Wall clock time and date at job start Tue Mar 31 2020 06:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47356 * 2 1 4 4 C 1.53000 * 109.47447 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46936 * 60.00008 * 4 3 2 6 6 C 1.52999 * 109.47050 * 300.00230 * 4 3 2 7 7 C 1.50695 * 109.47133 * 179.97438 * 4 3 2 8 8 O 1.21292 * 120.00420 * 351.88912 * 7 4 3 9 9 N 1.34784 * 119.99604 * 171.88742 * 7 4 3 10 10 C 1.37099 * 120.00207 * 355.20053 * 9 7 4 11 11 H 1.08001 * 119.99752 * 49.53573 * 10 9 7 12 12 C 1.38940 * 119.99941 * 229.53895 * 10 9 7 13 13 N 1.31414 * 120.00163 * 8.79241 * 12 10 9 14 14 Si 1.86807 * 119.99967 * 188.79588 * 12 10 9 15 15 H 1.48497 * 109.46989 * 59.99833 * 14 12 10 16 16 H 1.48501 * 109.47217 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46909 * 300.00113 * 14 12 10 18 18 C 1.46499 * 119.99755 * 175.20361 * 9 7 4 19 19 C 1.50701 * 109.47165 * 272.33687 * 18 9 7 20 20 C 1.38231 * 120.00225 * 87.74735 * 19 18 9 21 21 C 1.38238 * 120.00037 * 179.97438 * 20 19 18 22 22 C 1.38239 * 119.99801 * 359.97438 * 21 20 19 23 23 C 1.38231 * 120.00168 * 0.27613 * 22 21 20 24 24 C 1.38236 * 119.99688 * 267.72940 * 19 18 9 25 25 H 1.08997 * 109.47095 * 300.00035 * 1 2 3 26 26 H 1.08997 * 109.46312 * 60.00199 * 1 2 3 27 27 H 1.08996 * 109.46719 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47331 * 239.99549 * 2 1 3 29 29 H 1.09009 * 109.46632 * 120.00109 * 2 1 3 30 30 H 1.09006 * 109.47065 * 59.99640 * 3 2 1 31 31 H 1.08999 * 109.47392 * 299.99756 * 3 2 1 32 32 H 1.08992 * 109.47467 * 194.40836 * 5 4 3 33 33 H 1.09004 * 109.47408 * 314.41515 * 5 4 3 34 34 H 1.09003 * 109.47022 * 74.40698 * 5 4 3 35 35 H 1.09001 * 109.47189 * 288.96330 * 6 4 3 36 36 H 1.09004 * 109.47195 * 48.97012 * 6 4 3 37 37 H 1.09004 * 109.46812 * 168.96661 * 6 4 3 38 38 H 0.97003 * 119.99622 * 179.97438 * 13 12 10 39 39 H 1.08998 * 109.47224 * 152.33407 * 18 9 7 40 40 H 1.09000 * 109.47350 * 32.33376 * 18 9 7 41 41 H 1.07997 * 120.00382 * 359.97438 * 20 19 18 42 42 H 1.08001 * 120.00145 * 179.97438 * 21 20 19 43 43 H 1.08003 * 119.99691 * 179.97438 * 22 21 20 44 44 H 1.07999 * 120.00079 * 179.72547 * 23 22 21 45 45 H 1.08002 * 119.99997 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0806 0.7210 -1.2483 6 6 4.0796 0.7214 1.2502 7 6 4.0724 2.8632 0.0000 8 8 3.2942 3.7816 -0.1491 9 7 5.3865 3.1134 0.1651 10 6 6.2521 2.0842 0.4317 11 1 6.2362 1.1934 -0.1787 12 6 7.1497 2.1872 1.4872 13 7 7.0563 3.1878 2.3340 14 14 8.4894 0.9033 1.7026 15 1 9.3550 0.8839 0.4962 16 1 9.3096 1.2388 2.8943 17 1 7.8690 -0.4331 1.8883 18 6 5.8898 4.4852 0.0598 19 6 6.2185 4.7906 -1.3788 20 6 5.2402 5.2836 -2.2218 21 6 5.5420 5.5642 -3.5413 22 6 6.8223 5.3524 -4.0177 23 6 7.7993 4.8546 -3.1760 24 6 7.4987 4.5782 -1.8553 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 5.1400 0.4942 -1.1294 33 1 3.5237 -0.2059 -1.3857 34 1 3.9416 1.3608 -2.1198 35 1 3.8854 1.3362 2.1291 36 1 3.5646 -0.2338 1.3539 37 1 5.1517 0.5479 1.1578 38 1 7.6828 3.2594 3.0711 39 1 6.7881 4.5904 0.6681 40 1 5.1280 5.1799 0.4138 41 1 4.2401 5.4494 -1.8496 42 1 4.7775 5.9489 -4.2001 43 1 7.0579 5.5712 -5.0487 44 1 8.7985 4.6849 -3.5493 45 1 8.2630 4.1929 -1.1967 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144115591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:15 Heat of formation + Delta-G solvation = -21.866395 kcal Electronic energy + Delta-G solvation = -24370.716794 eV Core-core repulsion = 21159.757208 eV Total energy + Delta-G solvation = -3210.959586 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.47706 -38.34872 -35.90943 -34.80927 -32.24952 -31.83566 -30.34396 -30.26963 -26.55395 -26.34368 -25.36789 -24.82991 -22.54561 -21.90212 -20.83769 -19.66236 -18.36958 -17.02528 -16.06989 -15.43901 -14.85669 -14.79041 -14.57568 -14.40630 -14.19789 -13.94093 -13.45085 -13.15347 -12.81353 -12.74084 -12.59241 -12.08165 -11.97493 -11.76922 -11.52462 -11.44838 -11.32803 -11.20547 -11.02884 -10.74137 -10.70900 -10.54886 -10.39204 -10.30724 -10.19801 -10.11570 -9.80844 -9.72247 -8.93227 -8.42378 -8.32398 -8.00074 -7.32635 -6.35435 -4.15424 1.95286 2.00511 3.10203 3.17987 3.18869 3.95249 4.10401 4.36191 4.87203 4.96797 5.32706 5.38414 5.42920 5.45555 5.48433 5.58474 5.77283 5.79877 5.89457 5.92130 6.11136 6.11786 6.14861 6.19482 6.24367 6.29978 6.37846 6.44516 6.47883 6.60898 6.61830 6.63094 6.74877 6.77279 6.86329 6.96122 7.04305 7.07387 7.08788 7.17849 7.42767 7.46212 7.50711 7.63983 8.08135 8.36257 9.06556 9.52619 9.97424 10.67722 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011267 B = 0.007593 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.552042 B = 3686.877726 C = 5376.149463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.090 4.090 4 C -0.060 4.060 5 C -0.139 4.139 6 C -0.143 4.143 7 C 0.497 3.503 8 O -0.601 6.601 9 N -0.435 5.435 10 C -0.329 4.329 11 H 0.091 0.909 12 C 0.047 3.953 13 N -0.864 5.864 14 Si 0.905 3.095 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.152 3.848 19 C -0.077 4.077 20 C -0.106 4.106 21 C -0.132 4.132 22 C -0.136 4.136 23 C -0.132 4.132 24 C -0.099 4.099 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.038 0.962 37 H 0.098 0.902 38 H 0.269 0.731 39 H 0.103 0.897 40 H 0.062 0.938 41 H 0.124 0.876 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 -2.906 -5.966 6.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.128 4.128 4 C -0.063 4.063 5 C -0.196 4.196 6 C -0.200 4.200 7 C 0.286 3.714 8 O -0.486 6.486 9 N -0.153 5.153 10 C -0.457 4.457 11 H 0.108 0.892 12 C -0.160 4.160 13 N -0.500 5.500 14 Si 0.731 3.269 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.195 1.195 18 C 0.029 3.971 19 C -0.078 4.078 20 C -0.124 4.124 21 C -0.150 4.150 22 C -0.154 4.154 23 C -0.150 4.150 24 C -0.117 4.117 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.080 0.920 41 H 0.142 0.858 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.285 -2.360 -5.820 6.683 hybrid contribution 0.836 -0.598 0.150 1.039 sum -1.449 -2.957 -5.670 6.557 Atomic orbital electron populations 1.21764 0.96612 1.00730 1.01600 1.21734 0.94993 0.97902 1.02043 1.21352 0.93971 0.95241 1.02281 1.20343 0.94726 0.94012 0.97223 1.21937 1.02125 0.99296 0.96290 1.22142 1.04463 0.97770 0.95601 1.20500 0.82516 0.89962 0.78385 1.90485 1.56021 1.46726 1.55414 1.43160 1.04472 1.05715 1.61958 1.19356 1.15939 0.97848 1.12581 0.89191 1.25503 0.98872 0.97137 0.94446 1.69841 1.36052 1.30476 1.13617 0.86349 0.81213 0.81277 0.78031 1.19764 1.20886 1.19483 1.20288 1.01395 0.85634 0.89821 1.20699 0.93009 0.95951 0.98186 1.21287 0.99563 0.98281 0.93286 1.21051 0.96374 1.01711 0.95883 1.20957 0.93796 1.01661 0.99007 1.21043 0.98814 1.00896 0.94241 1.21119 0.96809 0.98578 0.95217 0.92983 0.93066 0.93384 0.91967 0.91694 0.92199 0.92120 0.91089 0.92698 0.93637 0.93464 0.94342 0.88374 0.92025 0.87889 0.91962 0.85803 0.87073 0.87194 0.86988 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.13 -1.86 5.29 -26.73 -0.14 -2.00 16 3 C -0.09 -1.62 3.60 -26.73 -0.10 -1.72 16 4 C -0.06 -1.19 0.52 -155.66 -0.08 -1.27 16 5 C -0.14 -2.50 8.26 37.16 0.31 -2.19 16 6 C -0.14 -2.80 7.65 37.16 0.28 -2.52 16 7 C 0.50 11.80 6.38 -10.98 -0.07 11.73 16 8 O -0.60 -15.50 14.90 5.55 0.08 -15.41 16 9 N -0.44 -10.41 2.42 -116.10 -0.28 -10.69 16 10 C -0.33 -7.72 5.61 -14.94 -0.08 -7.81 16 11 H 0.09 2.05 4.47 -52.49 -0.23 1.81 16 12 C 0.05 1.10 5.02 -17.47 -0.09 1.02 16 13 N -0.86 -21.86 11.65 55.50 0.65 -21.21 16 14 Si 0.91 18.57 29.56 -169.99 -5.03 13.55 16 15 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 16 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 17 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 18 C 0.15 3.55 5.09 -5.19 -0.03 3.53 16 19 C -0.08 -1.61 5.45 -104.62 -0.57 -2.18 16 20 C -0.11 -2.09 9.70 -39.58 -0.38 -2.48 16 21 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 22 C -0.14 -2.15 10.05 -39.58 -0.40 -2.55 16 23 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 24 C -0.10 -1.89 9.69 -39.58 -0.38 -2.28 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.85 6.14 -51.93 -0.32 0.53 16 29 H 0.06 0.92 6.20 -51.92 -0.32 0.60 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.14 8.01 -51.93 -0.42 0.72 16 32 H 0.07 1.31 5.38 -51.93 -0.28 1.03 16 33 H 0.05 0.84 5.79 -51.93 -0.30 0.53 16 34 H 0.04 0.84 8.05 -51.93 -0.42 0.42 16 35 H 0.05 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.04 0.64 5.91 -51.93 -0.31 0.33 16 37 H 0.10 2.05 4.74 -51.93 -0.25 1.81 16 38 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 39 H 0.10 2.53 5.96 -51.93 -0.31 2.22 16 40 H 0.06 1.53 7.39 -51.93 -0.38 1.15 16 41 H 0.12 2.59 7.39 -52.49 -0.39 2.20 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 44 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 348.82 15.07 5.26 5.26 Total: -1.00 -26.70 348.82 -8.34 -35.04 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -6.86 Total: 10.92 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -2.16 Total: -17.44 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.37 Total: -31.90 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.08 Total: -15.41 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -26.70 -8.34 -35.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144115591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.176 kcal (2) G-P(sol) polarization free energy of solvation -26.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds