Wall clock time and date at job start Tue Mar 31 2020 05:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38755 * 120.03049 * 2 1 4 4 O 1.35900 * 120.05291 * 359.97438 * 3 2 1 5 5 C 1.38707 * 119.89000 * 180.02562 * 3 2 1 6 6 C 1.38171 * 119.94258 * 0.02562 * 5 3 2 7 7 C 1.38238 * 120.05437 * 359.74015 * 6 5 3 8 8 C 1.38124 * 120.02611 * 180.02562 * 2 1 3 9 9 C 1.50696 * 119.97256 * 359.96708 * 8 2 1 10 10 N 1.46904 * 109.46911 * 296.15413 * 9 8 2 11 11 C 1.46900 * 110.99963 * 158.23730 * 10 9 8 12 12 C 1.50702 * 109.46867 * 202.68077 * 11 10 9 13 13 H 1.07995 * 120.00326 * 5.56883 * 12 11 10 14 14 C 1.37875 * 119.99709 * 185.56934 * 12 11 10 15 15 N 1.31518 * 120.00231 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00104 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46880 * 90.00716 * 16 14 12 18 18 H 1.48500 * 109.47398 * 210.00080 * 16 14 12 19 19 H 1.48494 * 109.47178 * 330.00503 * 16 14 12 20 20 C 1.46904 * 111.00127 * 282.18989 * 10 9 8 21 21 C 1.55231 * 110.58120 * 180.71832 * 20 10 9 22 22 C 1.54886 * 102.58845 * 203.33849 * 21 20 10 23 23 C 1.54270 * 104.31113 * 37.93578 * 22 21 20 24 24 C 1.53875 * 106.59738 * 336.32202 * 23 22 21 25 25 H 1.09000 * 109.47501 * 274.64144 * 1 2 3 26 26 H 1.09005 * 109.47117 * 34.63824 * 1 2 3 27 27 H 1.09002 * 109.47342 * 154.63283 * 1 2 3 28 28 H 0.96701 * 114.00113 * 90.00168 * 4 3 2 29 29 H 1.07999 * 120.03058 * 180.02562 * 5 3 2 30 30 H 1.08001 * 119.96593 * 180.02562 * 6 5 3 31 31 H 1.08010 * 119.94141 * 180.25400 * 7 6 5 32 32 H 1.09006 * 109.47487 * 176.15984 * 9 8 2 33 33 H 1.08995 * 109.47671 * 56.15333 * 9 8 2 34 34 H 1.08997 * 109.47027 * 322.67713 * 11 10 9 35 35 H 1.08997 * 109.47352 * 82.68199 * 11 10 9 36 36 H 0.97000 * 120.00453 * 180.02562 * 15 14 12 37 37 H 1.09002 * 110.43495 * 303.30654 * 20 10 9 38 38 H 1.09004 * 110.89790 * 85.05006 * 21 20 10 39 39 H 1.09001 * 110.76708 * 321.57213 * 21 20 10 40 40 H 1.08999 * 110.48816 * 279.19083 * 22 21 20 41 41 H 1.09007 * 110.48578 * 156.67764 * 22 21 20 42 42 H 1.09000 * 110.03070 * 95.60847 * 23 22 21 43 43 H 1.09001 * 110.03234 * 216.99024 * 23 22 21 44 44 H 1.08996 * 110.02793 * 119.29010 * 24 23 22 45 45 H 1.09002 * 110.02708 * 240.66638 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.2013 0.0000 4 8 1.5236 2.3792 -0.0005 5 6 3.5884 1.1979 -0.0005 6 6 4.2752 -0.0011 -0.0016 7 6 3.5810 -1.1965 0.0033 8 6 2.1981 -1.1959 -0.0005 9 6 1.4446 -2.5009 -0.0004 10 7 0.6717 -2.6199 1.2432 11 6 -0.4392 -3.5677 1.0840 12 6 -1.5030 -3.2716 2.1095 13 1 -1.4101 -2.4070 2.7498 14 6 -2.5950 -4.1047 2.2303 15 7 -3.5237 -3.8462 3.1249 16 14 -2.7561 -5.6000 1.1223 17 1 -2.1062 -6.7679 1.7694 18 1 -4.1936 -5.8960 0.8962 19 1 -2.0967 -5.3248 -0.1795 20 6 1.5368 -3.0066 2.3658 21 6 0.7075 -3.1470 3.6706 22 6 1.7760 -2.9429 4.7732 23 6 2.7010 -1.8446 4.2092 24 6 2.5489 -1.8851 2.6785 25 1 -0.3634 0.0832 1.0243 26 1 -0.3633 0.8456 -0.5841 27 1 -0.3634 -0.9286 -0.4403 28 1 1.3271 2.7203 0.8827 29 1 4.1312 2.1316 -0.0001 30 1 5.3552 -0.0042 -0.0016 31 1 4.1197 -2.1327 0.0066 32 1 2.1509 -3.3283 -0.0697 33 1 0.7668 -2.5293 -0.8535 34 1 -0.8611 -3.4683 0.0838 35 1 -0.0724 -4.5845 1.2242 36 1 -4.2917 -4.4324 3.2102 37 1 2.0566 -3.9382 2.1424 38 1 0.2621 -4.1392 3.7433 39 1 -0.0584 -2.3735 3.7268 40 1 2.3344 -3.8642 4.9385 41 1 1.3089 -2.6094 5.6999 42 1 2.3971 -0.8692 4.5890 43 1 3.7350 -2.0479 4.4879 44 1 2.1713 -0.9293 2.3155 45 1 3.5094 -2.1077 2.2137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144116525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:15 Heat of formation + Delta-G solvation = -34.814969 kcal Electronic energy + Delta-G solvation = -24486.376824 eV Core-core repulsion = 21274.855747 eV Total energy + Delta-G solvation = -3211.521078 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.19019 -39.61698 -37.58316 -36.32127 -34.67098 -33.41149 -31.76286 -29.86154 -28.96038 -28.52045 -27.57437 -25.56950 -23.01412 -22.77837 -21.60234 -21.22649 -20.58224 -18.97778 -18.61099 -17.26456 -16.84764 -16.71991 -16.31660 -16.01367 -15.87475 -15.60242 -14.90434 -14.51744 -14.34213 -14.16563 -14.08700 -13.93794 -13.70014 -13.43655 -13.10688 -12.92880 -12.75956 -12.69458 -12.46210 -12.11801 -12.03108 -11.92227 -11.86084 -11.64666 -11.61214 -11.46060 -11.19632 -11.09297 -10.91642 -10.66906 -9.39515 -9.29585 -8.95396 -8.18118 -6.15790 0.42729 0.51823 1.33075 1.35928 1.44318 2.37937 2.74346 3.14516 3.26393 3.46146 3.81577 3.94843 3.96844 4.07834 4.21366 4.22916 4.37066 4.39551 4.55037 4.62327 4.67233 4.75914 4.79680 4.85969 4.91962 4.92379 4.96407 4.97726 4.99733 5.04075 5.14792 5.18471 5.20248 5.31876 5.48775 5.53998 5.56120 5.57880 5.62440 5.64011 5.72996 5.84507 6.03946 6.13133 6.54403 6.72131 6.90697 6.93020 7.43895 8.97233 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016526 B = 0.005836 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.918790 B = 4796.545239 C = 5458.287251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.099 4.099 3 C 0.087 3.913 4 O -0.509 6.509 5 C -0.149 4.149 6 C -0.107 4.107 7 C -0.122 4.122 8 C -0.058 4.058 9 C 0.088 3.912 10 N -0.519 5.519 11 C 0.171 3.829 12 C -0.483 4.483 13 H 0.054 0.946 14 C 0.010 3.990 15 N -0.948 5.948 16 Si 0.929 3.071 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.254 1.254 20 C 0.090 3.910 21 C -0.096 4.096 22 C -0.125 4.125 23 C -0.114 4.114 24 C -0.103 4.103 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.402 0.598 29 H 0.142 0.858 30 H 0.152 0.848 31 H 0.136 0.864 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.021 0.979 35 H -0.016 1.016 36 H 0.261 0.739 37 H 0.031 0.969 38 H 0.035 0.965 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.875 6.587 -4.163 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C 0.042 3.958 4 O -0.321 6.321 5 C -0.168 4.168 6 C -0.125 4.125 7 C -0.140 4.140 8 C -0.059 4.059 9 C -0.040 4.040 10 N -0.242 5.242 11 C 0.044 3.956 12 C -0.521 4.521 13 H 0.073 0.927 14 C -0.187 4.187 15 N -0.590 5.590 16 Si 0.755 3.245 17 H -0.200 1.200 18 H -0.214 1.214 19 H -0.178 1.178 20 C -0.018 4.018 21 C -0.134 4.134 22 C -0.163 4.163 23 C -0.152 4.152 24 C -0.140 4.140 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.260 0.740 29 H 0.160 0.840 30 H 0.170 0.830 31 H 0.154 0.846 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.039 0.961 35 H 0.001 0.999 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.532 6.920 -4.615 19.405 hybrid contribution -0.868 -1.601 0.123 1.825 sum 16.664 5.319 -4.491 18.060 Atomic orbital electron populations 1.20399 0.91350 1.01287 1.01449 1.20087 0.96452 0.92554 1.00862 1.18444 0.90496 0.84583 1.02234 1.84720 1.76823 1.35661 1.34916 1.21545 0.92702 0.99883 1.02631 1.21189 1.00945 0.90998 0.99358 1.21199 0.92603 0.99346 1.00857 1.19558 0.93804 0.93467 0.99064 1.21082 0.95936 0.94036 0.92931 1.62002 1.09481 1.49631 1.03135 1.19986 0.89860 0.89510 0.96234 1.21296 1.03345 1.10137 1.17364 0.92743 1.25637 0.95709 1.00590 0.96738 1.70027 1.11995 1.40094 1.36907 0.85984 0.77246 0.80612 0.80698 1.19956 1.21373 1.17800 1.22512 0.92615 0.95818 0.90869 1.22528 0.96717 1.00465 0.93707 1.22398 0.96869 0.99236 0.97826 1.22074 0.99704 0.98374 0.95031 1.22316 0.97568 0.98335 0.95811 0.92582 0.92320 0.92711 0.73995 0.84039 0.83007 0.84649 0.93406 0.91050 0.96086 0.99865 0.92947 0.95071 0.94592 0.92605 0.91327 0.92222 0.92326 0.90212 0.91840 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.99 8.79 71.23 0.63 -2.36 16 2 C -0.10 -2.97 5.24 -19.77 -0.10 -3.07 16 3 C 0.09 2.28 6.68 22.51 0.15 2.43 16 4 O -0.51 -12.46 12.63 -92.43 -1.17 -13.63 16 5 C -0.15 -3.19 9.99 22.37 0.22 -2.97 16 6 C -0.11 -2.06 10.04 22.25 0.22 -1.83 16 7 C -0.12 -2.73 7.36 22.28 0.16 -2.56 16 8 C -0.06 -1.65 3.18 -19.88 -0.06 -1.71 16 9 C 0.09 2.82 4.30 85.56 0.37 3.18 16 10 N -0.52 -20.08 3.36 -873.07 -2.94 -23.02 16 11 C 0.17 7.89 3.70 85.56 0.32 8.21 16 12 C -0.48 -26.49 7.48 25.60 0.19 -26.30 16 13 H 0.05 3.33 6.01 -2.91 -0.02 3.31 16 14 C 0.01 0.55 5.47 84.65 0.46 1.01 16 15 N -0.95 -58.41 13.96 21.45 0.30 -58.11 16 16 Si 0.93 43.98 27.36 68.60 1.88 45.86 16 17 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 19 H -0.25 -11.27 6.70 99.48 0.67 -10.60 16 20 C 0.09 3.21 2.41 46.11 0.11 3.33 16 21 C -0.10 -3.89 4.53 32.00 0.14 -3.75 16 22 C -0.13 -3.87 6.82 31.67 0.22 -3.66 16 23 C -0.11 -3.01 6.80 31.32 0.21 -2.79 16 24 C -0.10 -2.96 4.53 31.32 0.14 -2.82 16 25 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.06 1.85 7.68 -2.38 -0.02 1.84 16 27 H 0.05 2.01 6.25 -2.39 -0.01 2.00 16 28 H 0.40 6.63 9.06 -74.06 -0.67 5.96 16 29 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 30 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 31 H 0.14 2.53 7.93 -2.91 -0.02 2.51 16 32 H 0.05 1.39 7.63 -2.38 -0.02 1.37 16 33 H 0.07 2.38 6.67 -2.39 -0.02 2.36 16 34 H 0.02 0.98 6.95 -2.39 -0.02 0.96 16 35 H -0.02 -0.76 7.07 -2.39 -0.02 -0.78 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.03 1.10 8.04 -2.39 -0.02 1.08 16 38 H 0.04 1.64 7.64 -2.38 -0.02 1.62 16 39 H 0.06 2.67 5.87 -2.39 -0.01 2.66 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.06 1.81 8.14 -2.38 -0.02 1.80 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.06 2.02 6.03 -2.39 -0.01 2.00 16 45 H 0.07 1.81 6.51 -2.39 -0.02 1.80 16 Total: -1.00 -65.27 340.03 1.73 -63.54 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.27 Total: 21.04 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 3.39 Total: -35.67 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -2.64 Total: -81.13 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -1.17 Total: -13.63 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Total: -65.27 1.73 -63.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144116525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.721 kcal (2) G-P(sol) polarization free energy of solvation -65.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds