Wall clock time and date at job start Tue Mar 31 2020 05:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38290 * 119.97121 * 2 1 4 4 C 1.38241 * 120.11068 * 180.02562 * 3 2 1 5 5 C 1.38170 * 120.05888 * 359.97438 * 4 3 2 6 6 C 1.50690 * 120.03292 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47223 * 269.42556 * 6 5 4 8 8 C 1.46897 * 111.00074 * 174.73987 * 7 6 5 9 9 C 1.50702 * 109.47099 * 183.61969 * 8 7 6 10 10 H 1.07998 * 119.99756 * 5.83263 * 9 8 7 11 11 C 1.37877 * 120.00069 * 185.82301 * 9 8 7 12 12 N 1.31514 * 119.99814 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99928 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47212 * 60.00102 * 13 11 9 15 15 H 1.48502 * 109.47345 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47219 * 299.99937 * 13 11 9 17 17 C 1.46901 * 110.99679 * 298.69618 * 7 6 5 18 18 C 1.54266 * 110.03215 * 268.74793 * 17 7 6 19 19 C 1.54963 * 104.16093 * 217.14094 * 18 17 7 20 20 C 1.54884 * 102.77712 * 37.88856 * 19 18 17 21 21 C 1.53881 * 110.02894 * 151.53263 * 17 7 6 22 22 C 1.38714 * 119.93916 * 359.97438 * 5 4 3 23 23 O 1.35898 * 120.05606 * 179.72999 * 22 5 4 24 24 C 1.38123 * 119.97274 * 179.97438 * 2 1 3 25 25 H 1.09006 * 109.46975 * 89.99578 * 1 2 3 26 26 H 1.08992 * 109.47393 * 210.00163 * 1 2 3 27 27 H 1.09001 * 109.46788 * 330.00131 * 1 2 3 28 28 H 1.08001 * 119.94454 * 359.97239 * 3 2 1 29 29 H 1.08001 * 119.97580 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47181 * 29.42465 * 6 5 4 31 31 H 1.09000 * 109.47266 * 149.42402 * 6 5 4 32 32 H 1.08996 * 109.47486 * 303.62660 * 8 7 6 33 33 H 1.09006 * 109.47335 * 63.62173 * 8 7 6 34 34 H 0.97004 * 119.99751 * 180.02562 * 12 11 9 35 35 H 1.09002 * 110.01753 * 30.14352 * 17 7 6 36 36 H 1.09006 * 110.48718 * 335.78555 * 18 17 7 37 37 H 1.09004 * 110.48290 * 98.42801 * 18 17 7 38 38 H 1.09002 * 110.71609 * 279.57209 * 19 18 17 39 39 H 1.09000 * 110.92469 * 156.29761 * 19 18 17 40 40 H 1.09007 * 110.48716 * 203.40573 * 20 19 18 41 41 H 1.09001 * 110.60112 * 80.82296 * 20 19 18 42 42 H 1.08996 * 110.03154 * 238.56532 * 21 17 7 43 43 H 1.08998 * 110.03261 * 359.95109 * 21 17 7 44 44 H 0.96699 * 114.00113 * 89.99799 * 23 22 5 45 45 H 1.08003 * 120.02282 * 0.04123 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2753 0.0072 -0.0005 6 6 5.7822 0.0115 -0.0017 7 7 6.2708 -0.0016 -1.3870 8 6 7.7334 0.1279 -1.4305 9 6 8.1888 0.1999 -2.8653 10 1 7.4605 0.2491 -3.6612 11 6 9.5353 0.2033 -3.1619 12 7 10.4222 0.1431 -2.1926 13 14 10.0998 0.2933 -4.9402 14 1 9.5934 1.5453 -5.5575 15 1 11.5839 0.2814 -4.9897 16 1 9.5708 -0.8761 -5.6873 17 6 5.8284 -1.2133 -2.0898 18 6 6.8848 -2.3273 -1.9388 19 6 6.8730 -3.0494 -3.3098 20 6 6.6810 -1.8825 -4.3099 21 6 5.6984 -0.9307 -3.5968 22 6 3.5846 -1.1958 0.0005 23 8 4.2657 -2.3717 -0.0050 24 6 2.1971 -1.1965 0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6565 2.1325 -0.0005 29 1 4.1176 2.1382 -0.0010 30 1 6.1433 0.9079 0.5025 31 1 6.1485 -0.8720 0.5212 32 1 8.0335 1.0362 -0.9080 33 1 8.1893 -0.7365 -0.9476 34 1 11.3696 0.1458 -2.4013 35 1 4.8719 -1.5489 -1.6890 36 1 7.8672 -1.8974 -1.7427 37 1 6.6024 -3.0153 -1.1418 38 1 6.0402 -3.7502 -3.3693 39 1 7.8191 -3.5601 -3.4890 40 1 6.2503 -2.2465 -5.2428 41 1 7.6294 -1.3798 -4.4994 42 1 4.6791 -1.1301 -3.9275 43 1 5.9627 0.1057 -3.8065 44 1 4.4672 -2.7138 0.8768 45 1 1.6570 -2.1318 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140949469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:13 Heat of formation + Delta-G solvation = -19.565460 kcal Electronic energy + Delta-G solvation = -24422.178546 eV Core-core repulsion = 21211.318736 eV Total energy + Delta-G solvation = -3210.859810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29779 -39.78802 -37.72154 -36.00244 -34.74021 -33.30641 -30.76581 -29.89060 -29.53042 -28.91292 -27.17399 -24.81215 -23.67852 -23.41360 -21.76091 -21.32693 -19.86834 -18.76213 -18.67754 -17.06659 -17.00736 -16.74550 -16.29433 -16.20402 -15.73553 -15.22731 -14.86219 -14.72977 -14.50555 -14.29505 -14.01119 -13.74909 -13.42049 -13.21615 -12.95730 -12.84426 -12.80403 -12.49761 -12.43243 -12.20256 -12.06931 -11.94722 -11.76690 -11.66436 -11.60406 -11.20748 -11.04146 -10.97197 -10.57680 -10.48176 -9.64178 -9.32175 -8.76163 -8.08667 -6.10745 0.36001 0.45827 1.41783 1.42620 1.49087 2.45146 2.71034 3.25811 3.30818 3.54226 3.88724 3.95757 4.03100 4.07977 4.13893 4.30940 4.35520 4.50479 4.61462 4.70472 4.75834 4.83004 4.89626 4.91927 4.94183 4.96438 5.00266 5.05068 5.15603 5.18245 5.21087 5.26452 5.31598 5.33203 5.39038 5.47814 5.59614 5.67820 5.72907 5.74760 5.84986 5.93204 6.03649 6.23340 6.51447 6.81847 6.89352 7.04927 7.55106 9.03252 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023498 B = 0.004903 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.314973 B = 5709.680606 C = 5998.610354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.077 4.077 3 C -0.134 4.134 4 C -0.094 4.094 5 C -0.117 4.117 6 C 0.099 3.901 7 N -0.531 5.531 8 C 0.202 3.798 9 C -0.500 4.500 10 H 0.090 0.910 11 C 0.007 3.993 12 N -0.939 5.939 13 Si 0.938 3.062 14 H -0.272 1.272 15 H -0.292 1.292 16 H -0.262 1.262 17 C 0.097 3.903 18 C -0.154 4.154 19 C -0.106 4.106 20 C -0.126 4.126 21 C -0.106 4.106 22 C 0.108 3.892 23 O -0.501 6.501 24 C -0.154 4.154 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.124 0.876 30 H 0.064 0.936 31 H 0.027 0.973 32 H -0.011 1.011 33 H -0.015 1.015 34 H 0.257 0.743 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.398 0.602 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.863 -3.415 4.928 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.077 4.077 3 C -0.152 4.152 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.029 4.029 7 N -0.254 5.254 8 C 0.076 3.924 9 C -0.539 4.539 10 H 0.107 0.893 11 C -0.190 4.190 12 N -0.581 5.581 13 Si 0.765 3.235 14 H -0.197 1.197 15 H -0.218 1.218 16 H -0.186 1.186 17 C -0.012 4.012 18 C -0.192 4.192 19 C -0.144 4.144 20 C -0.164 4.164 21 C -0.144 4.144 22 C 0.063 3.937 23 O -0.314 6.314 24 C -0.173 4.173 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.162 0.838 29 H 0.142 0.858 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.007 0.993 33 H 0.003 0.997 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.256 0.744 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.911 -2.945 4.119 19.578 hybrid contribution 1.760 -0.532 0.278 1.860 sum -17.151 -3.477 4.397 18.044 Atomic orbital electron populations 1.20830 0.88739 1.03919 1.03137 1.20119 0.97648 0.92092 0.97881 1.21278 0.93361 0.98821 1.01694 1.21066 0.94786 0.97167 0.98216 1.20162 0.94990 0.93761 1.02866 1.20814 0.91198 0.99864 0.91035 1.62410 1.12761 1.37880 1.12375 1.19559 0.82843 0.93219 0.96765 1.21910 0.91729 1.46840 0.93375 0.89256 1.25650 0.97132 0.95954 1.00227 1.70086 1.01307 1.53393 1.33311 0.85915 0.76737 0.79235 0.81660 1.19718 1.21778 1.18643 1.22262 0.97610 0.87406 0.93874 1.23047 1.01484 0.97689 0.96993 1.22238 1.00205 0.96901 0.95056 1.22490 0.99887 0.96445 0.97535 1.22224 0.97313 0.99820 0.95018 1.18363 0.90285 0.84757 1.00320 1.84890 1.76259 1.35833 1.34377 1.21419 0.92565 0.99370 1.03924 0.90480 0.90490 0.90137 0.83770 0.85819 0.91716 0.95435 0.99263 0.99735 0.93407 0.88770 0.91257 0.93062 0.91036 0.93329 0.91747 0.92307 0.92707 0.92045 0.74378 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 10.01 71.24 0.71 -0.76 16 2 C -0.08 -1.60 5.88 -19.88 -0.12 -1.71 16 3 C -0.13 -3.01 9.70 22.28 0.22 -2.79 16 4 C -0.09 -2.63 9.70 22.25 0.22 -2.41 16 5 C -0.12 -3.66 4.91 -19.77 -0.10 -3.75 16 6 C 0.10 3.69 4.97 85.55 0.43 4.12 16 7 N -0.53 -23.34 4.41 -875.82 -3.86 -27.20 16 8 C 0.20 10.65 4.20 85.56 0.36 11.01 16 9 C -0.50 -27.30 5.80 25.60 0.15 -27.15 16 10 H 0.09 4.74 3.27 -2.91 -0.01 4.73 16 11 C 0.01 0.40 5.46 84.65 0.46 0.86 16 12 N -0.94 -56.57 13.29 21.45 0.28 -56.28 16 13 Si 0.94 44.45 28.43 68.60 1.95 46.40 16 14 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 15 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 16 H -0.26 -11.79 6.98 99.48 0.69 -11.10 16 17 C 0.10 3.92 2.44 45.64 0.11 4.03 16 18 C -0.15 -6.43 5.75 31.69 0.18 -6.25 16 19 C -0.11 -4.01 6.91 31.91 0.22 -3.79 16 20 C -0.13 -4.99 6.18 31.67 0.20 -4.79 16 21 C -0.11 -4.27 5.64 31.32 0.18 -4.09 16 22 C 0.11 2.98 5.40 22.51 0.12 3.10 16 23 O -0.50 -13.34 10.38 -92.40 -0.96 -14.30 16 24 C -0.15 -3.56 9.64 22.37 0.22 -3.35 16 25 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 27 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 28 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 29 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.06 2.44 8.04 -2.39 -0.02 2.42 16 31 H 0.03 1.03 7.55 -2.39 -0.02 1.01 16 32 H -0.01 -0.62 8.11 -2.39 -0.02 -0.64 16 33 H -0.01 -0.84 5.79 -2.38 -0.01 -0.85 16 34 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.09 3.61 3.57 -2.39 -0.01 3.61 16 36 H 0.07 3.52 4.15 -2.38 -0.01 3.51 16 37 H 0.05 1.97 7.96 -2.38 -0.02 1.96 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 41 H 0.06 2.67 4.68 -2.39 -0.01 2.66 16 42 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.06 2.76 5.78 -2.39 -0.01 2.75 16 44 H 0.40 7.20 9.06 -74.06 -0.67 6.53 16 45 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -65.32 337.60 1.28 -64.04 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.32 Total: 25.07 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 3.55 Total: -37.73 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -3.58 Total: -83.48 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.96 Total: -14.30 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.95 Total: 46.40 kcal Total: -65.32 1.28 -64.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140949469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.474 kcal (2) G-P(sol) polarization free energy of solvation -65.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds