Wall clock time and date at job start Tue Mar 31 2020 05:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 110.52318 * 2 1 4 4 O 1.21283 * 119.99803 * 237.21343 * 3 2 1 5 5 N 1.34777 * 119.99675 * 57.49219 * 3 2 1 6 6 C 1.46497 * 119.99525 * 179.72583 * 5 3 2 7 7 H 1.09009 * 109.41524 * 35.14130 * 6 5 3 8 8 C 1.52963 * 109.41342 * 154.99797 * 6 5 3 9 9 C 1.53230 * 109.40785 * 183.70462 * 8 6 5 10 10 C 1.51269 * 108.53143 * 305.37174 * 9 8 6 11 11 C 1.37883 * 120.84797 * 231.31969 * 10 9 8 12 12 N 1.31510 * 119.99824 * 0.02562 * 11 10 9 13 13 Si 1.86798 * 119.99903 * 180.02562 * 11 10 9 14 14 H 1.48494 * 109.47212 * 60.00546 * 13 11 10 15 15 H 1.48500 * 109.46839 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47082 * 300.00053 * 13 11 10 17 17 C 1.51266 * 118.30400 * 51.35077 * 10 9 8 18 18 C 1.52961 * 109.41533 * 275.34887 * 6 5 3 19 19 C 1.54836 * 110.70975 * 122.87869 * 2 1 3 20 20 C 1.56192 * 103.68579 * 118.61041 * 19 2 1 21 21 H 1.09005 * 116.94059 * 196.46788 * 20 19 2 22 22 C 1.53357 * 104.07814 * 66.64530 * 20 19 2 23 23 C 1.31794 * 108.42049 * 289.91051 * 22 20 19 24 24 C 1.53353 * 108.43028 * 0.02562 * 23 22 20 25 25 H 1.08994 * 116.33263 * 199.39764 * 24 23 22 26 26 C 1.57258 * 100.39721 * 323.67252 * 20 19 2 27 27 H 1.09003 * 109.46933 * 60.69773 * 1 2 3 28 28 H 1.08999 * 109.47381 * 180.70126 * 1 2 3 29 29 H 1.09004 * 109.46676 * 300.70127 * 1 2 3 30 30 H 0.97000 * 119.99894 * 359.71837 * 5 3 2 31 31 H 1.09000 * 109.48075 * 303.68394 * 8 6 5 32 32 H 1.09000 * 109.48096 * 63.71869 * 8 6 5 33 33 H 1.09002 * 109.62361 * 65.08258 * 9 8 6 34 34 H 1.09001 * 109.62739 * 185.65590 * 9 8 6 35 35 H 0.97000 * 119.99872 * 180.02562 * 12 11 10 36 36 H 1.08999 * 109.62834 * 68.36104 * 17 10 9 37 37 H 1.08996 * 109.62983 * 188.93189 * 17 10 9 38 38 H 1.08994 * 109.47974 * 296.27711 * 18 6 5 39 39 H 1.08999 * 109.47970 * 56.31795 * 18 6 5 40 40 H 1.09003 * 110.58123 * 237.15799 * 19 2 1 41 41 H 1.09000 * 110.58569 * 0.05442 * 19 2 1 42 42 H 1.08000 * 125.79153 * 109.91611 * 22 20 19 43 43 H 1.08004 * 125.78120 * 179.97438 * 23 22 20 44 44 H 1.08994 * 112.52585 * 300.92277 * 26 20 19 45 45 H 1.09004 * 112.52299 * 173.05262 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0583 1.4114 0.0000 4 8 2.8036 1.7798 -0.8830 5 7 1.7071 2.2623 0.9844 6 6 2.2255 3.6325 0.9876 7 1 2.3126 3.9894 -0.0387 8 6 1.2649 4.5377 1.7607 9 6 1.7588 5.9863 1.6857 10 6 3.1892 6.0325 2.1755 11 6 3.5750 6.9311 3.1476 12 7 2.6947 7.7619 3.6616 13 14 5.3480 6.9681 3.7345 14 1 6.2423 7.2732 2.5890 15 1 5.5027 8.0150 4.7763 16 1 5.7082 5.6454 4.3053 17 6 4.1858 5.0683 1.5711 18 6 3.6039 3.6530 1.6503 19 6 2.0775 -0.7862 1.2163 20 6 2.8879 -1.9532 0.5676 21 1 3.1394 -2.7969 1.2103 22 6 4.0628 -1.2517 -0.1249 23 6 3.5967 -0.5826 -1.1602 24 6 2.0790 -0.7914 -1.2290 25 1 1.6052 -0.5828 -2.1882 26 6 1.9867 -2.2637 -0.6832 27 1 -0.3633 0.5030 -0.8962 28 1 -0.3634 -1.0276 0.0126 29 1 -0.3633 0.5247 0.8837 30 1 1.1110 1.9675 1.6905 31 1 0.2693 4.4699 1.3223 32 1 1.2258 4.2204 2.8028 33 1 1.7136 6.3355 0.6541 34 1 1.1349 6.6190 2.3171 35 1 2.9661 8.3943 4.3452 36 1 4.3652 5.3326 0.5290 37 1 5.1213 5.1113 2.1288 38 1 3.5095 3.3568 2.6949 39 1 4.2660 2.9583 1.1336 40 1 2.7307 -0.1545 1.8184 41 1 1.2586 -1.1775 1.8199 42 1 5.0968 -1.2982 0.1836 43 1 4.1840 0.0126 -1.8438 44 1 0.9702 -2.5432 -0.4063 45 1 2.4432 -2.9886 -1.3572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144284629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:59 Heat of formation + Delta-G solvation = -39.649696 kcal Electronic energy + Delta-G solvation = -24136.374377 eV Core-core repulsion = 20924.643650 eV Total energy + Delta-G solvation = -3211.730727 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.42185 -40.04938 -38.22076 -35.45697 -34.14622 -32.90167 -31.51859 -30.15345 -29.30978 -28.54093 -26.73328 -24.48777 -23.38628 -22.81518 -21.42542 -21.22567 -20.22224 -19.18555 -18.11493 -17.61355 -17.18079 -17.03531 -16.45771 -15.84264 -15.77905 -15.08952 -14.81420 -14.59816 -14.22811 -14.00771 -13.73878 -13.68385 -13.34973 -13.28581 -12.99634 -12.81400 -12.70513 -12.64168 -12.57616 -12.24554 -12.09606 -12.02883 -11.93307 -11.82647 -11.63767 -11.61031 -11.20705 -10.97830 -10.75692 -10.59849 -10.45365 -9.87425 -9.65222 -8.20825 -6.14695 1.36036 1.37999 1.41282 1.45625 1.76976 2.30152 2.37621 3.07401 3.44542 3.56167 3.60762 3.96396 4.09110 4.11355 4.18765 4.21823 4.24489 4.37944 4.46077 4.49020 4.66082 4.74397 4.79744 4.81516 4.84750 4.91612 4.98129 5.02577 5.03656 5.06252 5.12485 5.15648 5.21018 5.21488 5.26431 5.32251 5.38611 5.49571 5.56025 5.64530 5.70256 5.73593 5.79484 6.05316 6.31682 6.71732 6.90095 7.39955 7.43518 8.89893 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027776 B = 0.004203 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.806749 B = 6660.956547 C = 7125.716352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.079 4.079 3 C 0.516 3.484 4 O -0.578 6.578 5 N -0.714 5.714 6 C 0.168 3.832 7 H 0.051 0.949 8 C -0.099 4.099 9 C 0.009 3.991 10 C -0.501 4.501 11 C 0.029 3.971 12 N -0.926 5.926 13 Si 0.939 3.061 14 H -0.273 1.273 15 H -0.289 1.289 16 H -0.266 1.266 17 C -0.011 4.011 18 C -0.102 4.102 19 C -0.106 4.106 20 C -0.066 4.066 21 H 0.125 0.875 22 C -0.204 4.204 23 C -0.147 4.147 24 C -0.058 4.058 25 H 0.097 0.903 26 C -0.105 4.105 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.408 0.592 31 H 0.059 0.941 32 H 0.057 0.943 33 H -0.004 1.004 34 H 0.036 0.964 35 H 0.265 0.735 36 H 0.011 0.989 37 H 0.026 0.974 38 H 0.054 0.946 39 H 0.033 0.967 40 H 0.051 0.949 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.323 -22.467 -4.076 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.082 4.082 3 C 0.304 3.696 4 O -0.458 6.458 5 N -0.364 5.364 6 C 0.064 3.936 7 H 0.069 0.931 8 C -0.138 4.138 9 C -0.029 4.029 10 C -0.520 4.520 11 C -0.170 4.170 12 N -0.565 5.565 13 Si 0.765 3.235 14 H -0.198 1.198 15 H -0.215 1.215 16 H -0.191 1.191 17 C -0.049 4.049 18 C -0.141 4.141 19 C -0.144 4.144 20 C -0.084 4.084 21 H 0.143 0.857 22 C -0.222 4.222 23 C -0.166 4.166 24 C -0.077 4.077 25 H 0.116 0.884 26 C -0.142 4.142 27 H 0.071 0.929 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.245 0.755 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.014 0.986 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.029 0.971 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.128 0.872 42 H 0.136 0.864 43 H 0.115 0.885 44 H 0.121 0.879 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.839 -22.033 -4.556 23.014 hybrid contribution 1.173 1.139 0.510 1.713 sum -3.666 -20.894 -4.045 21.596 Atomic orbital electron populations 1.21867 0.89994 1.04564 1.02690 1.22068 0.98291 0.89469 0.98363 1.21168 0.79780 0.88085 0.80580 1.90648 1.37913 1.78568 1.38669 1.46145 1.50132 1.12153 1.28010 1.20555 0.93524 0.80968 0.98591 0.93104 1.21685 0.96590 0.96418 0.99059 1.19298 0.95591 0.92849 0.95178 1.20547 0.95147 1.16427 1.19878 1.25503 1.00366 0.94869 0.96247 1.69928 1.35630 1.22090 1.28873 0.85872 0.81597 0.77882 0.78112 1.19834 1.21508 1.19093 1.19597 0.95438 0.93443 0.96418 1.21735 0.95967 0.97138 0.99276 1.22837 1.00262 0.96246 0.95036 1.22952 0.92238 0.96545 0.96710 0.85724 1.24240 0.99065 1.01292 0.97560 1.23995 0.96628 0.97089 0.98850 1.22866 0.92456 0.95862 0.96472 0.88439 1.24059 1.00861 0.93750 0.95521 0.92855 0.88466 0.91023 0.75544 0.92217 0.92400 0.98609 0.94575 0.92597 0.97068 0.95596 0.92734 0.94783 0.92980 0.87197 0.86401 0.88474 0.87937 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.30 71.98 0.60 -1.40 16 2 C -0.08 -1.66 0.57 -51.21 -0.03 -1.69 16 3 C 0.52 16.11 5.92 87.66 0.52 16.63 16 4 O -0.58 -23.27 13.84 -3.04 -0.04 -23.31 16 5 N -0.71 -21.81 4.97 -442.65 -2.20 -24.01 16 6 C 0.17 6.58 2.35 44.97 0.11 6.69 16 7 H 0.05 2.28 7.58 -2.38 -0.02 2.26 16 8 C -0.10 -3.98 5.40 30.66 0.17 -3.81 16 9 C 0.01 0.44 5.97 30.11 0.18 0.62 16 10 C -0.50 -26.78 5.51 -16.17 -0.09 -26.87 16 11 C 0.03 1.61 5.46 84.66 0.46 2.07 16 12 N -0.93 -53.98 12.73 21.45 0.27 -53.71 16 13 Si 0.94 44.22 26.80 68.60 1.84 46.06 16 14 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 15 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 C -0.01 -0.52 5.59 30.10 0.17 -0.36 16 18 C -0.10 -4.35 5.50 30.66 0.17 -4.18 16 19 C -0.11 -1.86 5.54 32.33 0.18 -1.68 16 20 C -0.07 -1.08 5.26 -8.07 -0.04 -1.12 16 21 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 22 C -0.20 -4.77 10.14 25.79 0.26 -4.50 16 23 C -0.15 -3.99 7.69 25.79 0.20 -3.79 16 24 C -0.06 -1.24 4.15 -8.07 -0.03 -1.27 16 25 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 26 C -0.10 -1.48 6.61 33.61 0.22 -1.26 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.10 0.91 6.97 -2.39 -0.02 0.89 16 29 H 0.07 0.95 7.49 -2.39 -0.02 0.93 16 30 H 0.41 9.85 7.92 -92.71 -0.73 9.11 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 34 H 0.04 1.97 7.07 -2.39 -0.02 1.95 16 35 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.03 1.22 5.17 -2.39 -0.01 1.21 16 38 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.05 1.15 7.68 -2.39 -0.02 1.13 16 41 H 0.11 1.24 7.75 -2.39 -0.02 1.22 16 42 H 0.12 2.72 8.06 -2.91 -0.02 2.70 16 43 H 0.10 3.12 7.83 -2.91 -0.02 3.09 16 44 H 0.10 0.94 6.99 -2.39 -0.02 0.93 16 45 H 0.08 1.09 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -66.87 339.87 3.14 -63.72 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.24 Total: 17.18 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 3.03 Total: -25.92 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -1.93 Total: -77.72 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.04 Total: -23.31 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.84 Total: 46.06 kcal Total: -66.87 3.14 -63.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144284629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.072 kcal (2) G-P(sol) polarization free energy of solvation -66.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds