Wall clock time and date at job start Tue Mar 31 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38160 * 120.02787 * 2 1 4 4 C 1.38249 * 120.05481 * 180.02562 * 3 2 1 5 5 C 1.38291 * 120.10930 * 359.97438 * 4 3 2 6 6 C 1.38118 * 120.05762 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.02699 * 180.02562 * 6 5 4 8 8 N 1.46900 * 109.47212 * 259.99690 * 7 6 5 9 9 C 1.46901 * 110.99890 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46769 * 204.99887 * 9 8 7 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47317 * 59.99960 * 11 10 9 13 13 C 1.50706 * 109.46953 * 60.00071 * 12 11 10 14 14 H 1.07998 * 119.99823 * 240.00260 * 13 12 11 15 15 C 1.37879 * 119.99661 * 60.00040 * 13 12 11 16 16 N 1.31510 * 120.00409 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99651 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47389 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47057 * 120.00069 * 17 15 13 20 20 H 1.48495 * 109.47216 * 239.99942 * 17 15 13 21 21 C 1.53005 * 109.47159 * 300.00546 * 12 11 10 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 12 11 23 23 C 1.38717 * 120.02716 * 180.25713 * 2 1 3 24 24 O 1.35899 * 120.05215 * 0.02562 * 23 2 1 25 25 H 1.09006 * 109.47215 * 89.99579 * 1 2 3 26 26 H 1.09001 * 109.47371 * 209.99578 * 1 2 3 27 27 H 1.09003 * 109.47166 * 329.99731 * 1 2 3 28 28 H 1.08002 * 119.97278 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.94244 * 179.97438 * 4 3 2 30 30 H 1.08004 * 119.96968 * 180.02562 * 5 4 3 31 31 H 1.09005 * 109.46887 * 140.00009 * 7 6 5 32 32 H 1.09002 * 109.47143 * 20.00087 * 7 6 5 33 33 H 1.00902 * 110.99732 * 56.04320 * 8 7 6 34 34 H 1.08992 * 109.47407 * 325.00184 * 9 8 7 35 35 H 1.09002 * 109.47398 * 300.00295 * 10 9 8 36 36 H 1.09001 * 109.47194 * 60.00475 * 10 9 8 37 37 H 1.08996 * 109.47853 * 180.02562 * 11 10 9 38 38 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 39 39 H 1.09000 * 109.47486 * 180.02562 * 12 11 10 40 40 H 0.96998 * 120.00365 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.46935 * 299.99411 * 21 12 11 42 42 H 1.09001 * 109.46812 * 179.97438 * 21 12 11 43 43 H 1.08993 * 109.47194 * 179.97438 * 22 21 12 44 44 H 1.09002 * 109.46695 * 59.99734 * 22 21 12 45 45 H 0.96703 * 113.99750 * 270.24861 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1968 -0.0005 5 6 4.2752 0.0008 -0.0005 6 6 3.5887 -1.1976 0.0005 7 6 4.3460 -2.5005 0.0011 8 7 4.3835 -3.0457 -1.3625 9 6 5.1150 -4.3190 -1.4003 10 6 5.6740 -4.5444 -2.8066 11 6 6.4354 -5.8709 -2.8463 12 6 5.4858 -7.0150 -2.4856 13 6 4.3510 -7.0573 -3.4764 14 1 3.3330 -6.9356 -3.1370 15 6 4.6126 -7.2513 -4.8162 16 7 5.8522 -7.3999 -5.2294 17 14 3.2061 -7.3030 -6.0445 18 1 1.9182 -7.1109 -5.3306 19 1 3.3830 -6.2203 -7.0453 20 1 3.1992 -8.6181 -6.7340 21 6 4.9267 -6.7896 -1.0793 22 6 4.1653 -5.4631 -1.0396 23 6 2.2012 -1.2010 -0.0054 24 8 1.5233 -2.3788 -0.0112 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6584 2.1315 0.0004 29 1 4.1195 2.1329 -0.0010 30 1 5.3552 0.0040 -0.0005 31 1 3.8481 -3.2098 0.6624 32 1 5.3636 -2.3291 0.3521 33 1 4.7823 -2.3798 -2.0072 34 1 5.9357 -4.2881 -0.6838 35 1 4.8533 -4.5753 -3.5233 36 1 6.3503 -3.7291 -3.0638 37 1 6.8340 -6.0313 -3.8480 38 1 7.2561 -5.8403 -2.1296 39 1 6.0283 -7.9600 -2.5134 40 1 6.0363 -7.5360 -6.1720 41 1 5.7474 -6.7591 -0.3626 42 1 4.2498 -7.6045 -0.8226 43 1 3.7667 -5.3028 -0.0380 44 1 3.3446 -5.4937 -1.7564 45 1 1.3235 -2.7219 0.8705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331242.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:39 Heat of formation + Delta-G solvation = -40.772562 kcal Electronic energy + Delta-G solvation = -23340.972562 eV Core-core repulsion = 20129.193143 eV Total energy + Delta-G solvation = -3211.779419 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09855 -38.05365 -36.58008 -35.12144 -32.90190 -31.82333 -30.41188 -29.48993 -27.89998 -26.92244 -25.19067 -24.12284 -21.99918 -21.47084 -20.65805 -20.33120 -18.56038 -18.27142 -16.23150 -15.95425 -15.64055 -15.38032 -14.65605 -14.53018 -14.42594 -13.98427 -13.69980 -13.37592 -13.17716 -12.92712 -12.78112 -12.61814 -12.19341 -12.11868 -11.86186 -11.52027 -11.38160 -11.11748 -11.07098 -10.86667 -10.79571 -10.47210 -10.30200 -10.26775 -9.97493 -9.50744 -9.15767 -8.83641 -8.71718 -8.56649 -8.51704 -8.19605 -7.87800 -5.87780 -3.90903 1.20860 1.21293 3.37005 3.45344 3.50802 3.52501 4.24033 4.54036 4.62228 4.67604 4.76176 4.94809 5.12291 5.30241 5.41836 5.43278 5.46936 5.53821 5.62849 5.67559 5.78885 5.84695 5.94264 6.06565 6.14242 6.33611 6.34587 6.36405 6.51315 6.56485 6.58966 6.64546 6.76841 6.78549 6.83513 6.92925 7.23827 7.32856 7.44350 7.59350 7.72854 7.76486 7.80675 7.88885 8.02347 8.24359 8.59189 9.11802 9.72179 11.18341 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019648 B = 0.003933 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.744074 B = 7117.913252 C = 7640.888596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.118 4.118 3 C -0.111 4.111 4 C -0.129 4.129 5 C -0.107 4.107 6 C -0.101 4.101 7 C 0.107 3.893 8 N -0.673 5.673 9 C 0.097 3.903 10 C -0.101 4.101 11 C -0.105 4.105 12 C 0.044 3.956 13 C -0.495 4.495 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.883 3.117 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.287 1.287 21 C -0.108 4.108 22 C -0.088 4.088 23 C 0.131 3.869 24 O -0.477 6.477 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.030 0.970 33 H 0.335 0.665 34 H 0.025 0.975 35 H 0.079 0.921 36 H 0.027 0.973 37 H 0.092 0.908 38 H 0.011 0.989 39 H 0.023 0.977 40 H 0.257 0.743 41 H 0.029 0.971 42 H 0.046 0.954 43 H 0.031 0.969 44 H 0.077 0.923 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 15.923 12.948 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.118 4.118 3 C -0.129 4.129 4 C -0.147 4.147 5 C -0.126 4.126 6 C -0.102 4.102 7 C -0.022 4.022 8 N -0.303 5.303 9 C -0.012 4.012 10 C -0.138 4.138 11 C -0.143 4.143 12 C 0.025 3.975 13 C -0.533 4.533 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.712 3.288 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.213 1.213 21 C -0.146 4.146 22 C -0.126 4.126 23 C 0.085 3.915 24 O -0.286 6.286 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.153 0.847 34 H 0.043 0.957 35 H 0.098 0.902 36 H 0.046 0.954 37 H 0.110 0.890 38 H 0.030 0.970 39 H 0.041 0.959 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.095 0.905 45 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.511 15.628 12.226 20.594 hybrid contribution 0.238 0.323 -0.198 0.447 sum -5.273 15.951 12.028 20.662 Atomic orbital electron populations 1.20630 0.90800 1.02279 1.02586 1.20256 0.96672 0.92712 1.02207 1.20885 0.94168 0.97013 1.00839 1.21064 0.94215 0.97901 1.01541 1.20975 0.99778 0.91650 1.00209 1.20283 0.93385 0.95509 1.01068 1.20718 0.96576 0.92118 0.92785 1.60512 1.58821 1.05721 1.05295 1.21573 0.93358 0.88468 0.97780 1.21540 0.99813 0.97337 0.95157 1.21486 0.96269 0.94249 1.02330 1.18691 0.94535 0.94104 0.90152 1.21210 0.92969 1.47562 0.91555 0.92519 1.24926 0.95146 0.95569 0.98386 1.69878 1.17958 1.50552 1.15016 0.86664 0.83179 0.77347 0.81627 1.19771 1.21222 1.21319 1.21584 0.97843 0.96011 0.99198 1.21343 0.98752 0.93373 0.99135 1.18106 0.89119 0.85001 0.99253 1.84971 1.75868 1.35493 1.32290 0.91059 0.91443 0.91944 0.86038 0.86065 0.86025 0.90466 0.95232 0.84749 0.95675 0.90191 0.95387 0.89015 0.97039 0.95938 0.93349 0.95250 0.93556 0.95061 0.90454 0.76332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.79 36.01 0.35 -0.63 16 2 C -0.12 -1.34 5.89 -104.47 -0.62 -1.95 16 3 C -0.11 -1.12 9.70 -39.61 -0.38 -1.51 16 4 C -0.13 -1.30 10.04 -39.56 -0.40 -1.70 16 5 C -0.11 -1.21 9.66 -39.61 -0.38 -1.59 16 6 C -0.10 -1.31 5.41 -104.48 -0.56 -1.87 16 7 C 0.11 1.49 5.27 -4.98 -0.03 1.46 16 8 N -0.67 -11.25 6.30 -107.99 -0.68 -11.93 16 9 C 0.10 1.81 2.50 -67.71 -0.17 1.64 16 10 C -0.10 -2.14 4.97 -26.73 -0.13 -2.27 16 11 C -0.10 -2.48 5.23 -26.73 -0.14 -2.62 16 12 C 0.04 1.09 2.59 -91.77 -0.24 0.85 16 13 C -0.49 -13.43 6.61 -34.44 -0.23 -13.65 16 14 H 0.06 1.56 6.71 -52.49 -0.35 1.21 16 15 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 16 N -0.89 -25.63 11.32 55.43 0.63 -25.00 16 17 Si 0.88 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 C -0.11 -2.30 5.41 -26.73 -0.14 -2.45 16 22 C -0.09 -1.75 5.20 -26.73 -0.14 -1.89 16 23 C 0.13 1.69 6.65 -39.22 -0.26 1.43 16 24 O -0.48 -6.22 11.80 -19.42 -0.23 -6.45 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.59 7.54 -51.93 -0.39 0.20 16 27 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.12 1.19 8.04 -52.48 -0.42 0.77 16 31 H 0.08 1.08 7.16 -51.93 -0.37 0.71 16 32 H 0.03 0.39 7.92 -51.93 -0.41 -0.02 16 33 H 0.33 5.46 8.34 -39.29 -0.33 5.14 16 34 H 0.03 0.46 7.80 -51.93 -0.41 0.06 16 35 H 0.08 1.93 7.22 -51.93 -0.37 1.55 16 36 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 37 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 38 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.03 0.56 7.45 -51.93 -0.39 0.17 16 44 H 0.08 1.75 6.62 -51.93 -0.34 1.40 16 45 H 0.38 3.24 9.06 45.56 0.41 3.65 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -30.09 351.76 -10.19 -40.28 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.62 Total: 6.27 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -3.56 Total: -25.20 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: -0.05 Total: -36.93 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.23 Total: -6.45 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.09 -10.19 -40.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331242.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.495 kcal (2) G-P(sol) polarization free energy of solvation -30.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds