Wall clock time and date at job start Tue Mar 31 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46964 * 2 1 4 4 C 1.38137 * 120.00837 * 265.27906 * 3 2 1 5 5 C 1.38676 * 120.01561 * 180.28015 * 4 3 2 6 6 O 1.36006 * 119.98103 * 179.70233 * 5 4 3 7 7 C 1.42903 * 116.99899 * 180.02562 * 6 5 4 8 8 C 1.38720 * 120.03920 * 359.71574 * 5 4 3 9 9 C 1.38086 * 120.02030 * 0.02562 * 8 5 4 10 10 C 1.38838 * 120.00913 * 85.00732 * 3 2 1 11 11 N 1.39942 * 120.01887 * 359.97438 * 10 3 2 12 12 C 1.46500 * 120.00050 * 179.73176 * 11 10 3 13 13 H 1.09005 * 109.41093 * 324.86308 * 12 11 10 14 14 C 1.53005 * 109.33824 * 84.48762 * 12 11 10 15 15 C 1.53232 * 109.37855 * 183.47556 * 14 12 11 16 16 C 1.51270 * 108.69741 * 305.66359 * 15 14 12 17 17 C 1.37867 * 120.85172 * 231.22989 * 16 15 14 18 18 N 1.31515 * 120.00018 * 359.97438 * 17 16 15 19 19 Si 1.86801 * 120.00257 * 179.97438 * 17 16 15 20 20 H 1.48507 * 109.46725 * 60.00124 * 19 17 16 21 21 H 1.48499 * 109.47402 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47138 * 300.00522 * 19 17 16 23 23 C 1.51271 * 118.29945 * 51.25119 * 16 15 14 24 24 C 1.52953 * 109.41448 * 205.00360 * 12 11 10 25 25 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46711 * 299.99582 * 1 2 3 27 27 H 1.08995 * 109.47129 * 59.99730 * 1 2 3 28 28 H 1.09004 * 109.46711 * 240.00418 * 2 1 3 29 29 H 1.08995 * 109.47129 * 120.00270 * 2 1 3 30 30 H 1.07997 * 119.99180 * 0.02562 * 4 3 2 31 31 H 1.08996 * 109.46917 * 60.00136 * 7 6 5 32 32 H 1.09000 * 109.46884 * 179.97438 * 7 6 5 33 33 H 1.08994 * 109.47043 * 299.99826 * 7 6 5 34 34 H 1.08002 * 119.99192 * 179.97438 * 8 5 4 35 35 H 1.07999 * 120.00872 * 180.02562 * 9 8 5 36 36 H 0.96996 * 119.99885 * 359.73451 * 11 10 3 37 37 H 1.09003 * 109.33509 * 63.60317 * 14 12 11 38 38 H 1.08998 * 109.65336 * 303.54762 * 14 12 11 39 39 H 1.09002 * 109.62686 * 185.85253 * 15 14 12 40 40 H 1.09001 * 109.62522 * 65.47590 * 15 14 12 41 41 H 0.97001 * 120.00180 * 179.97438 * 18 17 16 42 42 H 1.08996 * 109.62720 * 68.36253 * 23 16 15 43 43 H 1.08991 * 109.62768 * 188.93933 * 23 16 15 44 44 H 1.08997 * 109.48509 * 56.38103 * 24 12 11 45 45 H 1.09004 * 109.49182 * 296.35014 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3554 2.0394 -1.1921 5 6 2.8232 3.3449 -1.1918 6 8 3.1468 3.9512 -2.3655 7 6 3.6227 5.2966 -2.2911 8 6 2.9614 4.0327 0.0049 9 6 2.6338 3.4177 1.1970 10 6 2.1651 2.1104 1.1977 11 7 1.8321 1.4866 2.4053 12 6 1.9780 2.2126 3.6694 13 1 2.8484 2.8665 3.6133 14 6 0.7267 3.0580 3.9154 15 6 0.9141 3.8840 5.1924 16 6 1.2723 2.9491 6.3264 17 6 0.5806 2.9860 7.5185 18 7 -0.4045 3.8420 7.6809 19 14 1.0425 1.8200 8.9029 20 1 2.4539 2.0572 9.2996 21 1 0.1544 2.0593 10.0687 22 1 0.8872 0.4172 8.4412 23 6 2.4092 1.9730 6.1192 24 6 2.1661 1.2125 4.8113 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 2.2476 1.5048 -2.1243 31 1 4.5284 5.3286 -1.6854 32 1 3.8442 5.6596 -3.2947 33 1 2.8590 5.9274 -1.8364 34 1 3.3262 5.0493 0.0042 35 1 2.7412 3.9536 2.1286 36 1 1.5048 0.5736 2.4054 37 1 -0.1357 2.4013 4.0306 38 1 0.5642 3.7270 3.0703 39 1 -0.0120 4.4081 5.4287 40 1 1.7168 4.6068 5.0464 41 1 -0.8914 3.8678 8.5194 42 1 3.3518 2.5167 6.0567 43 1 2.4437 1.2693 6.9508 44 1 3.0229 0.5736 4.5976 45 1 1.2704 0.5989 4.9086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167844380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:33 Heat of formation + Delta-G solvation = -50.864022 kcal Electronic energy + Delta-G solvation = -23364.272650 eV Core-core repulsion = 20152.055632 eV Total energy + Delta-G solvation = -3212.217017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.18481 -39.60753 -38.27406 -35.41443 -34.72166 -33.40685 -31.46034 -30.89374 -29.86050 -28.35684 -27.30250 -24.81078 -24.16075 -23.32110 -22.49531 -21.59458 -20.89385 -18.62914 -18.29359 -17.70609 -17.26736 -16.48448 -16.40492 -16.03074 -15.55507 -15.24292 -14.95504 -14.77115 -14.55017 -14.25905 -14.11992 -13.87430 -13.86097 -13.55849 -13.30383 -13.04084 -12.88420 -12.76265 -12.72020 -12.50380 -12.18738 -12.12501 -11.96389 -11.79278 -11.76601 -11.49459 -11.34244 -10.90980 -10.69483 -10.54746 -10.18463 -9.68648 -8.17318 -7.89242 -6.11697 0.44501 0.78630 1.40196 1.41023 1.49130 2.40479 2.53569 2.66085 2.93921 3.12711 3.89007 3.94272 4.04959 4.21706 4.26845 4.30470 4.38740 4.45385 4.52079 4.56017 4.57270 4.63077 4.72421 4.76509 4.85254 4.92162 4.98686 5.01906 5.04058 5.10211 5.15986 5.21037 5.22538 5.27942 5.33631 5.44416 5.55446 5.56660 5.58601 5.64027 5.76362 5.82464 5.84793 6.34217 6.46792 6.66611 6.95008 7.03215 7.46478 8.94224 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.003917 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.363354 B = 7145.853789 C = 7830.383034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C -0.128 4.128 4 C -0.108 4.108 5 C 0.052 3.948 6 O -0.338 6.338 7 C 0.022 3.978 8 C -0.164 4.164 9 C -0.176 4.176 10 C 0.185 3.815 11 N -0.737 5.737 12 C 0.176 3.824 13 H 0.063 0.937 14 C -0.104 4.104 15 C 0.009 3.991 16 C -0.499 4.499 17 C 0.021 3.979 18 N -0.934 5.934 19 Si 0.944 3.056 20 H -0.265 1.265 21 H -0.297 1.297 22 H -0.262 1.262 23 C -0.011 4.011 24 C -0.106 4.106 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.140 0.860 31 H 0.057 0.943 32 H 0.118 0.882 33 H 0.054 0.946 34 H 0.137 0.863 35 H 0.116 0.884 36 H 0.400 0.600 37 H 0.035 0.965 38 H 0.037 0.963 39 H 0.021 0.979 40 H -0.001 1.001 41 H 0.262 0.738 42 H 0.025 0.975 43 H 0.031 0.969 44 H 0.066 0.934 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.709 -5.005 -17.700 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.133 4.133 4 C -0.127 4.127 5 C 0.006 3.994 6 O -0.253 6.253 7 C -0.072 4.072 8 C -0.184 4.184 9 C -0.199 4.199 10 C 0.082 3.918 11 N -0.367 5.367 12 C 0.071 3.929 13 H 0.081 0.919 14 C -0.143 4.143 15 C -0.029 4.029 16 C -0.518 4.518 17 C -0.177 4.177 18 N -0.574 5.574 19 Si 0.771 3.229 20 H -0.190 1.190 21 H -0.224 1.224 22 H -0.187 1.187 23 C -0.049 4.049 24 C -0.144 4.144 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.158 0.842 31 H 0.076 0.924 32 H 0.136 0.864 33 H 0.073 0.927 34 H 0.155 0.845 35 H 0.134 0.866 36 H 0.237 0.763 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.039 0.961 40 H 0.017 0.983 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.049 0.951 44 H 0.085 0.915 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.602 -4.903 -17.610 19.436 hybrid contribution -0.327 0.065 1.387 1.427 sum 6.275 -4.838 -16.223 18.054 Atomic orbital electron populations 1.21737 0.94725 1.02257 1.01530 1.20375 0.96026 0.91102 1.03421 1.19349 1.05696 0.97816 0.90396 1.20205 1.01854 0.92510 0.98179 1.18847 1.02113 0.93642 0.84801 1.85994 1.81174 1.29731 1.28364 1.23202 0.98874 0.80116 1.05046 1.21111 1.04847 1.00913 0.91492 1.20615 1.06241 0.94746 0.98283 1.17790 0.95502 0.92105 0.86412 1.44912 1.73039 1.16308 1.02487 1.20561 0.96595 0.93237 0.82518 0.91895 1.21858 0.97567 0.97995 0.96926 1.19300 0.96274 0.94694 0.92612 1.20638 1.14966 1.17845 0.98390 1.25635 0.94735 0.97084 1.00296 1.69979 1.22865 1.38195 1.26318 0.85780 0.78291 0.80172 0.78670 1.19049 1.22371 1.18723 1.19611 0.96112 0.94909 0.94279 1.21693 1.00645 0.97115 0.94957 0.90867 0.94177 0.92661 0.89324 0.91095 0.84188 0.92439 0.86371 0.92703 0.84511 0.86622 0.76336 0.94612 0.94466 0.96059 0.98265 0.92867 0.95661 0.95074 0.91515 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.89 71.98 0.71 -2.16 16 2 C -0.07 -1.44 5.49 29.85 0.16 -1.28 16 3 C -0.13 -3.30 5.15 -19.74 -0.10 -3.40 16 4 C -0.11 -2.76 9.61 22.35 0.21 -2.55 16 5 C 0.05 1.39 6.69 22.49 0.15 1.54 16 6 O -0.34 -8.23 10.50 -93.62 -0.98 -9.22 16 7 C 0.02 0.37 9.81 113.37 1.11 1.48 16 8 C -0.16 -4.52 9.03 22.35 0.20 -4.32 16 9 C -0.18 -5.45 8.79 22.39 0.20 -5.26 16 10 C 0.19 5.54 6.61 38.14 0.25 5.79 16 11 N -0.74 -22.33 5.15 -318.87 -1.64 -23.97 16 12 C 0.18 6.32 2.05 44.98 0.09 6.41 16 13 H 0.06 2.34 6.49 -2.38 -0.02 2.32 16 14 C -0.10 -4.40 5.43 30.67 0.17 -4.24 16 15 C 0.01 0.47 5.96 30.11 0.18 0.65 16 16 C -0.50 -25.83 5.52 -16.17 -0.09 -25.92 16 17 C 0.02 1.12 5.46 84.65 0.46 1.58 16 18 N -0.93 -55.07 12.73 21.44 0.27 -54.80 16 19 Si 0.94 42.86 26.80 68.60 1.84 44.70 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 23 C -0.01 -0.48 5.59 30.11 0.17 -0.31 16 24 C -0.11 -3.85 5.41 30.66 0.17 -3.69 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 1.45 8.05 -2.39 -0.02 1.44 16 29 H 0.07 1.38 6.81 -2.39 -0.02 1.36 16 30 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 31 H 0.06 0.87 7.66 -2.39 -0.02 0.86 16 32 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 0.87 7.66 -2.39 -0.02 0.85 16 34 H 0.14 3.18 6.29 -2.91 -0.02 3.16 16 35 H 0.12 3.81 6.13 -2.91 -0.02 3.79 16 36 H 0.40 10.83 6.71 -92.71 -0.62 10.21 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.04 1.51 7.69 -2.39 -0.02 1.50 16 39 H 0.02 1.19 7.07 -2.39 -0.02 1.18 16 40 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 42 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.03 1.31 5.17 -2.39 -0.01 1.30 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -61.24 348.39 3.89 -57.34 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.36 Total: 21.59 kcal Atomic # 6 Polarization: -39.70 SS G_CDS: 4.05 Total: -35.65 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -1.37 Total: -78.77 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.98 Total: -9.22 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.84 Total: 44.70 kcal Total: -61.24 3.89 -57.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.480 kcal (2) G-P(sol) polarization free energy of solvation -61.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds