47181 * 29.42465 * 6 5 4 31 31 H 1.09000 * 109.47266 * 149.42402 * 6 5 4 32 32 H 1.08996 * 109.47486 * 303.62660 * 8 7 6 33 33 H 1.09006 * 109.47335 * 63.62173 * 8 7 6 34 34 H 0.97004 * 119.99751 * 180.02562 * 12 11 9 35 35 H 1.09002 * 110.01753 * 30.14352 * 17 7 6 36 36 H 1.09006 * 110.48718 * 335.78555 * 18 17 7 37 37 H 1.09004 * 110.48290 * 98.42801 * 18 17 7 38 38 H 1.09002 * 110.71609 * 279.57209 * 19 18 17 39 39 H 1.09000 * 110.92469 * 156.29761 * 19 18 17 40 40 H 1.09007 * 110.48716 * 203.40573 * 20 19 18 41 41 H 1.09001 * 110.60112 * 80.82296 * 20 19 18 42 42 H 1.08996 * 110.03154 * 238.56532 * 21 17 7 43 43 H 1.08998 * 110.03261 * 359.95109 * 21 17 7 44 44 H 0.96699 * 114.00113 * 89.99799 * 23 22 5 45 45 H 1.08003 * 120.02282 * 0.04123 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2753 0.0072 -0.0005 6 6 5.7822 0.0115 -0.0017 7 7 6.2708 -0.0016 -1.3870 8 6 7.7334 0.1279 -1.4305 9 6 8.1888 0.1999 -2.8653 10 1 7.4605 0.2491 -3.6612 11 6 9.5353 0.2033 -3.1619 12 7 10.4222 0.1431 -2.1926 13 14 10.0998 0.2933 -4.9402 14 1 9.5934 1.5453 -5.5575 15 1 11.5839 0.2814 -4.9897 16 1 9.5708 -0.8761 -5.6873 17 6 5.8284 -1.2133 -2.0898 18 6 6.8848 -2.3273 -1.9388 19 6 6.8730 -3.0494 -3.3098 20 6 6.6810 -1.8825 -4.3099 21 6 5.6984 -0.9307 -3.5968 22 6 3.5846 -1.1958 0.0005 23 8 4.2657 -2.3717 -0.0050 24 6 2.1971 -1.1965 0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6565 2.1325 -0.0005 29 1 4.1176 2.1382 -0.0010 30 1 6.1433 0.9079 0.5025 31 1 6.1485 -0.8720 0.5212 32 1 8.0335 1.0362 -0.9080 33 1 8.1893 -0.7365 -0.9476 34 1 11.3696 0.1458 -2.4013 35 1 4.8719 -1.5489 -1.6890 36 1 7.8672 -1.8974 -1.7427 37 1 6.6024 -3.0153 -1.1418 38 1 6.0402 -3.7502 -3.3693 39 1 7.8191 -3.5601 -3.4890 40 1 6.2503 -2.2465 -5.2428 41 1 7.6294 -1.3798 -4.4994 42 1 4.6791 -1.1301 -3.9275 43 1 5.9627 0.1057 -3.8065 44 1 4.4672 -2.7138 0.8768 45 1 1.6570 -2.1318 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140949469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:13 Heat of formation + Delta-G solvation = -1.322706 kcal Electronic energy + Delta-G solvation = -24421.387481 eV Core-core repulsion = 21211.318736 eV Total energy + Delta-G solvation = -3210.068744 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09090 -38.24994 -36.69043 -34.48980 -32.85067 -31.93426 -29.73147 -28.47835 -27.87343 -27.17729 -25.72482 -23.29118 -22.55254 -21.69612 -20.63286 -19.68986 -18.29268 -17.55813 -16.79690 -15.90769 -15.56377 -15.31696 -14.67545 -14.64179 -14.22368 -13.83725 -13.56054 -13.51403 -13.07699 -12.98528 -12.63077 -12.34190 -12.12052 -11.68328 -11.60809 -11.57512 -11.24943 -11.09733 -10.85107 -10.77194 -10.31082 -10.28008 -10.21944 -10.06810 -9.96943 -9.74207 -9.31865 -9.15318 -8.69221 -8.59595 -8.36482 -8.23198 -7.00915 -5.95883 -3.92746 1.40028 1.49560 3.35580 3.40285 3.42883 3.74558 4.31715 4.48325 4.89196 4.96325 5.13579 5.21343 5.29256 5.40409 5.43801 5.51513 5.63972 5.69207 5.71497 5.76618 5.90204 5.96564 6.05747 6.18814 6.30007 6.38101 6.48200 6.55943 6.57906 6.62735 6.64699 6.76815 6.82504 6.83967 6.89024 6.95679 7.01384 7.15996 7.17623 7.41037 7.54415 7.70854 7.83520 7.99590 8.20626 8.34469 8.67795 9.14466 9.68764 11.15677 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023498 B = 0.004903 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.314973 B = 5709.680606 C = 5998.610354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.083 4.083 3 C -0.132 4.132 4 C -0.083 4.083 5 C -0.091 4.091 6 C 0.094 3.906 7 N -0.526 5.526 8 C 0.186 3.814 9 C -0.504 4.504 10 H 0.084 0.916 11 C 0.056 3.944 12 N -0.901 5.901 13 Si 0.883 3.117 14 H -0.277 1.277 15 H -0.290 1.290 16 H -0.274 1.274 17 C 0.093 3.907 18 C -0.158 4.158 19 C -0.110 4.110 20 C -0.125 4.125 21 C -0.106 4.106 22 C 0.112 3.888 23 O -0.487 6.487 24 C -0.150 4.150 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.021 0.979 33 H 0.008 0.992 34 H 0.259 0.741 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.039 0.961 38 H 0.044 0.956 39 H 0.051 0.949 40 H 0.037 0.963 41 H 0.088 0.912 42 H 0.034 0.966 43 H 0.084 0.916 44 H 0.380 0.620 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.752 -2.591 5.791 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.084 4.084 3 C -0.150 4.150 4 C -0.101 4.101 5 C -0.092 4.092 6 C -0.034 4.034 7 N -0.249 5.249 8 C 0.061 3.939 9 C -0.543 4.543 10 H 0.102 0.898 11 C -0.144 4.144 12 N -0.542 5.542 13 Si 0.711 3.289 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.199 1.199 17 C -0.016 4.016 18 C -0.196 4.196 19 C -0.148 4.148 20 C -0.163 4.163 21 C -0.144 4.144 22 C 0.067 3.933 23 O -0.297 6.297 24 C -0.169 4.169 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.138 0.862 29 H 0.145 0.855 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.106 0.894 42 H 0.052 0.948 43 H 0.103 0.897 44 H 0.236 0.764 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.777 -2.115 4.975 16.678 hybrid contribution 0.901 -0.789 -0.080 1.200 sum -14.877 -2.904 4.895 15.928 Atomic orbital electron populations 1.20753 0.91386 1.02397 1.02206 1.19681 0.95750 0.92772 1.00181 1.20994 0.94224 0.97284 1.02520 1.20956 0.93592 0.97719 0.97850 1.20344 0.96846 0.92327 0.99723 1.20880 0.88960 1.00437 0.93072 1.62517 1.15473 1.36948 1.09984 1.19899 0.80349 0.95763 0.97881 1.21626 0.91576 1.48371 0.92695 0.89811 1.24928 0.96874 0.95971 0.96672 1.69948 1.01221 1.51696 1.31323 0.86819 0.77440 0.78786 0.85871 1.20256 1.21587 1.19930 1.22231 0.97319 0.88124 0.93913 1.23194 1.03598 0.97246 0.95554 1.22235 0.99233 0.96875 0.96495 1.22535 1.01240 0.96411 0.96102 1.22243 0.96134 1.01167 0.94868 1.18262 0.89499 0.85239 1.00259 1.84990 1.76081 1.36031 1.32593 1.21177 0.93331 0.98037 1.04338 0.91309 0.91848 0.91670 0.86242 0.85518 0.90962 0.95031 0.96100 0.97461 0.93142 0.90153 0.87236 0.94198 0.93698 0.93058 0.94385 0.89406 0.94770 0.89730 0.76433 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.08 -1.00 5.88 -104.64 -0.62 -1.62 16 3 C -0.13 -1.65 9.70 -39.56 -0.38 -2.03 16 4 C -0.08 -1.19 9.70 -39.61 -0.38 -1.57 16 5 C -0.09 -1.45 4.91 -104.48 -0.51 -1.96 16 6 C 0.09 1.71 4.97 -4.98 -0.02 1.69 16 7 N -0.53 -11.24 4.41 -228.18 -1.01 -12.25 16 8 C 0.19 4.66 4.20 -4.98 -0.02 4.64 16 9 C -0.50 -13.36 5.80 -34.44 -0.20 -13.56 16 10 H 0.08 2.19 3.27 -52.49 -0.17 2.02 16 11 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 12 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 13 Si 0.88 21.36 28.43 -169.99 -4.83 16.53 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 H -0.27 -6.46 6.98 56.52 0.39 -6.06 16 17 C 0.09 1.90 2.44 -66.59 -0.16 1.73 16 18 C -0.16 -3.30 5.75 -25.03 -0.14 -3.44 16 19 C -0.11 -2.17 6.91 -24.70 -0.17 -2.34 16 20 C -0.13 -2.58 6.18 -25.07 -0.15 -2.73 16 21 C -0.11 -2.21 5.64 -25.61 -0.14 -2.35 16 22 C 0.11 1.64 5.40 -39.22 -0.21 1.43 16 23 O -0.49 -6.86 10.38 -19.42 -0.20 -7.06 16 24 C -0.15 -1.95 9.64 -39.43 -0.38 -2.33 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.07 1.28 8.04 -51.93 -0.42 0.86 16 31 H 0.03 0.57 7.55 -51.93 -0.39 0.18 16 32 H 0.02 0.57 8.11 -51.93 -0.42 0.15 16 33 H 0.01 0.21 5.79 -51.93 -0.30 -0.09 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.08 1.60 3.57 -51.93 -0.19 1.41 16 36 H 0.11 2.69 4.15 -51.93 -0.22 2.47 16 37 H 0.04 0.78 7.96 -51.93 -0.41 0.36 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.09 2.03 4.68 -51.93 -0.24 1.79 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.92 5.78 -51.93 -0.30 1.62 16 44 H 0.38 3.68 9.06 45.56 0.41 4.09 16 45 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 LS Contribution 337.60 15.07 5.09 5.09 Total: -1.00 -29.71 337.60 -9.47 -39.18 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.01 Total: 7.58 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -3.25 Total: -23.63 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.27 Total: -37.69 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.20 Total: -7.06 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.83 Total: 16.53 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.71 -9.47 -39.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140949469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.859 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds