Wall clock time and date at job start Tue Mar 31 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 110.52318 * 2 1 4 4 O 1.21283 * 119.99803 * 237.21343 * 3 2 1 5 5 N 1.34777 * 119.99675 * 57.49219 * 3 2 1 6 6 C 1.46497 * 119.99525 * 179.72583 * 5 3 2 7 7 H 1.09009 * 109.41524 * 35.14130 * 6 5 3 8 8 C 1.52963 * 109.41342 * 154.99797 * 6 5 3 9 9 C 1.53230 * 109.40785 * 183.70462 * 8 6 5 10 10 C 1.51269 * 108.53143 * 305.37174 * 9 8 6 11 11 C 1.37883 * 120.84797 * 231.31969 * 10 9 8 12 12 N 1.31510 * 119.99824 * 0.02562 * 11 10 9 13 13 Si 1.86798 * 119.99903 * 180.02562 * 11 10 9 14 14 H 1.48494 * 109.47212 * 60.00546 * 13 11 10 15 15 H 1.48500 * 109.46839 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47082 * 300.00053 * 13 11 10 17 17 C 1.51266 * 118.30400 * 51.35077 * 10 9 8 18 18 C 1.52961 * 109.41533 * 275.34887 * 6 5 3 19 19 C 1.54836 * 110.70975 * 122.87869 * 2 1 3 20 20 C 1.56192 * 103.68579 * 118.61041 * 19 2 1 21 21 H 1.09005 * 116.94059 * 196.46788 * 20 19 2 22 22 C 1.53357 * 104.07814 * 66.64530 * 20 19 2 23 23 C 1.31794 * 108.42049 * 289.91051 * 22 20 19 24 24 C 1.53353 * 108.43028 * 0.02562 * 23 22 20 25 25 H 1.08994 * 116.33263 * 199.39764 * 24 23 22 26 26 C 1.57258 * 100.39721 * 323.67252 * 20 19 2 27 27 H 1.09003 * 109.46933 * 60.69773 * 1 2 3 28 28 H 1.08999 * 109.47381 * 180.70126 * 1 2 3 29 29 H 1.09004 * 109.46676 * 300.70127 * 1 2 3 30 30 H 0.97000 * 119.99894 * 359.71837 * 5 3 2 31 31 H 1.09000 * 109.48075 * 303.68394 * 8 6 5 32 32 H 1.09000 * 109.48096 * 63.71869 * 8 6 5 33 33 H 1.09002 * 109.62361 * 65.08258 * 9 8 6 34 34 H 1.09001 * 109.62739 * 185.65590 * 9 8 6 35 35 H 0.97000 * 119.99872 * 180.02562 * 12 11 10 36 36 H 1.08999 * 109.62834 * 68.36104 * 17 10 9 37 37 H 1.08996 * 109.62983 * 188.93189 * 17 10 9 38 38 H 1.08994 * 109.47974 * 296.27711 * 18 6 5 39 39 H 1.08999 * 109.47970 * 56.31795 * 18 6 5 40 40 H 1.09003 * 110.58123 * 237.15799 * 19 2 1 41 41 H 1.09000 * 110.58569 * 0.05442 * 19 2 1 42 42 H 1.08000 * 125.79153 * 109.91611 * 22 20 19 43 43 H 1.08004 * 125.78120 * 179.97438 * 23 22 20 44 44 H 1.08994 * 112.52585 * 300.92277 * 26 20 19 45 45 H 1.09004 * 112.52299 * 173.05262 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0583 1.4114 0.0000 4 8 2.8036 1.7798 -0.8830 5 7 1.7071 2.2623 0.9844 6 6 2.2255 3.6325 0.9876 7 1 2.3126 3.9894 -0.0387 8 6 1.2649 4.5377 1.7607 9 6 1.7588 5.9863 1.6857 10 6 3.1892 6.0325 2.1755 11 6 3.5750 6.9311 3.1476 12 7 2.6947 7.7619 3.6616 13 14 5.3480 6.9681 3.7345 14 1 6.2423 7.2732 2.5890 15 1 5.5027 8.0150 4.7763 16 1 5.7082 5.6454 4.3053 17 6 4.1858 5.0683 1.5711 18 6 3.6039 3.6530 1.6503 19 6 2.0775 -0.7862 1.2163 20 6 2.8879 -1.9532 0.5676 21 1 3.1394 -2.7969 1.2103 22 6 4.0628 -1.2517 -0.1249 23 6 3.5967 -0.5826 -1.1602 24 6 2.0790 -0.7914 -1.2290 25 1 1.6052 -0.5828 -2.1882 26 6 1.9867 -2.2637 -0.6832 27 1 -0.3633 0.5030 -0.8962 28 1 -0.3634 -1.0276 0.0126 29 1 -0.3633 0.5247 0.8837 30 1 1.1110 1.9675 1.6905 31 1 0.2693 4.4699 1.3223 32 1 1.2258 4.2204 2.8028 33 1 1.7136 6.3355 0.6541 34 1 1.1349 6.6190 2.3171 35 1 2.9661 8.3943 4.3452 36 1 4.3652 5.3326 0.5290 37 1 5.1213 5.1113 2.1288 38 1 3.5095 3.3568 2.6949 39 1 4.2660 2.9583 1.1336 40 1 2.7307 -0.1545 1.8184 41 1 1.2586 -1.1775 1.8199 42 1 5.0968 -1.2982 0.1836 43 1 4.1840 0.0126 -1.8438 44 1 0.9702 -2.5432 -0.4063 45 1 2.4432 -2.9886 -1.3572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144284629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:00 Heat of formation + Delta-G solvation = -22.776519 kcal Electronic energy + Delta-G solvation = -24135.642701 eV Core-core repulsion = 20924.643650 eV Total energy + Delta-G solvation = -3210.999052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.45301 -38.69523 -36.55888 -33.89860 -32.82869 -31.27556 -29.66371 -29.30374 -28.15292 -27.07264 -25.91217 -22.90414 -21.60253 -21.37795 -20.43484 -19.58666 -19.08263 -18.08132 -16.82017 -16.27527 -15.87533 -15.75226 -14.60087 -14.56442 -14.40178 -13.92109 -13.25863 -12.89667 -12.82535 -12.63757 -12.44259 -12.23745 -12.17853 -12.04291 -11.86534 -11.57210 -11.39461 -11.26636 -11.16391 -11.00202 -10.85485 -10.77707 -10.64718 -10.31900 -10.17935 -10.01293 -9.73892 -9.38871 -8.96909 -8.87887 -8.63983 -8.47774 -8.28371 -6.11090 -4.01546 2.38367 3.01560 3.29317 3.35763 3.38155 3.58202 4.28711 4.38809 4.39728 4.50414 4.94431 5.00660 5.07719 5.09418 5.16323 5.18723 5.25060 5.51531 5.57004 5.59439 5.68956 5.71667 5.78110 5.87151 5.89576 5.92829 6.00088 6.11451 6.20011 6.21635 6.48237 6.50577 6.59738 6.71897 6.81324 6.89811 6.97006 7.02679 7.06842 7.27029 7.42934 7.63998 7.71032 7.77931 8.00519 8.37644 8.65865 8.95262 9.54179 10.98648 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027776 B = 0.004203 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.806749 B = 6660.956547 C = 7125.716352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 C 0.522 3.478 4 O -0.536 6.536 5 N -0.723 5.723 6 C 0.155 3.845 7 H 0.076 0.924 8 C -0.114 4.114 9 C 0.013 3.987 10 C -0.489 4.489 11 C 0.077 3.923 12 N -0.891 5.891 13 Si 0.891 3.109 14 H -0.274 1.274 15 H -0.292 1.292 16 H -0.275 1.275 17 C -0.008 4.008 18 C -0.112 4.112 19 C -0.108 4.108 20 C -0.073 4.073 21 H 0.100 0.900 22 C -0.202 4.202 23 C -0.118 4.118 24 C -0.052 4.052 25 H 0.101 0.899 26 C -0.121 4.121 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.392 0.608 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.006 0.994 34 H 0.060 0.940 35 H 0.265 0.735 36 H 0.020 0.980 37 H 0.024 0.976 38 H 0.049 0.951 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.122 0.878 43 H 0.127 0.873 44 H 0.075 0.925 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.196 -19.309 -4.994 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.089 4.089 3 C 0.308 3.692 4 O -0.413 6.413 5 N -0.372 5.372 6 C 0.052 3.948 7 H 0.094 0.906 8 C -0.152 4.152 9 C -0.025 4.025 10 C -0.508 4.508 11 C -0.126 4.126 12 N -0.529 5.529 13 Si 0.719 3.281 14 H -0.200 1.200 15 H -0.218 1.218 16 H -0.200 1.200 17 C -0.047 4.047 18 C -0.151 4.151 19 C -0.146 4.146 20 C -0.091 4.091 21 H 0.118 0.882 22 C -0.220 4.220 23 C -0.136 4.136 24 C -0.070 4.070 25 H 0.119 0.881 26 C -0.158 4.158 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.225 0.775 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.024 0.976 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.139 0.861 43 H 0.145 0.855 44 H 0.093 0.907 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.697 -18.845 -5.483 19.971 hybrid contribution 0.780 0.111 0.887 1.186 sum -2.918 -18.733 -4.596 19.508 Atomic orbital electron populations 1.21820 0.92393 1.02517 1.02597 1.22045 0.96617 0.92775 0.97429 1.20255 0.80727 0.86499 0.81748 1.90655 1.36060 1.77442 1.37114 1.46397 1.49956 1.13725 1.27166 1.21009 0.94357 0.78855 1.00539 0.90554 1.21924 0.95457 0.99340 0.98496 1.19335 0.96250 0.90304 0.96574 1.20035 0.93959 1.16522 1.20288 1.24825 0.97207 0.94943 0.95604 1.69817 1.34023 1.21082 1.27933 0.86657 0.85425 0.77510 0.78494 1.19980 1.21848 1.20049 1.19591 0.95660 0.92185 0.97218 1.21878 0.95123 0.99135 0.98928 1.22795 0.99516 0.96602 0.95697 1.22836 0.93721 0.96329 0.96224 0.88232 1.23932 0.98100 1.01917 0.98054 1.23977 0.95054 0.96251 0.98278 1.22775 0.94181 0.93678 0.96407 0.88093 1.24093 0.99521 0.95832 0.96401 0.92000 0.91480 0.91975 0.77505 0.94673 0.92802 0.97583 0.92100 0.92528 0.96198 0.95712 0.93182 0.94569 0.90912 0.90565 0.86059 0.85470 0.90683 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.30 37.16 0.31 -0.97 16 2 C -0.09 -1.01 0.57 -153.01 -0.09 -1.10 16 3 C 0.52 8.38 5.92 -10.98 -0.07 8.32 16 4 O -0.54 -10.55 13.84 5.55 0.08 -10.48 16 5 N -0.72 -11.59 4.97 -53.84 -0.27 -11.86 16 6 C 0.16 3.07 2.35 -67.97 -0.16 2.91 16 7 H 0.08 1.68 7.58 -51.92 -0.39 1.29 16 8 C -0.11 -2.33 5.40 -26.63 -0.14 -2.47 16 9 C 0.01 0.33 5.97 -27.49 -0.16 0.16 16 10 C -0.49 -12.94 5.51 -98.92 -0.55 -13.48 16 11 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 12 N -0.89 -25.53 12.73 55.43 0.71 -24.83 16 13 Si 0.89 21.53 26.80 -169.99 -4.56 16.98 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 C -0.01 -0.20 5.59 -27.49 -0.15 -0.36 16 18 C -0.11 -2.40 5.50 -26.63 -0.15 -2.54 16 19 C -0.11 -1.15 5.54 -24.05 -0.13 -1.28 16 20 C -0.07 -0.73 5.26 -86.41 -0.45 -1.18 16 21 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 22 C -0.20 -2.47 10.14 -34.86 -0.35 -2.82 16 23 C -0.12 -1.58 7.69 -34.87 -0.27 -1.85 16 24 C -0.05 -0.60 4.15 -86.42 -0.36 -0.96 16 25 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 26 C -0.12 -1.10 6.61 -22.08 -0.15 -1.24 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.50 6.97 -51.93 -0.36 0.14 16 29 H 0.06 0.55 7.49 -51.93 -0.39 0.16 16 30 H 0.39 5.27 7.92 -40.82 -0.32 4.95 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.59 5.17 -51.93 -0.27 0.32 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 41 H 0.08 0.65 7.75 -51.93 -0.40 0.25 16 42 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.13 1.88 7.83 -52.48 -0.41 1.47 16 44 H 0.07 0.57 6.99 -51.93 -0.36 0.21 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -29.83 339.87 -9.35 -39.18 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -7.46 Total: 2.73 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -2.97 Total: -16.85 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.44 Total: -36.68 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.56 Total: 16.98 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.83 -9.35 -39.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144284629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.408 kcal (2) G-P(sol) polarization free energy of solvation -29.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds