Wall clock time and date at job start Tue Mar 31 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46826 * 2 1 4 4 C 1.38141 * 120.02996 * 264.99811 * 3 2 1 5 5 C 1.38274 * 120.05552 * 179.70225 * 4 3 2 6 6 C 1.50696 * 119.94301 * 180.27916 * 5 4 3 7 7 N 1.46904 * 109.47167 * 90.00503 * 6 5 4 8 8 C 1.47476 * 110.99569 * 265.97022 * 7 6 5 9 9 C 1.53519 * 87.93114 * 221.29366 * 8 7 6 10 10 C 1.50697 * 114.34501 * 139.68209 * 9 8 7 11 11 H 1.07999 * 120.00228 * 266.08160 * 10 9 8 12 12 C 1.37877 * 119.99809 * 86.07638 * 10 9 8 13 13 N 1.31517 * 120.00305 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46882 * 60.00313 * 14 12 10 16 16 H 1.48499 * 109.46921 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46981 * 300.00067 * 14 12 10 18 18 C 1.47480 * 110.99925 * 169.99941 * 7 6 5 19 19 C 1.38261 * 120.10990 * 0.30244 * 5 4 3 20 20 C 1.38149 * 120.05703 * 359.97438 * 19 5 4 21 21 C 1.50701 * 120.02698 * 180.02562 * 20 19 5 22 22 C 1.52999 * 109.46938 * 264.99598 * 21 20 19 23 23 C 1.38729 * 119.94477 * 359.97438 * 20 19 5 24 24 O 1.35897 * 120.05793 * 180.02562 * 23 20 19 25 25 H 1.08997 * 109.46776 * 299.99435 * 1 2 3 26 26 H 1.08997 * 109.47389 * 59.99665 * 1 2 3 27 27 H 1.09003 * 109.46713 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47226 * 240.00378 * 2 1 3 29 29 H 1.08997 * 109.47389 * 120.00335 * 2 1 3 30 30 H 1.08002 * 119.97550 * 359.97438 * 4 3 2 31 31 H 1.08996 * 109.46864 * 210.00120 * 6 5 4 32 32 H 1.09002 * 109.47297 * 330.00370 * 6 5 4 33 33 H 1.09001 * 113.48018 * 336.06095 * 8 7 6 34 34 H 1.08995 * 113.47971 * 106.53045 * 8 7 6 35 35 H 1.08997 * 114.17241 * 272.38203 * 9 8 7 36 36 H 0.96999 * 120.00321 * 179.97438 * 13 12 10 37 37 H 1.09004 * 113.47298 * 253.46994 * 18 7 6 38 38 H 1.08990 * 113.47578 * 23.93313 * 18 7 6 39 39 H 1.07996 * 119.97484 * 179.97438 * 19 5 4 40 40 H 1.09001 * 109.47305 * 24.99306 * 21 20 19 41 41 H 1.08998 * 109.47307 * 144.99736 * 21 20 19 42 42 H 1.09005 * 109.47334 * 300.00146 * 22 21 20 43 43 H 1.09003 * 109.47435 * 59.99820 * 22 21 20 44 44 H 1.08998 * 109.47312 * 180.02562 * 22 21 20 45 45 H 0.96705 * 113.99994 * 90.00144 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3610 2.0379 -1.1914 5 6 2.8161 3.3436 -1.1926 6 6 3.1680 4.0164 -2.4943 7 7 1.9792 4.6891 -3.0349 8 6 1.2662 3.8178 -3.9874 9 6 1.0643 5.0513 -4.8788 10 6 1.2375 4.7879 -6.3525 11 1 2.1956 4.9550 -6.8220 12 6 0.1727 4.3334 -7.1013 13 7 -0.9942 4.1303 -6.5297 14 14 0.3876 4.0062 -8.9279 15 1 1.4332 2.9705 -9.1256 16 1 -0.8971 3.5289 -9.4997 17 1 0.7972 5.2598 -9.6105 18 6 2.3339 5.5528 -4.1765 19 6 2.9492 4.0328 -0.0014 20 6 2.6272 3.4183 1.1933 21 6 2.7720 4.1703 2.4912 22 6 4.1323 3.8527 3.1155 23 6 2.1694 2.1087 1.1970 24 8 1.8515 1.5021 2.3708 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.2583 1.5015 -2.1232 31 1 3.9545 4.7511 -2.3225 32 1 3.5179 3.2691 -3.2066 33 1 1.9018 3.0556 -4.4383 34 1 0.3357 3.4113 -3.5914 35 1 0.1687 5.6277 -4.6470 36 1 -1.7434 3.8110 -7.0566 37 1 2.3083 6.6166 -3.9406 38 1 3.2544 5.2536 -4.6777 39 1 3.3052 5.0524 -0.0048 40 1 2.7009 5.2412 2.3006 41 1 1.9789 3.8696 3.1758 42 1 4.2035 2.7818 3.3061 43 1 4.9254 4.1534 2.4309 44 1 4.2369 4.3963 4.0545 45 1 0.9285 1.6168 2.6355 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144138162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:44 Heat of formation + Delta-G solvation = -26.277664 kcal Electronic energy + Delta-G solvation = -22978.683600 eV Core-core repulsion = 19767.532728 eV Total energy + Delta-G solvation = -3211.150873 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.35449 -40.47503 -37.67568 -35.94263 -34.92062 -34.07311 -31.82183 -29.99857 -29.43815 -27.11775 -26.54437 -25.03538 -24.70769 -24.09429 -21.31363 -21.23654 -20.47382 -19.14651 -18.62967 -17.41541 -16.75471 -16.70066 -16.28675 -15.95069 -15.72865 -15.19305 -15.01857 -14.86167 -14.41071 -14.30212 -14.04481 -13.81957 -13.68319 -13.49308 -13.23016 -13.11009 -12.95046 -12.78691 -12.53201 -12.43112 -12.30821 -12.24727 -12.02660 -11.84549 -11.76684 -11.47260 -11.18714 -11.10373 -10.87862 -10.50684 -9.73265 -9.55131 -9.27552 -8.15493 -6.27328 0.29458 0.40048 1.42802 1.44074 1.51983 2.41752 2.59501 3.13507 3.35430 3.44581 3.71470 3.75869 3.82544 4.13151 4.22127 4.25976 4.32513 4.41578 4.44981 4.48271 4.49909 4.55411 4.57108 4.65721 4.72596 4.75231 4.86655 4.94517 4.97057 5.01171 5.02268 5.08984 5.14024 5.18699 5.21969 5.34445 5.39974 5.41656 5.54267 5.60534 5.61676 5.74901 5.84099 5.94596 6.28566 6.36624 6.82056 6.86792 7.41329 8.94019 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020999 B = 0.003664 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.104738 B = 7640.650200 C = 8558.568342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.077 4.077 3 C -0.111 4.111 4 C -0.115 4.115 5 C -0.078 4.078 6 C 0.059 3.941 7 N -0.475 5.475 8 C 0.022 3.978 9 C 0.022 3.978 10 C -0.533 4.533 11 H 0.061 0.939 12 C 0.015 3.985 13 N -0.922 5.922 14 Si 0.958 3.042 15 H -0.269 1.269 16 H -0.285 1.285 17 H -0.268 1.268 18 C 0.009 3.991 19 C -0.100 4.100 20 C -0.109 4.109 21 C -0.074 4.074 22 C -0.139 4.139 23 C 0.100 3.900 24 O -0.493 6.493 25 H 0.061 0.939 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.029 0.971 36 H 0.263 0.737 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.132 0.868 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.072 0.928 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.137 -4.767 18.090 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 C -0.111 4.111 4 C -0.134 4.134 5 C -0.078 4.078 6 C -0.069 4.069 7 N -0.197 5.197 8 C -0.107 4.107 9 C 0.003 3.997 10 C -0.571 4.571 11 H 0.079 0.921 12 C -0.184 4.184 13 N -0.560 5.560 14 Si 0.783 3.217 15 H -0.194 1.194 16 H -0.211 1.211 17 H -0.193 1.193 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.110 4.110 21 C -0.111 4.111 22 C -0.196 4.196 23 C 0.055 3.945 24 O -0.305 6.305 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.149 0.851 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 7.229 -4.729 18.671 20.573 hybrid contribution -0.285 -0.477 -1.918 1.997 sum 6.944 -5.206 16.753 18.868 Atomic orbital electron populations 1.21682 0.94172 1.02487 1.01569 1.20429 0.96547 0.91309 1.03150 1.20338 1.00635 0.97986 0.92158 1.20889 1.00106 0.94972 0.97458 1.19758 0.99403 0.93833 0.94818 1.21622 0.93877 0.97727 0.93694 1.68853 1.16732 1.12470 1.21665 1.23785 0.96989 0.97208 0.92718 1.20032 0.93259 0.93139 0.93320 1.21354 0.96798 1.44683 0.94223 0.92126 1.25836 0.94772 0.94927 1.02879 1.70092 1.01966 1.46164 1.37800 0.85623 0.77370 0.78871 0.79882 1.19409 1.21078 1.19305 1.23858 0.98841 0.98245 0.91014 1.20895 1.00347 0.99893 0.90768 1.20398 1.00650 0.93624 0.96307 1.20417 0.99141 0.99230 0.92335 1.21666 0.95687 1.01562 1.00678 1.18047 1.01064 0.90483 0.84934 1.84737 1.34219 1.75447 1.36086 0.92023 0.94363 0.90821 0.91345 0.89768 0.87045 0.89214 0.93631 0.93236 0.94142 0.95296 0.92848 0.90570 0.91793 0.85056 0.90551 0.90129 0.93296 0.93242 0.90896 0.74211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.89 71.98 0.71 -2.20 16 2 C -0.08 -1.72 5.79 29.85 0.17 -1.55 16 3 C -0.11 -2.98 5.15 -19.77 -0.10 -3.08 16 4 C -0.12 -3.58 9.33 22.26 0.21 -3.38 16 5 C -0.08 -2.44 5.47 -19.85 -0.11 -2.55 16 6 C 0.06 1.96 4.94 85.55 0.42 2.38 16 7 N -0.48 -19.16 6.32 -932.50 -5.89 -25.05 16 8 C 0.02 1.05 7.28 83.58 0.61 1.66 16 9 C 0.02 1.11 3.76 -11.19 -0.04 1.07 16 10 C -0.53 -29.15 8.83 25.60 0.23 -28.92 16 11 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 12 C 0.02 0.85 5.46 84.65 0.46 1.31 16 13 N -0.92 -54.26 13.26 21.45 0.28 -53.97 16 14 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 16 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 C 0.01 0.37 7.25 83.58 0.61 0.98 16 19 C -0.10 -2.79 9.33 22.25 0.21 -2.58 16 20 C -0.11 -2.69 5.15 -19.77 -0.10 -2.79 16 21 C -0.07 -1.39 5.79 29.85 0.17 -1.21 16 22 C -0.14 -2.39 9.89 71.98 0.71 -1.68 16 23 C 0.10 2.46 6.65 22.51 0.15 2.61 16 24 O -0.49 -9.68 11.77 -92.39 -1.09 -10.77 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.52 8.05 -2.39 -0.02 1.50 16 29 H 0.08 1.71 7.68 -2.39 -0.02 1.69 16 30 H 0.11 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.09 2.64 8.02 -2.39 -0.02 2.62 16 32 H 0.05 1.55 7.24 -2.39 -0.02 1.53 16 33 H 0.05 2.32 7.38 -2.39 -0.02 2.30 16 34 H 0.04 2.03 8.14 -2.39 -0.02 2.02 16 35 H 0.03 1.66 8.11 -2.39 -0.02 1.64 16 36 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 37 H 0.08 2.94 8.14 -2.38 -0.02 2.92 16 38 H 0.06 2.52 7.87 -2.39 -0.02 2.50 16 39 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 40 H 0.08 1.33 8.05 -2.39 -0.02 1.31 16 41 H 0.08 1.32 7.69 -2.39 -0.02 1.30 16 42 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.40 4.69 9.06 -74.05 -0.67 4.02 16 Total: -1.00 -63.15 368.70 -0.07 -63.22 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.29 Total: 21.39 kcal Atomic # 6 Polarization: -44.24 SS G_CDS: 4.31 Total: -39.93 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -5.61 Total: -79.02 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -1.09 Total: -10.77 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -63.15 -0.07 -63.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144138162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.947 kcal (2) G-P(sol) polarization free energy of solvation -63.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds