Wall clock time and date at job start Tue Mar 31 2020 05:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47266 * 2 1 4 4 C 1.52997 * 109.47232 * 240.00097 * 2 1 3 5 5 C 1.53005 * 109.47452 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47159 * 59.99536 * 5 4 2 7 7 H 1.08996 * 109.46929 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.46684 * 60.00602 * 6 5 4 9 9 C 1.39668 * 120.00369 * 84.99713 * 8 6 5 10 10 C 1.38915 * 120.07111 * 359.72593 * 9 8 6 11 11 C 1.38106 * 119.92376 * 179.76805 * 10 9 8 12 12 C 1.38294 * 120.07284 * 0.50465 * 11 10 9 13 13 C 1.50698 * 119.92150 * 179.76555 * 12 11 10 14 14 C 1.50704 * 109.47351 * 269.97757 * 13 12 11 15 15 H 1.08000 * 119.99400 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00142 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99715 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00140 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47104 * 59.99833 * 18 16 14 20 20 H 1.48503 * 109.47467 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47003 * 299.99958 * 18 16 14 22 22 C 1.38283 * 120.14843 * 359.74992 * 12 11 10 23 23 C 1.38103 * 120.07540 * 359.97438 * 22 12 11 24 24 C 1.52997 * 109.47317 * 300.00546 * 6 5 4 25 25 C 1.53000 * 109.47060 * 59.99960 * 24 6 5 26 26 H 1.09000 * 109.47140 * 299.99752 * 1 2 3 27 27 H 1.09001 * 109.46922 * 60.00052 * 1 2 3 28 28 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 29 29 H 0.96696 * 114.00040 * 300.00240 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99992 * 4 2 1 31 31 H 1.09001 * 109.47289 * 60.00075 * 4 2 1 32 32 H 1.09000 * 109.47360 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.46935 * 300.00125 * 5 4 2 34 34 H 0.97004 * 119.99411 * 265.00023 * 8 6 5 35 35 H 1.07995 * 120.03841 * 359.97438 * 10 9 8 36 36 H 1.07996 * 119.96473 * 180.24856 * 11 10 9 37 37 H 1.08998 * 109.47415 * 29.98200 * 13 12 11 38 38 H 1.09008 * 109.46483 * 149.98126 * 13 12 11 39 39 H 0.96999 * 119.99717 * 180.02562 * 17 16 14 40 40 H 1.08003 * 119.96011 * 180.02562 * 22 12 11 41 41 H 1.07999 * 120.03487 * 179.97438 * 23 22 12 42 42 H 1.09002 * 109.47153 * 299.99641 * 24 6 5 43 43 H 1.09001 * 109.46832 * 179.97438 * 24 6 5 44 44 H 1.08992 * 109.47399 * 59.99823 * 25 24 6 45 45 H 1.09004 * 109.46724 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0806 -1.4415 -0.0003 7 1 5.1706 -1.4415 -0.0009 8 7 3.5928 -2.8229 -0.0001 9 6 4.2943 -3.8115 -0.6939 10 6 5.4517 -3.4854 -1.3895 11 6 6.1457 -4.4661 -2.0705 12 6 5.6838 -5.7697 -2.0692 13 6 6.4408 -6.8362 -2.8178 14 6 5.9241 -6.9209 -4.2310 15 1 5.1274 -6.2674 -4.5546 16 6 6.4683 -7.8325 -5.1105 17 7 7.4381 -8.6285 -4.7161 18 14 5.8282 -7.9370 -6.8623 19 1 6.0192 -6.6285 -7.5380 20 1 6.5733 -8.9889 -7.5997 21 1 4.3829 -8.2772 -6.8417 22 6 4.5291 -6.0967 -1.3822 23 6 3.8335 -5.1219 -0.6944 24 6 3.5706 -0.7203 1.2489 25 6 2.0406 -0.7209 1.2492 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7210 1.8654 -0.7650 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.9334 -1.2341 -2.1398 33 1 3.9330 0.3071 -1.2498 34 1 2.7825 -3.0510 0.4820 35 1 5.8103 -2.4667 -1.3949 36 1 7.0478 -4.2141 -2.6081 37 1 7.5016 -6.5859 -2.8333 38 1 6.3013 -7.7967 -2.3217 39 1 7.8212 -9.2697 -5.3350 40 1 4.1714 -7.1157 -1.3828 41 1 2.9315 -5.3779 -0.1584 42 1 3.9335 0.3075 1.2487 43 1 3.9340 -1.2341 2.1388 44 1 1.6777 -1.7486 1.2494 45 1 1.6773 -0.2067 2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162359897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:36 Heat of formation + Delta-G solvation = -49.080700 kcal Electronic energy + Delta-G solvation = -22982.115839 eV Core-core repulsion = 19769.976152 eV Total energy + Delta-G solvation = -3212.139686 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.22554 -38.57695 -36.33228 -33.82728 -32.67230 -31.37817 -31.10078 -30.10901 -29.48494 -26.68756 -25.78722 -23.10827 -22.82804 -22.22139 -21.19312 -20.25748 -19.16885 -17.10781 -16.68869 -16.20812 -15.86588 -15.34782 -14.91585 -14.74679 -14.27785 -14.12707 -13.84274 -13.66031 -13.48481 -12.78277 -12.72465 -12.67167 -12.54672 -12.19872 -12.18491 -12.05093 -11.70618 -11.41262 -11.31571 -11.16374 -11.02088 -10.83825 -10.58543 -10.50769 -10.40543 -10.03585 -9.91445 -9.67364 -9.37612 -8.95815 -8.34669 -8.17676 -6.69069 -5.94688 -3.99350 2.17994 2.43273 3.35905 3.39695 3.43193 3.70541 3.92252 4.38572 4.45375 4.47010 4.62197 4.72196 4.86148 4.98047 5.08852 5.16337 5.27895 5.33187 5.37578 5.43547 5.47099 5.58092 5.60884 5.63806 5.73565 5.81056 5.94557 5.97784 5.99159 6.09334 6.14449 6.16827 6.26618 6.38628 6.54268 6.77444 6.92759 7.35764 7.36289 7.39899 7.51256 7.66111 7.92411 8.00597 8.02823 8.13536 8.44448 9.06351 9.63867 11.13479 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.003140 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.857089 B = 8915.401396 C = 9319.448778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.130 3.870 3 O -0.558 6.558 4 C -0.139 4.139 5 C -0.131 4.131 6 C 0.157 3.843 7 H 0.077 0.923 8 N -0.750 5.750 9 C 0.185 3.815 10 C -0.196 4.196 11 C -0.081 4.081 12 C -0.086 4.086 13 C 0.054 3.946 14 C -0.508 4.508 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.080 4.080 23 C -0.196 4.196 24 C -0.122 4.122 25 C -0.102 4.102 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.373 0.627 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.390 0.610 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.261 0.739 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.956 18.375 11.592 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.089 3.911 3 O -0.363 6.363 4 C -0.177 4.177 5 C -0.170 4.170 6 C 0.051 3.949 7 H 0.095 0.905 8 N -0.383 5.383 9 C 0.085 3.915 10 C -0.218 4.218 11 C -0.099 4.099 12 C -0.087 4.087 13 C 0.017 3.983 14 C -0.547 4.547 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.099 4.099 23 C -0.218 4.218 24 C -0.160 4.160 25 C -0.140 4.140 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.220 0.780 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.224 0.776 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.133 0.867 41 H 0.124 0.876 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.455 18.190 12.067 24.651 hybrid contribution -1.013 -0.076 -1.497 1.809 sum -12.468 18.114 10.570 24.399 Atomic orbital electron populations 1.22492 0.96087 1.02764 1.02308 1.21199 0.91875 0.82457 0.95528 1.86526 1.77229 1.23231 1.49359 1.22120 0.96924 1.01582 0.97029 1.21932 0.95231 1.00714 0.99138 1.20730 0.98500 0.81608 0.94031 0.90545 1.44564 1.29631 1.05658 1.58462 1.17601 0.92202 0.88157 0.93503 1.20540 0.97365 0.99178 1.04723 1.20850 0.99156 0.92542 0.97392 1.20438 0.95872 0.95750 0.96667 1.18234 0.94696 0.91511 0.93886 1.21104 1.19113 1.19013 0.95422 0.92647 1.25017 0.95109 0.95668 0.98659 1.69955 1.25753 1.22256 1.35629 0.86634 0.78957 0.77667 0.84626 1.20244 1.21311 1.20256 1.20813 0.94711 0.98408 0.95918 1.20442 1.02333 0.91958 1.07094 1.21723 0.95282 1.01450 0.97503 1.21471 0.96372 0.99559 0.96599 0.91948 0.92392 0.91579 0.78010 0.90715 0.92154 0.91360 0.91175 0.77565 0.87300 0.86774 0.95749 0.95756 0.92924 0.86735 0.87627 0.90013 0.91551 0.90950 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 8.82 37.16 0.33 -0.91 16 2 C 0.13 1.04 0.98 -90.62 -0.09 0.95 16 3 O -0.56 -4.60 11.63 -35.23 -0.41 -5.01 16 4 C -0.14 -1.27 4.76 -26.73 -0.13 -1.40 16 5 C -0.13 -1.36 5.39 -26.73 -0.14 -1.51 16 6 C 0.16 1.68 2.48 -67.93 -0.17 1.51 16 7 H 0.08 0.89 6.49 -51.93 -0.34 0.55 16 8 N -0.75 -9.11 4.40 -52.17 -0.23 -9.34 16 9 C 0.18 2.95 6.64 -83.79 -0.56 2.39 16 10 C -0.20 -3.37 8.84 -39.38 -0.35 -3.72 16 11 C -0.08 -1.63 9.69 -39.61 -0.38 -2.01 16 12 C -0.09 -1.92 5.07 -104.59 -0.53 -2.45 16 13 C 0.05 1.42 5.10 -29.03 -0.15 1.27 16 14 C -0.51 -14.58 9.09 -34.44 -0.31 -14.89 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 18 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.08 -1.61 9.69 -39.61 -0.38 -1.99 16 23 C -0.20 -3.34 9.90 -39.38 -0.39 -3.73 16 24 C -0.12 -1.10 5.46 -26.73 -0.15 -1.25 16 25 C -0.10 -0.84 4.77 -26.73 -0.13 -0.97 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.37 1.93 9.05 45.56 0.41 2.34 16 30 H 0.07 0.77 7.61 -51.93 -0.39 0.38 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 33 H 0.07 0.68 7.68 -51.93 -0.40 0.29 16 34 H 0.39 4.18 6.88 -40.82 -0.28 3.90 16 35 H 0.11 1.65 6.09 -52.49 -0.32 1.33 16 36 H 0.11 2.26 8.06 -52.49 -0.42 1.83 16 37 H 0.02 0.67 8.08 -51.93 -0.42 0.26 16 38 H 0.02 0.67 8.08 -51.92 -0.42 0.25 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.11 2.25 8.06 -52.48 -0.42 1.83 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 42 H 0.08 0.77 7.68 -51.93 -0.40 0.37 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.56 6.50 -51.93 -0.34 0.22 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -31.11 353.21 -9.87 -40.97 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.64 Total: 4.59 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -3.62 Total: -27.17 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.51 Total: -35.61 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.41 Total: -5.01 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.11 -9.87 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162359897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.107 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds