Wall clock time and date at job start Tue Mar 31 2020 05:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47266 * 2 1 4 4 C 1.52997 * 109.47232 * 240.00097 * 2 1 3 5 5 C 1.53005 * 109.47452 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47159 * 59.99536 * 5 4 2 7 7 H 1.08996 * 109.46929 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.46684 * 60.00602 * 6 5 4 9 9 C 1.39668 * 120.00369 * 84.99713 * 8 6 5 10 10 C 1.38915 * 120.07111 * 359.72593 * 9 8 6 11 11 C 1.38106 * 119.92376 * 179.76805 * 10 9 8 12 12 C 1.38294 * 120.07284 * 0.50465 * 11 10 9 13 13 C 1.50698 * 119.92150 * 179.76555 * 12 11 10 14 14 C 1.50704 * 109.47351 * 269.97757 * 13 12 11 15 15 H 1.08000 * 119.99400 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00142 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99715 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00140 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47104 * 59.99833 * 18 16 14 20 20 H 1.48503 * 109.47467 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47003 * 299.99958 * 18 16 14 22 22 C 1.38283 * 120.14843 * 359.74992 * 12 11 10 23 23 C 1.38103 * 120.07540 * 359.97438 * 22 12 11 24 24 C 1.52997 * 109.47317 * 300.00546 * 6 5 4 25 25 C 1.53000 * 109.47060 * 59.99960 * 24 6 5 26 26 H 1.09000 * 109.47140 * 299.99752 * 1 2 3 27 27 H 1.09001 * 109.46922 * 60.00052 * 1 2 3 28 28 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 29 29 H 0.96696 * 114.00040 * 300.00240 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99992 * 4 2 1 31 31 H 1.09001 * 109.47289 * 60.00075 * 4 2 1 32 32 H 1.09000 * 109.47360 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.46935 * 300.00125 * 5 4 2 34 34 H 0.97004 * 119.99411 * 265.00023 * 8 6 5 35 35 H 1.07995 * 120.03841 * 359.97438 * 10 9 8 36 36 H 1.07996 * 119.96473 * 180.24856 * 11 10 9 37 37 H 1.08998 * 109.47415 * 29.98200 * 13 12 11 38 38 H 1.09008 * 109.46483 * 149.98126 * 13 12 11 39 39 H 0.96999 * 119.99717 * 180.02562 * 17 16 14 40 40 H 1.08003 * 119.96011 * 180.02562 * 22 12 11 41 41 H 1.07999 * 120.03487 * 179.97438 * 23 22 12 42 42 H 1.09002 * 109.47153 * 299.99641 * 24 6 5 43 43 H 1.09001 * 109.46832 * 179.97438 * 24 6 5 44 44 H 1.08992 * 109.47399 * 59.99823 * 25 24 6 45 45 H 1.09004 * 109.46724 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0806 -1.4415 -0.0003 7 1 5.1706 -1.4415 -0.0009 8 7 3.5928 -2.8229 -0.0001 9 6 4.2943 -3.8115 -0.6939 10 6 5.4517 -3.4854 -1.3895 11 6 6.1457 -4.4661 -2.0705 12 6 5.6838 -5.7697 -2.0692 13 6 6.4408 -6.8362 -2.8178 14 6 5.9241 -6.9209 -4.2310 15 1 5.1274 -6.2674 -4.5546 16 6 6.4683 -7.8325 -5.1105 17 7 7.4381 -8.6285 -4.7161 18 14 5.8282 -7.9370 -6.8623 19 1 6.0192 -6.6285 -7.5380 20 1 6.5733 -8.9889 -7.5997 21 1 4.3829 -8.2772 -6.8417 22 6 4.5291 -6.0967 -1.3822 23 6 3.8335 -5.1219 -0.6944 24 6 3.5706 -0.7203 1.2489 25 6 2.0406 -0.7209 1.2492 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7210 1.8654 -0.7650 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.9334 -1.2341 -2.1398 33 1 3.9330 0.3071 -1.2498 34 1 2.7825 -3.0510 0.4820 35 1 5.8103 -2.4667 -1.3949 36 1 7.0478 -4.2141 -2.6081 37 1 7.5016 -6.5859 -2.8333 38 1 6.3013 -7.7967 -2.3217 39 1 7.8212 -9.2697 -5.3350 40 1 4.1714 -7.1157 -1.3828 41 1 2.9315 -5.3779 -0.1584 42 1 3.9335 0.3075 1.2487 43 1 3.9340 -1.2341 2.1388 44 1 1.6777 -1.7486 1.2494 45 1 1.6773 -0.2067 2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162359897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:36 Heat of formation + Delta-G solvation = -67.643679 kcal Electronic energy + Delta-G solvation = -22982.920790 eV Core-core repulsion = 19769.976152 eV Total energy + Delta-G solvation = -3212.944638 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09380 -39.84738 -37.32640 -35.42418 -34.18719 -32.40821 -31.89670 -31.52222 -30.95617 -27.99452 -27.00930 -24.78377 -23.88250 -23.42289 -22.11749 -21.64684 -20.10524 -18.49182 -18.26968 -17.45908 -16.76735 -16.60954 -16.29120 -15.68915 -15.59717 -15.33383 -14.86233 -14.67244 -14.49295 -14.37597 -14.08135 -13.95576 -13.58395 -13.34064 -13.18821 -13.13615 -12.98718 -12.73885 -12.54480 -12.46095 -12.38290 -12.14546 -11.91241 -11.65755 -11.57122 -11.50859 -11.33084 -11.08628 -10.59691 -10.57502 -10.43876 -9.65920 -8.28566 -7.91703 -6.29955 0.69454 0.92033 1.39446 1.42676 1.50971 2.41702 2.62311 3.12921 3.18122 3.36238 3.70819 3.78743 3.96906 4.12034 4.13959 4.24444 4.25559 4.41216 4.45504 4.52869 4.58167 4.65156 4.74198 4.80313 4.82040 4.87068 4.94926 5.00608 5.08773 5.12683 5.21265 5.24520 5.30086 5.32932 5.37660 5.39563 5.42623 5.48486 5.58435 5.71802 5.82940 6.07456 6.25485 6.26263 6.63535 6.83340 6.94418 7.02073 7.38306 8.92332 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.003140 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.857089 B = 8915.401396 C = 9319.448778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.134 3.866 3 O -0.569 6.569 4 C -0.136 4.136 5 C -0.128 4.128 6 C 0.154 3.846 7 H 0.070 0.930 8 N -0.733 5.733 9 C 0.204 3.796 10 C -0.194 4.194 11 C -0.090 4.090 12 C -0.125 4.125 13 C 0.064 3.936 14 C -0.527 4.527 15 H 0.052 0.948 16 C 0.001 3.999 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.089 4.089 23 C -0.192 4.192 24 C -0.114 4.114 25 C -0.105 4.105 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.386 0.614 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.401 0.599 35 H 0.131 0.869 36 H 0.106 0.894 37 H -0.004 1.004 38 H -0.003 1.003 39 H 0.265 0.735 40 H 0.109 0.891 41 H 0.138 0.862 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.282 20.497 12.059 27.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.094 3.906 3 O -0.377 6.377 4 C -0.174 4.174 5 C -0.167 4.167 6 C 0.049 3.951 7 H 0.088 0.912 8 N -0.365 5.365 9 C 0.102 3.898 10 C -0.216 4.216 11 C -0.109 4.109 12 C -0.126 4.126 13 C 0.027 3.973 14 C -0.565 4.565 15 H 0.071 0.929 16 C -0.196 4.196 17 N -0.573 5.573 18 Si 0.789 3.211 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.192 1.192 22 C -0.108 4.108 23 C -0.214 4.214 24 C -0.152 4.152 25 C -0.143 4.143 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.235 0.765 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.238 0.762 35 H 0.149 0.851 36 H 0.124 0.876 37 H 0.014 0.986 38 H 0.015 0.985 39 H 0.073 0.927 40 H 0.127 0.873 41 H 0.156 0.844 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.812 20.354 12.558 27.618 hybrid contribution -0.318 -0.606 -1.539 1.685 sum -14.129 19.748 11.019 26.665 Atomic orbital electron populations 1.22458 0.95099 1.03038 1.02792 1.21129 0.92532 0.82297 0.94637 1.86498 1.77525 1.23339 1.50355 1.22101 0.95815 1.01315 0.98170 1.21875 0.96263 1.00778 0.97779 1.20871 0.98238 0.80722 0.95305 0.91231 1.44602 1.29353 1.05579 1.57007 1.17651 0.91431 0.88627 0.92127 1.20668 0.97479 0.99418 1.04080 1.20821 0.99445 0.92425 0.98225 1.20111 0.97583 0.95583 0.99360 1.17968 0.93657 0.91814 0.93848 1.21432 1.19160 1.19137 0.96745 0.92938 1.25962 0.95189 0.95079 1.03407 1.70089 1.26963 1.22907 1.37353 0.85500 0.78653 0.78076 0.78830 1.19299 1.20504 1.19239 1.20815 0.94403 0.99137 0.96416 1.20645 1.02869 0.91583 1.06345 1.21643 0.95978 1.01078 0.96462 1.21521 0.95574 1.00138 0.97018 0.91753 0.91682 0.91415 0.76490 0.91682 0.91492 0.93484 0.90363 0.76168 0.85083 0.87573 0.98601 0.98490 0.92655 0.87278 0.84424 0.90029 0.91157 0.90295 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 8.82 71.98 0.63 -1.27 16 2 C 0.13 1.75 0.98 -10.79 -0.01 1.74 16 3 O -0.57 -7.72 11.63 -148.98 -1.73 -9.45 16 4 C -0.14 -2.13 4.76 30.60 0.15 -1.98 16 5 C -0.13 -2.37 5.39 30.60 0.16 -2.20 16 6 C 0.15 2.88 2.48 44.99 0.11 3.00 16 7 H 0.07 1.45 6.49 -2.39 -0.02 1.43 16 8 N -0.73 -15.64 4.40 -318.96 -1.40 -17.04 16 9 C 0.20 6.09 6.64 38.22 0.25 6.34 16 10 C -0.19 -6.49 8.84 22.40 0.20 -6.29 16 11 C -0.09 -3.75 9.69 22.25 0.22 -3.53 16 12 C -0.12 -5.82 5.07 -19.84 -0.10 -5.92 16 13 C 0.06 3.62 5.10 29.10 0.15 3.77 16 14 C -0.53 -31.39 9.09 25.60 0.23 -31.15 16 15 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 16 C 0.00 0.07 5.46 84.65 0.46 0.53 16 17 N -0.93 -58.02 13.29 21.45 0.28 -57.74 16 18 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 C -0.09 -3.63 9.69 22.25 0.22 -3.41 16 23 C -0.19 -6.21 9.90 22.40 0.22 -5.99 16 24 C -0.11 -1.72 5.46 30.59 0.17 -1.55 16 25 C -0.11 -1.38 4.77 30.60 0.15 -1.24 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.39 2.88 9.05 -74.06 -0.67 2.21 16 30 H 0.06 1.16 7.61 -2.39 -0.02 1.14 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 1.08 7.68 -2.39 -0.02 1.06 16 33 H 0.08 1.34 7.68 -2.39 -0.02 1.32 16 34 H 0.40 7.11 6.88 -92.71 -0.64 6.47 16 35 H 0.13 3.75 6.09 -2.91 -0.02 3.73 16 36 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 37 H 0.00 -0.26 8.08 -2.39 -0.02 -0.28 16 38 H 0.00 -0.19 8.08 -2.38 -0.02 -0.21 16 39 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 40 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 41 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 42 H 0.08 1.29 7.68 -2.39 -0.02 1.27 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.08 0.93 6.50 -2.39 -0.02 0.92 16 45 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -68.93 353.21 2.05 -66.88 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -0.33 Total: 18.99 kcal Atomic # 6 Polarization: -52.37 SS G_CDS: 3.21 Total: -49.16 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -1.12 Total: -74.78 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -1.73 Total: -9.45 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -68.93 2.05 -66.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162359897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.762 kcal (2) G-P(sol) polarization free energy of solvation -68.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds