Wall clock time and date at job start Tue Mar 31 2020 06:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47356 * 2 1 4 4 C 1.53000 * 109.47447 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46936 * 60.00008 * 4 3 2 6 6 C 1.52999 * 109.47050 * 300.00230 * 4 3 2 7 7 C 1.50695 * 109.47133 * 179.97438 * 4 3 2 8 8 O 1.21292 * 120.00420 * 351.88912 * 7 4 3 9 9 N 1.34784 * 119.99604 * 171.88742 * 7 4 3 10 10 C 1.37099 * 120.00207 * 355.20053 * 9 7 4 11 11 H 1.08001 * 119.99752 * 49.53573 * 10 9 7 12 12 C 1.38940 * 119.99941 * 229.53895 * 10 9 7 13 13 N 1.31414 * 120.00163 * 8.79241 * 12 10 9 14 14 Si 1.86807 * 119.99967 * 188.79588 * 12 10 9 15 15 H 1.48497 * 109.46989 * 59.99833 * 14 12 10 16 16 H 1.48501 * 109.47217 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46909 * 300.00113 * 14 12 10 18 18 C 1.46499 * 119.99755 * 175.20361 * 9 7 4 19 19 C 1.50701 * 109.47165 * 272.33687 * 18 9 7 20 20 C 1.38231 * 120.00225 * 87.74735 * 19 18 9 21 21 C 1.38238 * 120.00037 * 179.97438 * 20 19 18 22 22 C 1.38239 * 119.99801 * 359.97438 * 21 20 19 23 23 C 1.38231 * 120.00168 * 0.27613 * 22 21 20 24 24 C 1.38236 * 119.99688 * 267.72940 * 19 18 9 25 25 H 1.08997 * 109.47095 * 300.00035 * 1 2 3 26 26 H 1.08997 * 109.46312 * 60.00199 * 1 2 3 27 27 H 1.08996 * 109.46719 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47331 * 239.99549 * 2 1 3 29 29 H 1.09009 * 109.46632 * 120.00109 * 2 1 3 30 30 H 1.09006 * 109.47065 * 59.99640 * 3 2 1 31 31 H 1.08999 * 109.47392 * 299.99756 * 3 2 1 32 32 H 1.08992 * 109.47467 * 194.40836 * 5 4 3 33 33 H 1.09004 * 109.47408 * 314.41515 * 5 4 3 34 34 H 1.09003 * 109.47022 * 74.40698 * 5 4 3 35 35 H 1.09001 * 109.47189 * 288.96330 * 6 4 3 36 36 H 1.09004 * 109.47195 * 48.97012 * 6 4 3 37 37 H 1.09004 * 109.46812 * 168.96661 * 6 4 3 38 38 H 0.97003 * 119.99622 * 179.97438 * 13 12 10 39 39 H 1.08998 * 109.47224 * 152.33407 * 18 9 7 40 40 H 1.09000 * 109.47350 * 32.33376 * 18 9 7 41 41 H 1.07997 * 120.00382 * 359.97438 * 20 19 18 42 42 H 1.08001 * 120.00145 * 179.97438 * 21 20 19 43 43 H 1.08003 * 119.99691 * 179.97438 * 22 21 20 44 44 H 1.07999 * 120.00079 * 179.72547 * 23 22 21 45 45 H 1.08002 * 119.99997 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0806 0.7210 -1.2483 6 6 4.0796 0.7214 1.2502 7 6 4.0724 2.8632 0.0000 8 8 3.2942 3.7816 -0.1491 9 7 5.3865 3.1134 0.1651 10 6 6.2521 2.0842 0.4317 11 1 6.2362 1.1934 -0.1787 12 6 7.1497 2.1872 1.4872 13 7 7.0563 3.1878 2.3340 14 14 8.4894 0.9033 1.7026 15 1 9.3550 0.8839 0.4962 16 1 9.3096 1.2388 2.8943 17 1 7.8690 -0.4331 1.8883 18 6 5.8898 4.4852 0.0598 19 6 6.2185 4.7906 -1.3788 20 6 5.2402 5.2836 -2.2218 21 6 5.5420 5.5642 -3.5413 22 6 6.8223 5.3524 -4.0177 23 6 7.7993 4.8546 -3.1760 24 6 7.4987 4.5782 -1.8553 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 5.1400 0.4942 -1.1294 33 1 3.5237 -0.2059 -1.3857 34 1 3.9416 1.3608 -2.1198 35 1 3.8854 1.3362 2.1291 36 1 3.5646 -0.2338 1.3539 37 1 5.1517 0.5479 1.1578 38 1 7.6828 3.2594 3.0711 39 1 6.7881 4.5904 0.6681 40 1 5.1280 5.1799 0.4138 41 1 4.2401 5.4494 -1.8496 42 1 4.7775 5.9489 -4.2001 43 1 7.0579 5.5712 -5.0487 44 1 8.7985 4.6849 -3.5493 45 1 8.2630 4.1929 -1.1967 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144115591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:15 Heat of formation + Delta-G solvation = -33.517680 kcal Electronic energy + Delta-G solvation = -24371.222032 eV Core-core repulsion = 21159.757208 eV Total energy + Delta-G solvation = -3211.464823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.21390 -39.82902 -37.45086 -36.69408 -33.71696 -33.50768 -31.90579 -31.69831 -28.11590 -27.84375 -26.95164 -26.63174 -23.96376 -23.33937 -22.28290 -21.30448 -20.06503 -18.73519 -17.58590 -17.15686 -16.67170 -16.20651 -16.08399 -15.94551 -15.72022 -15.52583 -14.97192 -14.73028 -14.26446 -14.20061 -13.95609 -13.56637 -13.51001 -13.26919 -13.06216 -13.03452 -12.88779 -12.78389 -12.60815 -12.29296 -12.26171 -12.10150 -11.90837 -11.76313 -11.73308 -11.62504 -11.31173 -11.16418 -10.75033 -10.18955 -9.75212 -9.54707 -9.21715 -8.20112 -6.05453 0.51086 0.56979 1.46860 1.49864 1.56782 2.13266 2.36856 2.83556 3.13006 3.25021 3.95551 4.04904 4.05815 4.12011 4.15827 4.23861 4.35948 4.41684 4.43204 4.49051 4.57481 4.73465 4.81233 4.84683 4.88644 4.90644 4.98272 5.00420 5.08599 5.15295 5.20246 5.22587 5.26505 5.28914 5.34015 5.37714 5.51354 5.56664 5.64486 5.65615 5.69819 5.80562 5.92605 6.19418 6.24339 6.48719 7.19654 7.65775 8.11833 8.84023 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011267 B = 0.007593 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.552042 B = 3686.877726 C = 5376.149463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.060 4.060 5 C -0.130 4.130 6 C -0.133 4.133 7 C 0.478 3.522 8 O -0.635 6.635 9 N -0.442 5.442 10 C -0.330 4.330 11 H 0.102 0.898 12 C 0.007 3.993 13 N -0.902 5.902 14 Si 0.966 3.034 15 H -0.265 1.265 16 H -0.290 1.290 17 H -0.256 1.256 18 C 0.159 3.841 19 C -0.099 4.099 20 C -0.125 4.125 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.113 4.113 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.033 0.967 35 H 0.016 0.984 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.268 0.732 39 H 0.085 0.915 40 H 0.030 0.970 41 H 0.099 0.901 42 H 0.139 0.861 43 H 0.154 0.846 44 H 0.147 0.853 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.317 -5.181 -8.531 10.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.122 4.122 4 C -0.063 4.063 5 C -0.187 4.187 6 C -0.189 4.189 7 C 0.268 3.732 8 O -0.522 6.522 9 N -0.159 5.159 10 C -0.458 4.458 11 H 0.119 0.881 12 C -0.195 4.195 13 N -0.539 5.539 14 Si 0.790 3.210 15 H -0.190 1.190 16 H -0.216 1.216 17 H -0.180 1.180 18 C 0.036 3.964 19 C -0.101 4.101 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.141 4.141 24 C -0.132 4.132 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.052 0.948 35 H 0.035 0.965 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.049 0.951 41 H 0.117 0.883 42 H 0.157 0.843 43 H 0.172 0.828 44 H 0.165 0.835 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.572 -4.647 -8.397 9.725 hybrid contribution 0.596 0.218 0.911 1.110 sum -0.976 -4.429 -7.486 8.753 Atomic orbital electron populations 1.21749 0.95066 1.02245 1.01474 1.21693 0.96367 0.94885 1.02973 1.21299 0.92581 0.97779 1.00550 1.20422 0.95949 0.91507 0.98428 1.21871 1.02169 1.00203 0.94470 1.22025 1.04077 0.98729 0.94116 1.21366 0.82260 0.91674 0.77869 1.90448 1.56688 1.48204 1.56890 1.43396 1.04931 1.05925 1.61634 1.19641 1.15592 0.97917 1.12617 0.88090 1.26239 1.00633 0.98711 0.93930 1.69987 1.37048 1.32479 1.14360 0.85396 0.78537 0.79390 0.77705 1.19002 1.21599 1.18044 1.20053 0.99260 0.85282 0.91852 1.20457 0.94522 0.98344 0.96732 1.21170 0.98297 0.99976 0.94967 1.21365 0.98037 1.00585 0.94580 1.21435 0.92513 0.99308 1.00801 1.21418 1.00716 0.99218 0.92758 1.21123 0.95644 0.99591 0.96798 0.93455 0.93007 0.90984 0.90442 0.91097 0.94479 0.93417 0.91634 0.89199 0.94760 0.96452 0.90803 0.89546 0.92280 0.89727 0.95144 0.88319 0.84271 0.82796 0.83509 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.91 71.98 0.71 -2.63 16 2 C -0.12 -3.22 5.29 30.59 0.16 -3.06 16 3 C -0.08 -3.02 3.60 30.59 0.11 -2.91 16 4 C -0.06 -2.40 0.52 -52.93 -0.03 -2.43 16 5 C -0.13 -4.48 8.26 71.98 0.59 -3.89 16 6 C -0.13 -5.17 7.65 71.98 0.55 -4.62 16 7 C 0.48 23.84 6.38 87.65 0.56 24.40 16 8 O -0.63 -35.02 14.90 -3.07 -0.05 -35.07 16 9 N -0.44 -22.24 2.42 -639.60 -1.55 -23.79 16 10 C -0.33 -15.83 5.61 84.04 0.47 -15.36 16 11 H 0.10 4.57 4.47 -2.91 -0.01 4.55 16 12 C 0.01 0.36 5.02 84.92 0.43 0.79 16 13 N -0.90 -47.71 11.65 21.66 0.25 -47.45 16 14 Si 0.97 37.96 29.56 68.60 2.03 39.99 16 15 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 16 H -0.29 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 18 C 0.16 8.03 5.09 85.63 0.44 8.47 16 19 C -0.10 -4.34 5.45 -19.87 -0.11 -4.45 16 20 C -0.13 -5.13 9.70 22.27 0.22 -4.92 16 21 C -0.13 -4.11 10.05 22.27 0.22 -3.89 16 22 C -0.12 -3.41 10.05 22.27 0.22 -3.19 16 23 C -0.12 -3.74 10.05 22.27 0.22 -3.52 16 24 C -0.11 -4.34 9.69 22.27 0.22 -4.12 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.83 6.14 -2.39 -0.01 1.81 16 29 H 0.07 1.80 6.20 -2.38 -0.01 1.78 16 30 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.05 1.81 8.01 -2.39 -0.02 1.79 16 32 H 0.06 2.32 5.38 -2.39 -0.01 2.31 16 33 H 0.09 2.44 5.79 -2.38 -0.01 2.43 16 34 H 0.03 1.24 8.05 -2.39 -0.02 1.22 16 35 H 0.02 0.73 8.10 -2.39 -0.02 0.72 16 36 H 0.07 2.32 5.91 -2.39 -0.01 2.30 16 37 H 0.09 3.57 4.74 -2.38 -0.01 3.56 16 38 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 39 H 0.08 4.51 5.96 -2.39 -0.01 4.49 16 40 H 0.03 1.66 7.39 -2.39 -0.02 1.64 16 41 H 0.10 4.46 7.39 -2.91 -0.02 4.44 16 42 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 43 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 44 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 45 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -62.18 348.82 6.65 -55.53 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: 0.97 Total: 36.12 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 4.99 Total: -25.33 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -1.30 Total: -71.24 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -0.05 Total: -35.07 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -62.18 6.65 -55.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144115591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.014 kcal (2) G-P(sol) polarization free energy of solvation -62.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds