Wall clock time and date at job start Tue Mar 31 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38160 * 120.02787 * 2 1 4 4 C 1.38249 * 120.05481 * 180.02562 * 3 2 1 5 5 C 1.38291 * 120.10930 * 359.97438 * 4 3 2 6 6 C 1.38118 * 120.05762 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.02699 * 180.02562 * 6 5 4 8 8 N 1.46900 * 109.47212 * 259.99690 * 7 6 5 9 9 C 1.46901 * 110.99890 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46769 * 204.99887 * 9 8 7 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47317 * 59.99960 * 11 10 9 13 13 C 1.50706 * 109.46953 * 60.00071 * 12 11 10 14 14 H 1.07998 * 119.99823 * 240.00260 * 13 12 11 15 15 C 1.37879 * 119.99661 * 60.00040 * 13 12 11 16 16 N 1.31510 * 120.00409 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99651 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47389 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47057 * 120.00069 * 17 15 13 20 20 H 1.48495 * 109.47216 * 239.99942 * 17 15 13 21 21 C 1.53005 * 109.47159 * 300.00546 * 12 11 10 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 12 11 23 23 C 1.38717 * 120.02716 * 180.25713 * 2 1 3 24 24 O 1.35899 * 120.05215 * 0.02562 * 23 2 1 25 25 H 1.09006 * 109.47215 * 89.99579 * 1 2 3 26 26 H 1.09001 * 109.47371 * 209.99578 * 1 2 3 27 27 H 1.09003 * 109.47166 * 329.99731 * 1 2 3 28 28 H 1.08002 * 119.97278 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.94244 * 179.97438 * 4 3 2 30 30 H 1.08004 * 119.96968 * 180.02562 * 5 4 3 31 31 H 1.09005 * 109.46887 * 140.00009 * 7 6 5 32 32 H 1.09002 * 109.47143 * 20.00087 * 7 6 5 33 33 H 1.00902 * 110.99732 * 56.04320 * 8 7 6 34 34 H 1.08992 * 109.47407 * 325.00184 * 9 8 7 35 35 H 1.09002 * 109.47398 * 300.00295 * 10 9 8 36 36 H 1.09001 * 109.47194 * 60.00475 * 10 9 8 37 37 H 1.08996 * 109.47853 * 180.02562 * 11 10 9 38 38 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 39 39 H 1.09000 * 109.47486 * 180.02562 * 12 11 10 40 40 H 0.96998 * 120.00365 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.46935 * 299.99411 * 21 12 11 42 42 H 1.09001 * 109.46812 * 179.97438 * 21 12 11 43 43 H 1.08993 * 109.47194 * 179.97438 * 22 21 12 44 44 H 1.09002 * 109.46695 * 59.99734 * 22 21 12 45 45 H 0.96703 * 113.99750 * 270.24861 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1968 -0.0005 5 6 4.2752 0.0008 -0.0005 6 6 3.5887 -1.1976 0.0005 7 6 4.3460 -2.5005 0.0011 8 7 4.3835 -3.0457 -1.3625 9 6 5.1150 -4.3190 -1.4003 10 6 5.6740 -4.5444 -2.8066 11 6 6.4354 -5.8709 -2.8463 12 6 5.4858 -7.0150 -2.4856 13 6 4.3510 -7.0573 -3.4764 14 1 3.3330 -6.9356 -3.1370 15 6 4.6126 -7.2513 -4.8162 16 7 5.8522 -7.3999 -5.2294 17 14 3.2061 -7.3030 -6.0445 18 1 1.9182 -7.1109 -5.3306 19 1 3.3830 -6.2203 -7.0453 20 1 3.1992 -8.6181 -6.7340 21 6 4.9267 -6.7896 -1.0793 22 6 4.1653 -5.4631 -1.0396 23 6 2.2012 -1.2010 -0.0054 24 8 1.5233 -2.3788 -0.0112 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6584 2.1315 0.0004 29 1 4.1195 2.1329 -0.0010 30 1 5.3552 0.0040 -0.0005 31 1 3.8481 -3.2098 0.6624 32 1 5.3636 -2.3291 0.3521 33 1 4.7823 -2.3798 -2.0072 34 1 5.9357 -4.2881 -0.6838 35 1 4.8533 -4.5753 -3.5233 36 1 6.3503 -3.7291 -3.0638 37 1 6.8340 -6.0313 -3.8480 38 1 7.2561 -5.8403 -2.1296 39 1 6.0283 -7.9600 -2.5134 40 1 6.0363 -7.5360 -6.1720 41 1 5.7474 -6.7591 -0.3626 42 1 4.2498 -7.6045 -0.8226 43 1 3.7667 -5.3028 -0.0380 44 1 3.3446 -5.4937 -1.7564 45 1 1.3235 -2.7219 0.8705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331242.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:39 Heat of formation + Delta-G solvation = -59.142260 kcal Electronic energy + Delta-G solvation = -23341.769131 eV Core-core repulsion = 20129.193143 eV Total energy + Delta-G solvation = -3212.575988 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.97133 -39.69139 -37.45831 -36.52332 -34.34611 -33.29288 -31.61033 -31.13811 -29.40192 -27.69567 -26.88988 -25.61603 -23.27453 -22.71084 -22.03692 -21.57080 -20.41638 -19.15556 -17.74591 -17.19563 -16.79775 -16.66856 -16.44364 -15.78549 -15.56715 -15.50397 -14.80059 -14.75594 -14.56887 -14.18470 -14.02366 -13.69721 -13.36502 -13.23775 -12.98642 -12.89225 -12.84428 -12.65154 -12.63919 -12.56729 -12.36597 -12.17950 -11.98135 -11.74824 -11.42048 -11.22615 -10.95091 -10.65170 -10.49611 -10.29872 -9.60154 -9.37668 -9.18712 -8.01687 -6.10276 0.36800 0.40076 1.38665 1.42205 1.52511 2.47171 2.69353 3.26699 3.39204 3.46372 3.80799 3.93204 4.08450 4.11049 4.21425 4.37813 4.46870 4.52862 4.56543 4.63388 4.70230 4.80000 4.80739 4.83186 4.88687 4.93642 4.94139 5.00168 5.08950 5.11621 5.23008 5.31201 5.45126 5.54583 5.54850 5.62421 5.64633 5.68446 5.70016 5.76638 5.99959 6.00801 6.22241 6.31250 6.49449 6.55528 6.97303 6.98944 7.55148 9.03318 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019648 B = 0.003933 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.744074 B = 7117.913252 C = 7640.888596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.131 4.131 3 C -0.111 4.111 4 C -0.130 4.130 5 C -0.113 4.113 6 C -0.120 4.120 7 C 0.112 3.888 8 N -0.682 5.682 9 C 0.109 3.891 10 C -0.092 4.092 11 C -0.100 4.100 12 C 0.038 3.962 13 C -0.500 4.500 14 H 0.048 0.952 15 C 0.015 3.985 16 N -0.919 5.919 17 Si 0.938 3.062 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.282 1.282 21 C -0.102 4.102 22 C -0.080 4.080 23 C 0.112 3.888 24 O -0.498 6.498 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.135 0.865 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.337 0.663 34 H 0.039 0.961 35 H 0.046 0.954 36 H 0.045 0.955 37 H 0.058 0.942 38 H 0.028 0.972 39 H -0.011 1.011 40 H 0.256 0.744 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.055 0.945 44 H 0.046 0.954 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.528 18.093 14.262 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.131 4.131 3 C -0.129 4.129 4 C -0.148 4.148 5 C -0.132 4.132 6 C -0.121 4.121 7 C -0.017 4.017 8 N -0.312 5.312 9 C 0.000 4.000 10 C -0.130 4.130 11 C -0.139 4.139 12 C 0.020 3.980 13 C -0.539 4.539 14 H 0.067 0.933 15 C -0.183 4.183 16 N -0.560 5.560 17 Si 0.765 3.235 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.208 1.208 21 C -0.140 4.140 22 C -0.118 4.118 23 C 0.066 3.934 24 O -0.309 6.309 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.164 0.836 29 H 0.165 0.835 30 H 0.153 0.847 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.155 0.845 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.007 0.993 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -6.027 17.799 13.558 23.173 hybrid contribution 0.392 -0.325 -0.571 0.764 sum -5.636 17.475 12.988 22.490 Atomic orbital electron populations 1.20653 0.89671 1.03401 1.02422 1.20533 0.97738 0.92674 1.02168 1.21253 0.94523 0.97597 0.99542 1.21407 0.94431 0.98560 1.00380 1.21199 1.00579 0.91568 0.99835 1.20268 0.93471 0.95525 1.02838 1.20693 0.97409 0.92671 0.90892 1.60427 1.58436 1.05163 1.07221 1.21319 0.93436 0.89248 0.96004 1.21374 0.98727 0.96564 0.96299 1.21336 0.96657 0.95108 1.00779 1.18693 0.94036 0.93115 0.92181 1.21417 0.93204 1.46965 0.92284 0.93347 1.25564 0.97066 0.95620 1.00016 1.70004 1.19386 1.51408 1.15208 0.85799 0.80699 0.77353 0.79612 1.19618 1.21042 1.20827 1.21486 0.98532 0.96886 0.97130 1.21222 0.97823 0.93132 0.99588 1.18356 0.89437 0.85419 1.00161 1.84915 1.76029 1.35995 1.33960 0.91760 0.91389 0.89841 0.83555 0.83467 0.84748 0.90720 0.94033 0.84511 0.94276 0.93556 0.93608 0.92326 0.95345 0.99250 0.93427 0.93141 0.93709 0.92637 0.93553 0.74612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.76 9.79 71.24 0.70 -1.06 16 2 C -0.13 -2.73 5.89 -19.77 -0.12 -2.84 16 3 C -0.11 -1.94 9.70 22.25 0.22 -1.73 16 4 C -0.13 -2.23 10.04 22.28 0.22 -2.01 16 5 C -0.11 -2.29 9.66 22.25 0.22 -2.07 16 6 C -0.12 -2.90 5.41 -19.77 -0.11 -3.01 16 7 C 0.11 2.90 5.27 85.56 0.45 3.35 16 8 N -0.68 -21.87 6.30 -495.57 -3.12 -24.99 16 9 C 0.11 3.92 2.50 44.92 0.11 4.03 16 10 C -0.09 -3.88 4.97 30.59 0.15 -3.73 16 11 C -0.10 -4.78 5.23 30.59 0.16 -4.62 16 12 C 0.04 1.94 2.59 -11.54 -0.03 1.91 16 13 C -0.50 -27.77 6.61 25.60 0.17 -27.60 16 14 H 0.05 2.72 6.71 -2.91 -0.02 2.70 16 15 C 0.01 0.84 5.30 84.66 0.45 1.29 16 16 N -0.92 -54.00 11.32 21.45 0.24 -53.75 16 17 Si 0.94 45.37 29.54 68.60 2.03 47.39 16 18 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 21 C -0.10 -4.28 5.41 30.60 0.17 -4.11 16 22 C -0.08 -3.09 5.20 30.59 0.16 -2.93 16 23 C 0.11 2.75 6.65 22.51 0.15 2.90 16 24 O -0.50 -12.67 11.80 -92.42 -1.09 -13.76 16 25 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.07 1.10 7.54 -2.39 -0.02 1.09 16 27 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 28 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 29 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.13 2.28 8.04 -2.91 -0.02 2.25 16 31 H 0.07 1.95 7.16 -2.38 -0.02 1.93 16 32 H 0.04 0.98 7.92 -2.39 -0.02 0.96 16 33 H 0.34 10.56 8.34 -89.69 -0.75 9.81 16 34 H 0.04 1.33 7.80 -2.39 -0.02 1.31 16 35 H 0.05 2.26 7.22 -2.39 -0.02 2.25 16 36 H 0.05 1.74 8.12 -2.39 -0.02 1.72 16 37 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 38 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 39 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 40 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.06 1.88 7.45 -2.39 -0.02 1.87 16 44 H 0.05 2.09 6.62 -2.39 -0.02 2.08 16 45 H 0.40 6.52 9.06 -74.06 -0.67 5.85 16 Total: -1.00 -65.34 351.76 0.69 -64.65 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -0.43 Total: 22.69 kcal Atomic # 6 Polarization: -45.30 SS G_CDS: 3.07 Total: -42.23 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -2.88 Total: -78.75 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -1.09 Total: -13.76 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -65.34 0.69 -64.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331242.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.509 kcal (2) G-P(sol) polarization free energy of solvation -65.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds