Wall clock time and date at job start Tue Mar 31 2020 06:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47512 * 2 1 4 4 C 1.53000 * 109.47023 * 240.00227 * 2 1 3 5 5 C 1.50699 * 109.47437 * 120.00232 * 2 1 3 6 6 C 1.38171 * 120.02521 * 0.02562 * 5 2 1 7 7 C 1.38244 * 120.05436 * 180.27947 * 6 5 2 8 8 C 1.38293 * 120.11190 * 359.48377 * 7 6 5 9 9 C 1.38125 * 120.05080 * 0.51384 * 8 7 6 10 10 C 1.50702 * 120.02220 * 179.72640 * 9 8 7 11 11 N 1.46904 * 109.46803 * 260.01871 * 10 9 8 12 12 C 1.47477 * 111.00058 * 265.97152 * 11 10 9 13 13 C 1.53511 * 87.93200 * 221.29593 * 12 11 10 14 14 C 1.50702 * 114.34175 * 139.68771 * 13 12 11 15 15 H 1.08007 * 119.99711 * 266.07771 * 14 13 12 16 16 C 1.37874 * 120.00405 * 86.07725 * 14 13 12 17 17 N 1.31515 * 120.00307 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00020 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.46926 * 90.00085 * 18 16 14 20 20 H 1.48494 * 109.47449 * 210.00202 * 18 16 14 21 21 H 1.48506 * 109.46969 * 330.00365 * 18 16 14 22 22 C 1.47481 * 110.99944 * 170.00104 * 11 10 9 23 23 C 1.38706 * 120.03061 * 180.02562 * 5 2 1 24 24 O 1.35900 * 120.05761 * 0.02562 * 23 5 2 25 25 H 1.09002 * 109.46959 * 299.99959 * 1 2 3 26 26 H 1.08998 * 109.47321 * 59.99400 * 1 2 3 27 27 H 1.09000 * 109.47369 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47489 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47317 * 300.00602 * 3 2 1 30 30 H 1.09002 * 109.46975 * 60.00051 * 3 2 1 31 31 H 1.08998 * 109.47339 * 299.99760 * 4 2 1 32 32 H 1.09007 * 109.47356 * 59.99988 * 4 2 1 33 33 H 1.09005 * 109.47048 * 180.02562 * 4 2 1 34 34 H 1.08002 * 119.96962 * 359.97438 * 6 5 2 35 35 H 1.08001 * 119.94456 * 179.72259 * 7 6 5 36 36 H 1.07994 * 119.97145 * 180.27882 * 8 7 6 37 37 H 1.08995 * 109.47719 * 20.01711 * 10 9 8 38 38 H 1.08997 * 109.47266 * 140.02341 * 10 9 8 39 39 H 1.08998 * 113.47808 * 336.06461 * 12 11 10 40 40 H 1.09008 * 113.47576 * 106.53220 * 12 11 10 41 41 H 1.08997 * 114.17350 * 272.37761 * 13 12 11 42 42 H 0.96995 * 120.00498 * 179.97438 * 17 16 14 43 43 H 1.08996 * 113.47639 * 253.47113 * 22 11 10 44 44 H 1.08995 * 113.47717 * 23.87661 * 22 11 10 45 45 H 0.96698 * 114.00174 * 89.99595 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.1350 -1.2363 2.1400 7 6 1.5952 -1.8830 3.2718 8 6 2.9542 -2.0149 3.4913 9 6 3.8553 -1.4910 2.5850 10 6 5.3361 -1.6296 2.8280 11 7 5.8605 -0.3752 3.3843 12 6 6.3891 0.4957 2.3180 13 6 7.5635 0.8289 3.2488 14 6 8.9008 0.9057 2.5584 15 1 9.5415 0.0369 2.5241 16 6 9.3065 2.0850 1.9705 17 7 10.4733 2.1519 1.3675 18 14 8.1980 3.5875 2.0291 19 1 8.5022 4.3797 3.2476 20 1 8.4326 4.4230 0.8241 21 1 6.7780 3.1540 2.0621 22 6 7.2475 -0.5452 3.8559 23 6 3.3959 -0.8370 1.4507 24 8 4.2805 -0.3203 0.5579 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6765 -0.2073 -2.1393 33 1 3.1299 -0.7216 -1.2491 34 1 0.0731 -1.1376 1.9691 35 1 0.8922 -2.2895 3.9839 36 1 3.3112 -2.5245 4.3740 37 1 5.5143 -2.4420 3.5324 38 1 5.8399 -1.8481 1.8864 39 1 6.6864 -0.0476 1.4211 40 1 5.7508 1.3523 2.1006 41 1 7.3770 1.6670 3.9202 42 1 10.7586 2.9814 0.9536 43 1 7.3368 -0.5710 4.9419 44 1 7.7736 -1.3670 3.3702 45 1 4.5361 0.5941 0.7416 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143104307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:51 Heat of formation + Delta-G solvation = -11.883759 kcal Electronic energy + Delta-G solvation = -23928.304173 eV Core-core repulsion = 20717.777467 eV Total energy + Delta-G solvation = -3210.526706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.65574 -40.47500 -37.57631 -37.39102 -34.80469 -33.15407 -30.45320 -30.20338 -28.42356 -28.13386 -27.09057 -26.75324 -24.21608 -23.72993 -22.14274 -20.51582 -19.94603 -19.20360 -18.91952 -17.25771 -16.93797 -16.83508 -16.23796 -15.96912 -15.44805 -15.31083 -15.12230 -14.96875 -14.82737 -14.58376 -14.26532 -13.51660 -13.31951 -13.27276 -13.11086 -12.97055 -12.88878 -12.72184 -12.61133 -12.48931 -12.29925 -12.12384 -11.84174 -11.82804 -11.63467 -11.54795 -11.43759 -11.10966 -10.88260 -10.65067 -9.82747 -9.52844 -9.36948 -8.29196 -6.34607 0.36824 0.43043 1.38070 1.39510 1.51670 2.37385 2.67186 3.04106 3.28624 3.42168 3.63478 3.78397 3.89390 4.07101 4.12954 4.15613 4.27874 4.32629 4.39716 4.51176 4.54978 4.63903 4.67530 4.73593 4.76883 4.77772 4.84267 4.89926 4.93661 4.98084 4.99845 5.04831 5.07721 5.16985 5.30286 5.32669 5.38901 5.45845 5.47848 5.61507 5.62860 5.63770 5.75118 5.98044 6.21523 6.29475 6.70808 6.75271 7.32260 8.87057 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018352 B = 0.004990 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.320281 B = 5609.499913 C = 6555.477150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.021 4.021 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.104 4.104 6 C -0.114 4.114 7 C -0.126 4.126 8 C -0.106 4.106 9 C -0.109 4.109 10 C 0.064 3.936 11 N -0.468 5.468 12 C 0.005 3.995 13 C -0.014 4.014 14 C -0.514 4.514 15 H 0.032 0.968 16 C 0.016 3.984 17 N -0.949 5.949 18 Si 0.943 3.057 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.234 1.234 22 C 0.016 3.984 23 C 0.100 3.900 24 O -0.501 6.501 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.135 0.865 37 H 0.086 0.914 38 H 0.041 0.959 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.266 0.734 43 H 0.084 0.916 44 H 0.054 0.946 45 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.026 -5.261 0.114 24.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.021 4.021 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.105 4.105 6 C -0.132 4.132 7 C -0.144 4.144 8 C -0.125 4.125 9 C -0.110 4.110 10 C -0.064 4.064 11 N -0.190 5.190 12 C -0.124 4.124 13 C -0.033 4.033 14 C -0.552 4.552 15 H 0.050 0.950 16 C -0.181 4.181 17 N -0.589 5.589 18 Si 0.766 3.234 19 H -0.197 1.197 20 H -0.215 1.215 21 H -0.157 1.157 22 C -0.113 4.113 23 C 0.056 3.944 24 O -0.314 6.314 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.169 0.831 35 H 0.168 0.832 36 H 0.152 0.848 37 H 0.104 0.896 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.072 0.928 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -24.487 -5.501 0.202 25.098 hybrid contribution 1.320 0.665 -0.600 1.595 sum -23.167 -4.836 -0.398 23.670 Atomic orbital electron populations 1.21942 0.92578 1.02455 1.02655 1.19403 0.96574 0.94494 0.91671 1.21927 1.00947 0.94933 1.02319 1.21895 1.01618 0.99646 0.96394 1.20363 0.91865 1.00375 0.97893 1.21363 1.00505 0.97697 0.93633 1.21433 0.95237 0.99526 0.98172 1.21128 0.93282 0.99640 0.98432 1.20149 0.95388 1.00850 0.94581 1.21462 0.92100 0.93912 0.98964 1.68904 1.17356 1.10704 1.22031 1.24186 0.96464 0.96931 0.94843 1.20506 0.92754 0.95069 0.94998 1.21127 1.02011 0.97397 1.34695 0.95012 1.25897 0.96079 1.02116 0.94023 1.70057 1.22235 1.28360 1.38212 0.85809 0.81313 0.78656 0.77602 1.19725 1.21456 1.15668 1.23680 0.88727 0.98143 1.00765 1.18350 0.88376 0.98317 0.89401 1.84811 1.62708 1.33283 1.50615 0.91725 0.91437 0.91736 0.93463 0.91036 0.92689 0.93271 0.91594 0.92747 0.83105 0.83161 0.84757 0.89610 0.94107 0.92330 0.91541 0.92318 0.92491 0.89769 0.92784 0.75557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 7.13 71.98 0.51 -1.55 16 2 C -0.02 -0.43 0.75 -52.93 -0.04 -0.47 16 3 C -0.14 -2.96 8.26 71.98 0.59 -2.37 16 4 C -0.14 -2.98 8.26 71.98 0.59 -2.38 16 5 C -0.10 -2.50 4.77 -19.77 -0.09 -2.60 16 6 C -0.11 -2.29 8.97 22.26 0.20 -2.09 16 7 C -0.13 -2.50 10.04 22.28 0.22 -2.27 16 8 C -0.11 -2.57 9.67 22.26 0.22 -2.35 16 9 C -0.11 -3.20 5.48 -19.77 -0.11 -3.30 16 10 C 0.06 2.06 4.71 85.56 0.40 2.47 16 11 N -0.47 -17.01 6.32 -932.55 -5.89 -22.90 16 12 C 0.00 0.20 4.75 83.57 0.40 0.59 16 13 C -0.01 -0.64 2.95 -11.20 -0.03 -0.67 16 14 C -0.51 -28.89 9.38 25.60 0.24 -28.65 16 15 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 16 C 0.02 0.94 5.47 84.65 0.46 1.40 16 17 N -0.95 -58.77 13.96 21.45 0.30 -58.47 16 18 Si 0.94 43.07 27.14 68.60 1.86 44.93 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.23 -9.61 5.68 99.48 0.56 -9.04 16 22 C 0.02 0.61 7.25 83.57 0.61 1.22 16 23 C 0.10 2.91 6.26 22.50 0.14 3.06 16 24 O -0.50 -15.49 8.17 -92.42 -0.76 -16.25 16 25 H 0.06 0.87 7.52 -2.39 -0.02 0.86 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.87 7.51 -2.39 -0.02 0.85 16 28 H 0.05 1.09 5.32 -2.39 -0.01 1.08 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.05 1.42 6.14 -2.38 -0.01 1.41 16 34 H 0.15 2.20 5.90 -2.91 -0.02 2.18 16 35 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.13 2.81 8.04 -2.91 -0.02 2.78 16 37 H 0.09 2.50 7.94 -2.39 -0.02 2.48 16 38 H 0.04 1.47 7.01 -2.39 -0.02 1.45 16 39 H 0.06 2.53 7.09 -2.39 -0.02 2.52 16 40 H 0.07 2.54 6.16 -2.38 -0.01 2.52 16 41 H 0.06 2.66 7.04 -2.39 -0.02 2.64 16 42 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 44 H 0.05 2.20 7.87 -2.39 -0.02 2.18 16 45 H 0.39 11.38 5.40 -74.06 -0.40 10.98 16 Total: -1.00 -64.87 341.78 0.27 -64.60 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.44 Total: 28.05 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 4.31 Total: -39.97 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -5.59 Total: -81.37 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.76 Total: -16.25 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.86 Total: 44.93 kcal Total: -64.87 0.27 -64.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143104307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.720 kcal (2) G-P(sol) polarization free energy of solvation -64.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds