Wall clock time and date at job start Tue Mar 31 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46826 * 2 1 4 4 C 1.38141 * 120.02996 * 264.99811 * 3 2 1 5 5 C 1.38274 * 120.05552 * 179.70225 * 4 3 2 6 6 C 1.50696 * 119.94301 * 180.27916 * 5 4 3 7 7 N 1.46904 * 109.47167 * 90.00503 * 6 5 4 8 8 C 1.47476 * 110.99569 * 265.97022 * 7 6 5 9 9 C 1.53519 * 87.93114 * 221.29366 * 8 7 6 10 10 C 1.50697 * 114.34501 * 139.68209 * 9 8 7 11 11 H 1.07999 * 120.00228 * 266.08160 * 10 9 8 12 12 C 1.37877 * 119.99809 * 86.07638 * 10 9 8 13 13 N 1.31517 * 120.00305 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46882 * 60.00313 * 14 12 10 16 16 H 1.48499 * 109.46921 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46981 * 300.00067 * 14 12 10 18 18 C 1.47480 * 110.99925 * 169.99941 * 7 6 5 19 19 C 1.38261 * 120.10990 * 0.30244 * 5 4 3 20 20 C 1.38149 * 120.05703 * 359.97438 * 19 5 4 21 21 C 1.50701 * 120.02698 * 180.02562 * 20 19 5 22 22 C 1.52999 * 109.46938 * 264.99598 * 21 20 19 23 23 C 1.38729 * 119.94477 * 359.97438 * 20 19 5 24 24 O 1.35897 * 120.05793 * 180.02562 * 23 20 19 25 25 H 1.08997 * 109.46776 * 299.99435 * 1 2 3 26 26 H 1.08997 * 109.47389 * 59.99665 * 1 2 3 27 27 H 1.09003 * 109.46713 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47226 * 240.00378 * 2 1 3 29 29 H 1.08997 * 109.47389 * 120.00335 * 2 1 3 30 30 H 1.08002 * 119.97550 * 359.97438 * 4 3 2 31 31 H 1.08996 * 109.46864 * 210.00120 * 6 5 4 32 32 H 1.09002 * 109.47297 * 330.00370 * 6 5 4 33 33 H 1.09001 * 113.48018 * 336.06095 * 8 7 6 34 34 H 1.08995 * 113.47971 * 106.53045 * 8 7 6 35 35 H 1.08997 * 114.17241 * 272.38203 * 9 8 7 36 36 H 0.96999 * 120.00321 * 179.97438 * 13 12 10 37 37 H 1.09004 * 113.47298 * 253.46994 * 18 7 6 38 38 H 1.08990 * 113.47578 * 23.93313 * 18 7 6 39 39 H 1.07996 * 119.97484 * 179.97438 * 19 5 4 40 40 H 1.09001 * 109.47305 * 24.99306 * 21 20 19 41 41 H 1.08998 * 109.47307 * 144.99736 * 21 20 19 42 42 H 1.09005 * 109.47334 * 300.00146 * 22 21 20 43 43 H 1.09003 * 109.47435 * 59.99820 * 22 21 20 44 44 H 1.08998 * 109.47312 * 180.02562 * 22 21 20 45 45 H 0.96705 * 113.99994 * 90.00144 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3610 2.0379 -1.1914 5 6 2.8161 3.3436 -1.1926 6 6 3.1680 4.0164 -2.4943 7 7 1.9792 4.6891 -3.0349 8 6 1.2662 3.8178 -3.9874 9 6 1.0643 5.0513 -4.8788 10 6 1.2375 4.7879 -6.3525 11 1 2.1956 4.9550 -6.8220 12 6 0.1727 4.3334 -7.1013 13 7 -0.9942 4.1303 -6.5297 14 14 0.3876 4.0062 -8.9279 15 1 1.4332 2.9705 -9.1256 16 1 -0.8971 3.5289 -9.4997 17 1 0.7972 5.2598 -9.6105 18 6 2.3339 5.5528 -4.1765 19 6 2.9492 4.0328 -0.0014 20 6 2.6272 3.4183 1.1933 21 6 2.7720 4.1703 2.4912 22 6 4.1323 3.8527 3.1155 23 6 2.1694 2.1087 1.1970 24 8 1.8515 1.5021 2.3708 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.2583 1.5015 -2.1232 31 1 3.9545 4.7511 -2.3225 32 1 3.5179 3.2691 -3.2066 33 1 1.9018 3.0556 -4.4383 34 1 0.3357 3.4113 -3.5914 35 1 0.1687 5.6277 -4.6470 36 1 -1.7434 3.8110 -7.0566 37 1 2.3083 6.6166 -3.9406 38 1 3.2544 5.2536 -4.6777 39 1 3.3052 5.0524 -0.0048 40 1 2.7009 5.2412 2.3006 41 1 1.9789 3.8696 3.1758 42 1 4.2035 2.7818 3.3061 43 1 4.9254 4.1534 2.4309 44 1 4.2369 4.3963 4.0545 45 1 0.9285 1.6168 2.6355 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144138162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:44 Heat of formation + Delta-G solvation = -8.486353 kcal Electronic energy + Delta-G solvation = -22977.912111 eV Core-core repulsion = 19767.532728 eV Total energy + Delta-G solvation = -3210.379383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.22556 -38.87298 -36.63272 -35.01257 -33.42235 -32.51188 -30.53443 -29.01195 -27.91710 -25.40312 -24.79652 -24.04289 -23.71982 -22.54677 -20.31439 -20.08272 -18.62540 -18.15920 -16.65687 -16.33238 -15.61486 -15.02694 -14.88358 -14.41164 -14.23399 -14.06834 -13.89470 -13.78408 -13.41716 -13.07245 -12.89650 -12.72399 -12.30535 -12.01008 -11.94970 -11.74463 -11.51416 -11.42272 -11.30029 -11.14600 -11.02069 -10.95294 -10.76453 -10.57436 -10.28594 -10.12722 -9.74297 -9.30194 -8.95968 -8.49037 -8.46152 -8.18394 -7.98510 -6.06611 -4.11448 1.38536 1.48565 3.28823 3.34130 3.36129 3.68876 4.30659 4.39006 4.69349 4.74573 4.85426 5.10122 5.12551 5.20821 5.29856 5.33017 5.36475 5.40401 5.48676 5.53538 5.57490 5.70709 5.81871 5.83045 5.87836 5.92949 5.96118 6.05985 6.10895 6.17738 6.23262 6.29234 6.32925 6.45696 6.57881 6.63696 6.66430 6.71343 6.84065 6.97710 7.13748 7.19392 7.69450 7.71023 7.89688 8.06186 8.35932 8.91593 9.53574 11.02836 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020999 B = 0.003664 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.104738 B = 7640.650200 C = 8558.568342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.103 4.103 4 C -0.098 4.098 5 C -0.058 4.058 6 C 0.055 3.945 7 N -0.478 5.478 8 C 0.007 3.993 9 C 0.042 3.958 10 C -0.518 4.518 11 H 0.057 0.943 12 C 0.068 3.932 13 N -0.886 5.886 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.006 4.006 19 C -0.094 4.094 20 C -0.107 4.107 21 C -0.075 4.075 22 C -0.143 4.143 23 C 0.095 3.905 24 O -0.494 6.494 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.262 0.738 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.122 0.878 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 -4.593 16.837 18.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.104 4.104 4 C -0.117 4.117 5 C -0.058 4.058 6 C -0.073 4.073 7 N -0.200 5.200 8 C -0.122 4.122 9 C 0.023 3.977 10 C -0.556 4.556 11 H 0.075 0.925 12 C -0.135 4.135 13 N -0.523 5.523 14 Si 0.718 3.282 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.135 4.135 19 C -0.112 4.112 20 C -0.107 4.107 21 C -0.112 4.112 22 C -0.200 4.200 23 C 0.051 3.949 24 O -0.303 6.303 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.140 0.860 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.140 0.860 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.195 -4.561 17.404 19.028 hybrid contribution 0.043 -0.518 -1.656 1.736 sum 6.237 -5.079 15.748 17.684 Atomic orbital electron populations 1.21703 0.94822 1.01547 1.02141 1.20411 0.96077 0.92485 1.02753 1.20105 1.00933 0.96960 0.92365 1.20856 0.99041 0.94727 0.97073 1.19801 0.97690 0.93426 0.94891 1.21627 0.94960 0.97478 0.93247 1.68928 1.15134 1.13188 1.22723 1.24099 0.97542 0.97974 0.92592 1.20082 0.92515 0.91758 0.93349 1.20998 0.96592 1.45017 0.93006 0.92483 1.25015 0.95109 0.95099 0.98319 1.69958 1.01161 1.45049 1.36120 0.86683 0.77357 0.78724 0.85389 1.20240 1.21229 1.20138 1.24025 1.00668 0.97327 0.91468 1.20746 1.00251 0.99433 0.90791 1.20096 1.01658 0.93409 0.95579 1.20345 0.98277 0.99117 0.93473 1.21704 0.96376 1.01997 0.99936 1.17981 1.01872 0.90528 0.84566 1.84786 1.32512 1.75761 1.37248 0.93118 0.92165 0.92491 0.91201 0.90763 0.85995 0.91120 0.93266 0.92932 0.91931 0.91834 0.92800 0.91963 0.92797 0.86008 0.91292 0.91345 0.92298 0.92822 0.92782 0.76461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.89 37.16 0.37 -1.19 16 2 C -0.08 -0.93 5.79 -27.88 -0.16 -1.09 16 3 C -0.10 -1.42 5.15 -104.47 -0.54 -1.96 16 4 C -0.10 -1.51 9.33 -39.60 -0.37 -1.88 16 5 C -0.06 -0.91 5.47 -104.60 -0.57 -1.48 16 6 C 0.06 0.93 4.94 -4.98 -0.02 0.91 16 7 N -0.48 -9.61 6.32 -246.09 -1.55 -11.17 16 8 C 0.01 0.15 7.28 -7.54 -0.05 0.10 16 9 C 0.04 1.05 3.76 -91.24 -0.34 0.71 16 10 C -0.52 -14.00 8.83 -34.44 -0.30 -14.30 16 11 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 12 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 13 N -0.89 -25.41 13.26 55.43 0.74 -24.68 16 14 Si 0.89 20.91 29.54 -169.99 -5.02 15.88 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C -0.01 -0.13 7.25 -7.54 -0.05 -0.19 16 19 C -0.09 -1.35 9.33 -39.61 -0.37 -1.72 16 20 C -0.11 -1.41 5.15 -104.47 -0.54 -1.95 16 21 C -0.07 -0.80 5.79 -27.88 -0.16 -0.96 16 22 C -0.14 -1.41 9.89 37.16 0.37 -1.04 16 23 C 0.10 1.25 6.65 -39.22 -0.26 0.99 16 24 O -0.49 -5.48 11.77 -19.42 -0.23 -5.71 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 29 H 0.07 0.82 7.68 -51.93 -0.40 0.43 16 30 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 31 H 0.07 1.09 8.02 -51.93 -0.42 0.68 16 32 H 0.05 0.84 7.24 -51.93 -0.38 0.46 16 33 H 0.05 1.20 7.38 -51.93 -0.38 0.81 16 34 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.06 1.75 8.11 -51.93 -0.42 1.33 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 1.09 7.87 -51.93 -0.41 0.68 16 39 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 41 H 0.07 0.66 7.69 -51.93 -0.40 0.26 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.38 2.80 9.06 45.56 0.41 3.21 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -29.25 368.70 -10.63 -39.88 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.00 Total: 3.53 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -3.11 Total: -23.30 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: -0.82 Total: -35.84 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.23 Total: -5.71 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.25 -10.63 -39.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144138162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.393 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds