Wall clock time and date at job start Tue Mar 31 2020 06:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47512 * 2 1 4 4 C 1.53000 * 109.47023 * 240.00227 * 2 1 3 5 5 C 1.50699 * 109.47437 * 120.00232 * 2 1 3 6 6 C 1.38171 * 120.02521 * 0.02562 * 5 2 1 7 7 C 1.38244 * 120.05436 * 180.27947 * 6 5 2 8 8 C 1.38293 * 120.11190 * 359.48377 * 7 6 5 9 9 C 1.38125 * 120.05080 * 0.51384 * 8 7 6 10 10 C 1.50702 * 120.02220 * 179.72640 * 9 8 7 11 11 N 1.46904 * 109.46803 * 260.01871 * 10 9 8 12 12 C 1.47477 * 111.00058 * 265.97152 * 11 10 9 13 13 C 1.53511 * 87.93200 * 221.29593 * 12 11 10 14 14 C 1.50702 * 114.34175 * 139.68771 * 13 12 11 15 15 H 1.08007 * 119.99711 * 266.07771 * 14 13 12 16 16 C 1.37874 * 120.00405 * 86.07725 * 14 13 12 17 17 N 1.31515 * 120.00307 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00020 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.46926 * 90.00085 * 18 16 14 20 20 H 1.48494 * 109.47449 * 210.00202 * 18 16 14 21 21 H 1.48506 * 109.46969 * 330.00365 * 18 16 14 22 22 C 1.47481 * 110.99944 * 170.00104 * 11 10 9 23 23 C 1.38706 * 120.03061 * 180.02562 * 5 2 1 24 24 O 1.35900 * 120.05761 * 0.02562 * 23 5 2 25 25 H 1.09002 * 109.46959 * 299.99959 * 1 2 3 26 26 H 1.08998 * 109.47321 * 59.99400 * 1 2 3 27 27 H 1.09000 * 109.47369 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47489 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47317 * 300.00602 * 3 2 1 30 30 H 1.09002 * 109.46975 * 60.00051 * 3 2 1 31 31 H 1.08998 * 109.47339 * 299.99760 * 4 2 1 32 32 H 1.09007 * 109.47356 * 59.99988 * 4 2 1 33 33 H 1.09005 * 109.47048 * 180.02562 * 4 2 1 34 34 H 1.08002 * 119.96962 * 359.97438 * 6 5 2 35 35 H 1.08001 * 119.94456 * 179.72259 * 7 6 5 36 36 H 1.07994 * 119.97145 * 180.27882 * 8 7 6 37 37 H 1.08995 * 109.47719 * 20.01711 * 10 9 8 38 38 H 1.08997 * 109.47266 * 140.02341 * 10 9 8 39 39 H 1.08998 * 113.47808 * 336.06461 * 12 11 10 40 40 H 1.09008 * 113.47576 * 106.53220 * 12 11 10 41 41 H 1.08997 * 114.17350 * 272.37761 * 13 12 11 42 42 H 0.96995 * 120.00498 * 179.97438 * 17 16 14 43 43 H 1.08996 * 113.47639 * 253.47113 * 22 11 10 44 44 H 1.08995 * 113.47717 * 23.87661 * 22 11 10 45 45 H 0.96698 * 114.00174 * 89.99595 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.1350 -1.2363 2.1400 7 6 1.5952 -1.8830 3.2718 8 6 2.9542 -2.0149 3.4913 9 6 3.8553 -1.4910 2.5850 10 6 5.3361 -1.6296 2.8280 11 7 5.8605 -0.3752 3.3843 12 6 6.3891 0.4957 2.3180 13 6 7.5635 0.8289 3.2488 14 6 8.9008 0.9057 2.5584 15 1 9.5415 0.0369 2.5241 16 6 9.3065 2.0850 1.9705 17 7 10.4733 2.1519 1.3675 18 14 8.1980 3.5875 2.0291 19 1 8.5022 4.3797 3.2476 20 1 8.4326 4.4230 0.8241 21 1 6.7780 3.1540 2.0621 22 6 7.2475 -0.5452 3.8559 23 6 3.3959 -0.8370 1.4507 24 8 4.2805 -0.3203 0.5579 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6765 -0.2073 -2.1393 33 1 3.1299 -0.7216 -1.2491 34 1 0.0731 -1.1376 1.9691 35 1 0.8922 -2.2895 3.9839 36 1 3.3112 -2.5245 4.3740 37 1 5.5143 -2.4420 3.5324 38 1 5.8399 -1.8481 1.8864 39 1 6.6864 -0.0476 1.4211 40 1 5.7508 1.3523 2.1006 41 1 7.3770 1.6670 3.9202 42 1 10.7586 2.9814 0.9536 43 1 7.3368 -0.5710 4.9419 44 1 7.7736 -1.3670 3.3702 45 1 4.5361 0.5941 0.7416 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143104307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:52 Heat of formation + Delta-G solvation = 6.948346 kcal Electronic energy + Delta-G solvation = -23927.487552 eV Core-core repulsion = 20717.777467 eV Total energy + Delta-G solvation = -3209.710085 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.54263 -38.99568 -36.50360 -36.44961 -32.84900 -31.74405 -29.37929 -28.83241 -27.49879 -27.25728 -25.55048 -25.10360 -22.91607 -22.54142 -20.97071 -18.99423 -18.77541 -17.94759 -17.04867 -16.19982 -15.83898 -15.33951 -14.79334 -14.62586 -14.33033 -14.09456 -13.97539 -13.76659 -13.52286 -13.08745 -12.65876 -12.44889 -12.30889 -11.92973 -11.91262 -11.84148 -11.70416 -11.63840 -11.50270 -11.29174 -11.00777 -10.99246 -10.71975 -10.39461 -10.02880 -9.94616 -9.84849 -9.63408 -9.16239 -8.61233 -8.53096 -8.34329 -8.15463 -6.12629 -4.13103 1.37564 1.42827 3.26535 3.35453 3.37816 3.68070 4.38967 4.39829 4.52166 4.70937 4.83763 4.93424 5.02681 5.08774 5.15499 5.22035 5.36261 5.47893 5.53887 5.57233 5.58084 5.68953 5.74563 5.80288 5.86549 5.88286 5.94943 5.96929 6.05721 6.10606 6.19127 6.22817 6.30231 6.38272 6.38383 6.47507 6.54961 6.58104 6.63873 6.69758 6.93427 6.99904 7.32666 7.65723 7.80218 7.86215 8.46612 8.90712 9.50105 10.99984 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018352 B = 0.004990 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.320281 B = 5609.499913 C = 6555.477150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.021 4.021 3 C -0.144 4.144 4 C -0.141 4.141 5 C -0.099 4.099 6 C -0.117 4.117 7 C -0.131 4.131 8 C -0.100 4.100 9 C -0.084 4.084 10 C 0.058 3.942 11 N -0.479 5.479 12 C -0.011 4.011 13 C 0.001 3.999 14 C -0.511 4.511 15 H 0.074 0.926 16 C 0.074 3.926 17 N -0.898 5.898 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.259 1.259 22 C 0.009 3.991 23 C 0.122 3.878 24 O -0.492 6.492 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.264 0.736 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.134 -5.554 -0.709 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 C -0.201 4.201 4 C -0.199 4.199 5 C -0.099 4.099 6 C -0.135 4.135 7 C -0.149 4.149 8 C -0.118 4.118 9 C -0.085 4.085 10 C -0.070 4.070 11 N -0.201 5.201 12 C -0.140 4.140 13 C -0.019 4.019 14 C -0.549 4.549 15 H 0.092 0.908 16 C -0.128 4.128 17 N -0.535 5.535 18 Si 0.704 3.296 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.183 1.183 22 C -0.119 4.119 23 C 0.077 3.923 24 O -0.305 6.305 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -20.575 -5.768 -0.634 21.377 hybrid contribution 0.099 0.881 -0.352 0.954 sum -20.475 -4.887 -0.987 21.074 Atomic orbital electron populations 1.21966 0.94587 1.01704 1.01722 1.19350 0.95018 0.94951 0.92733 1.21922 1.01794 0.94655 1.01708 1.21940 1.03124 0.99368 0.95420 1.20107 0.92494 1.00363 0.96956 1.20981 0.99331 0.98925 0.94239 1.21061 0.95452 1.00566 0.97803 1.20903 0.92656 0.99814 0.98472 1.20145 0.96170 0.98860 0.93293 1.21529 0.90976 0.94795 0.99699 1.68923 1.18605 1.09673 1.22909 1.24495 0.97646 0.96396 0.95494 1.20502 0.94243 0.93127 0.94003 1.20914 1.00540 0.98780 1.34624 0.90792 1.25006 0.94669 0.98662 0.94471 1.69906 1.19899 1.27295 1.36444 0.86867 0.82139 0.82995 0.77609 1.20342 1.21497 1.18335 1.23788 0.88019 1.00261 0.99874 1.18087 0.87510 0.97515 0.89178 1.84800 1.62199 1.33311 1.50199 0.92440 0.92500 0.92433 0.92063 0.92296 0.92705 0.93177 0.92949 0.90441 0.85750 0.86271 0.86052 0.91018 0.92244 0.90880 0.92572 0.92687 0.92578 0.91531 0.91993 0.75324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 7.13 37.15 0.26 -1.04 16 2 C -0.02 -0.23 0.75 -155.66 -0.12 -0.35 16 3 C -0.14 -1.60 8.26 37.16 0.31 -1.30 16 4 C -0.14 -1.61 8.26 37.16 0.31 -1.30 16 5 C -0.10 -1.29 4.77 -104.47 -0.50 -1.78 16 6 C -0.12 -1.38 8.97 -39.60 -0.36 -1.73 16 7 C -0.13 -1.54 10.04 -39.56 -0.40 -1.94 16 8 C -0.10 -1.33 9.67 -39.60 -0.38 -1.72 16 9 C -0.08 -1.28 5.48 -104.47 -0.57 -1.85 16 10 C 0.06 0.96 4.71 -4.97 -0.02 0.94 16 11 N -0.48 -8.94 6.32 -246.11 -1.55 -10.49 16 12 C -0.01 -0.23 4.75 -7.55 -0.04 -0.27 16 13 C 0.00 0.02 2.95 -91.24 -0.27 -0.25 16 14 C -0.51 -13.88 9.38 -34.44 -0.32 -14.21 16 15 H 0.07 2.19 8.06 -52.48 -0.42 1.77 16 16 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 17 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 18 Si 0.88 20.84 27.14 -169.99 -4.61 16.23 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.26 -5.76 5.68 56.52 0.32 -5.44 16 22 C 0.01 0.18 7.25 -7.55 -0.05 0.13 16 23 C 0.12 1.83 6.26 -39.22 -0.25 1.58 16 24 O -0.49 -7.53 8.17 -19.42 -0.16 -7.69 16 25 H 0.06 0.50 7.52 -51.93 -0.39 0.11 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.50 7.51 -51.93 -0.39 0.11 16 28 H 0.06 0.73 5.32 -51.93 -0.28 0.46 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 1.02 6.14 -51.93 -0.32 0.70 16 34 H 0.12 1.19 5.90 -52.49 -0.31 0.88 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.12 1.44 8.04 -52.49 -0.42 1.02 16 37 H 0.07 1.08 7.94 -51.93 -0.41 0.67 16 38 H 0.06 1.05 7.01 -51.93 -0.36 0.68 16 39 H 0.07 1.54 7.09 -51.93 -0.37 1.17 16 40 H 0.06 1.11 6.16 -51.92 -0.32 0.79 16 41 H 0.06 1.28 7.04 -51.93 -0.37 0.92 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.06 1.23 7.87 -51.93 -0.41 0.83 16 45 H 0.39 5.66 5.40 45.56 0.25 5.90 16 LS Contribution 341.78 15.07 5.15 5.15 Total: -1.00 -29.31 341.78 -9.59 -38.91 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.70 Total: 7.09 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -2.49 Total: -23.11 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.78 Total: -36.57 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.16 Total: -7.69 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.61 Total: 16.23 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.31 -9.59 -38.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143104307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.854 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds