Wall clock time and date at job start Tue Mar 31 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47102 * 2 1 4 4 C 1.52999 * 113.00197 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.46832 * 207.56717 * 4 3 2 6 6 C 1.46899 * 111.00107 * 309.90737 * 5 4 3 7 7 C 1.50699 * 109.47193 * 305.56803 * 6 5 4 8 8 H 1.08002 * 120.00237 * 5.39955 * 7 6 5 9 9 C 1.37874 * 120.00010 * 185.39914 * 7 6 5 10 10 N 1.31517 * 119.99954 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00209 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47177 * 89.99916 * 11 9 7 13 13 H 1.48495 * 109.47511 * 210.00285 * 11 9 7 14 14 H 1.48500 * 109.46903 * 330.00297 * 11 9 7 15 15 C 1.46897 * 111.00043 * 73.86510 * 5 4 3 16 16 C 1.50703 * 109.47055 * 26.05580 * 15 5 4 17 17 C 1.38239 * 119.99817 * 269.72734 * 16 15 5 18 18 C 1.38233 * 119.99674 * 179.77180 * 17 16 15 19 19 C 1.38234 * 120.00008 * 0.50186 * 18 17 16 20 20 C 1.38239 * 120.00089 * 359.75091 * 19 18 17 21 21 C 1.38231 * 119.99897 * 359.97438 * 20 19 18 22 22 C 1.54042 * 113.81408 * 311.82795 * 3 2 1 23 23 O 1.44438 * 85.42728 * 91.80873 * 22 3 2 24 24 C 1.44181 * 93.38093 * 24.08810 * 23 22 3 25 25 H 1.08999 * 109.47388 * 60.00146 * 1 2 3 26 26 H 1.09001 * 109.46568 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46971 * 299.99680 * 1 2 3 28 28 H 1.08995 * 109.47311 * 239.99901 * 2 1 3 29 29 H 1.08999 * 109.47388 * 119.99854 * 2 1 3 30 30 H 1.08997 * 109.47139 * 87.56809 * 4 3 2 31 31 H 1.08994 * 109.47071 * 327.56596 * 4 3 2 32 32 H 1.08997 * 109.47247 * 65.57179 * 6 5 4 33 33 H 1.08997 * 109.46667 * 185.57084 * 6 5 4 34 34 H 0.97004 * 119.99632 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.47224 * 146.05398 * 15 5 4 36 36 H 1.08998 * 109.46946 * 266.05369 * 15 5 4 37 37 H 1.08003 * 119.99984 * 359.97438 * 17 16 15 38 38 H 1.07997 * 120.00010 * 180.23229 * 18 17 16 39 39 H 1.07999 * 120.00044 * 179.73037 * 19 18 17 40 40 H 1.07995 * 119.99933 * 179.97438 * 20 19 18 41 41 H 1.07997 * 119.99859 * 179.97438 * 21 20 19 42 42 H 1.09006 * 113.86078 * 205.91477 * 22 3 2 43 43 H 1.09000 * 113.86582 * 337.61629 * 22 3 2 44 44 H 1.08998 * 113.86531 * 221.76627 * 24 23 22 45 45 H 1.09002 * 113.86585 * 90.06386 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5671 1.5367 -0.0006 5 7 3.9804 2.7923 0.6404 6 6 3.2543 3.9366 0.0737 7 6 3.4290 3.9512 -1.4230 8 1 3.9461 3.1402 -1.9143 9 6 2.9286 4.9998 -2.1653 10 7 2.2994 5.9876 -1.5671 11 14 3.1458 5.0182 -4.0206 12 1 1.9907 4.3392 -4.6609 13 1 3.2203 6.4229 -4.4964 14 1 4.3991 4.3070 -4.3793 15 6 3.8010 2.7237 2.0967 16 6 3.8752 1.2868 2.5450 17 6 2.7256 0.5214 2.6051 18 6 2.7944 -0.7980 3.0118 19 6 4.0111 -1.3489 3.3681 20 6 5.1598 -0.5820 3.3129 21 6 5.0920 0.7358 2.9009 22 6 1.3612 2.3422 -1.0501 23 8 0.4263 2.6675 0.0018 24 6 1.3613 2.3422 1.0500 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.9319 1.5157 -1.0275 31 1 3.9833 0.6933 0.5502 32 1 2.1949 3.8503 0.3151 33 1 3.6486 4.8615 0.4945 34 1 1.9477 6.7256 -2.0893 35 1 4.5869 3.2983 2.5871 36 1 2.8284 3.1377 2.3629 37 1 1.7743 0.9533 2.3313 38 1 1.8969 -1.3971 3.0552 39 1 4.0641 -2.3785 3.6900 40 1 6.1103 -1.0123 3.5917 41 1 5.9894 1.3351 2.8582 42 1 1.9741 3.1844 -1.3715 43 1 0.9185 1.7932 -1.8812 44 1 0.9186 1.7933 1.8811 45 1 1.9741 3.1844 1.3714 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202912648.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:26 Heat of formation + Delta-G solvation = 110.221874 kcal Electronic energy + Delta-G solvation = -25540.645637 eV Core-core repulsion = 22335.413828 eV Total energy + Delta-G solvation = -3205.231808 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.68588 -38.85688 -36.12391 -33.46479 -32.90341 -31.17284 -30.72161 -28.55030 -27.53942 -26.54643 -25.26526 -23.74936 -22.77401 -22.16691 -21.39592 -19.79910 -18.00687 -17.28317 -16.54987 -15.95077 -15.45915 -15.30954 -14.94256 -14.51751 -14.40321 -14.22049 -13.80711 -13.46529 -13.06319 -12.79934 -12.48106 -12.29028 -12.16509 -11.77086 -11.60131 -11.36837 -11.31389 -10.98994 -10.94751 -10.77647 -10.69231 -10.60411 -10.46256 -10.33163 -9.99577 -9.61157 -9.49962 -9.12294 -8.62968 -8.60986 -8.42665 -8.06075 -6.99431 -6.22192 -4.15021 1.55486 1.60582 3.22900 3.30672 3.33496 3.97159 4.28015 4.58248 4.91242 5.03254 5.04491 5.09051 5.15372 5.15562 5.31904 5.36601 5.51076 5.61619 5.66697 5.72634 5.85879 5.88648 6.02005 6.08703 6.15606 6.20507 6.26017 6.30112 6.34176 6.40820 6.53084 6.60705 6.64567 6.68892 6.71858 6.77254 6.91943 7.02839 7.13321 7.20742 7.25022 7.31109 7.55217 7.86944 7.97539 8.11596 8.44887 8.83334 9.34578 10.85203 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020612 B = 0.006329 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.121266 B = 4422.783583 C = 5064.782496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.148 4.148 4 C 0.069 3.931 5 N -0.524 5.524 6 C 0.140 3.860 7 C -0.504 4.504 8 H 0.069 0.931 9 C 0.060 3.940 10 N -0.874 5.874 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.283 1.283 14 H -0.270 1.270 15 C 0.067 3.933 16 C -0.068 4.068 17 C -0.137 4.137 18 C -0.124 4.124 19 C -0.131 4.131 20 C -0.126 4.126 21 C -0.107 4.107 22 C -0.028 4.028 23 O -0.389 6.389 24 C -0.007 4.007 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.035 0.965 34 H 0.267 0.733 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.147 0.853 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.198 0.802 43 H 0.046 0.954 44 H 0.070 0.930 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 -11.554 7.647 13.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.150 4.150 4 C -0.059 4.059 5 N -0.247 5.247 6 C 0.016 3.984 7 C -0.542 4.542 8 H 0.087 0.913 9 C -0.145 4.145 10 N -0.510 5.510 11 Si 0.719 3.281 12 H -0.203 1.203 13 H -0.209 1.209 14 H -0.195 1.195 15 C -0.059 4.059 16 C -0.069 4.069 17 C -0.155 4.155 18 C -0.142 4.142 19 C -0.149 4.149 20 C -0.144 4.144 21 C -0.126 4.126 22 C -0.101 4.101 23 O -0.308 6.308 24 C -0.082 4.082 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.164 0.836 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.213 0.787 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.476 -11.178 7.512 13.548 hybrid contribution -0.708 -0.395 -0.869 1.189 sum 0.767 -11.572 6.642 13.365 Atomic orbital electron populations 1.21754 0.95879 0.99653 1.02807 1.21519 0.95871 0.95326 1.02052 1.24204 0.97914 0.95296 0.97567 1.22124 0.91325 0.92126 1.00367 1.62679 1.57689 1.04194 1.00116 1.20854 0.94462 0.88028 0.95047 1.20847 1.35268 1.06500 0.91586 0.91288 1.25054 0.95217 0.95073 0.99135 1.69951 1.35450 1.09495 1.36089 0.86561 0.78935 0.77679 0.84924 1.20256 1.20891 1.19461 1.21635 1.01028 0.91660 0.91623 1.19923 0.93242 0.96455 0.97242 1.22204 1.00257 0.94433 0.98556 1.21063 0.97533 0.95486 1.00160 1.21049 0.93025 0.99452 1.01384 1.21065 0.98059 0.94442 1.00803 1.21052 0.97425 0.95190 0.98923 1.27228 0.90073 1.03139 0.89619 1.89573 1.33524 1.90516 1.17228 1.25828 0.91911 0.98619 0.91804 0.92313 0.94161 0.92789 0.92328 0.91000 0.90417 0.91815 0.94073 0.94676 0.92337 0.90828 0.92448 0.83599 0.86642 0.86825 0.86622 0.86052 0.78726 0.93520 0.91236 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.63 37.16 0.32 -1.90 16 2 C -0.11 -1.74 5.04 -26.73 -0.13 -1.88 16 3 C -0.15 -2.72 0.69 -153.43 -0.11 -2.82 16 4 C 0.07 1.31 4.55 -3.82 -0.02 1.29 16 5 N -0.52 -10.52 5.04 -237.52 -1.20 -11.71 16 6 C 0.14 3.32 3.87 -4.98 -0.02 3.30 16 7 C -0.50 -12.73 5.54 -34.44 -0.19 -12.92 16 8 H 0.07 1.74 6.18 -52.49 -0.32 1.41 16 9 C 0.06 1.57 4.89 -17.82 -0.09 1.49 16 10 N -0.87 -24.07 13.29 55.43 0.74 -23.33 16 11 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 C 0.07 1.15 5.20 -4.98 -0.03 1.13 16 16 C -0.07 -1.03 3.29 -104.62 -0.34 -1.38 16 17 C -0.14 -1.97 5.61 -39.58 -0.22 -2.19 16 18 C -0.12 -1.58 8.77 -39.58 -0.35 -1.92 16 19 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 20 C -0.13 -1.54 10.05 -39.58 -0.40 -1.93 16 21 C -0.11 -1.49 9.50 -39.59 -0.38 -1.86 16 22 C -0.03 -0.61 6.93 37.65 0.26 -0.35 16 23 O -0.39 -8.69 10.53 -35.23 -0.37 -9.06 16 24 C -0.01 -0.13 4.17 37.64 0.16 0.02 16 25 H 0.06 1.00 6.53 -51.93 -0.34 0.66 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.85 6.53 -51.93 -0.34 0.51 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.05 4.44 -51.93 -0.23 0.82 16 30 H 0.08 1.59 6.48 -51.93 -0.34 1.26 16 31 H 0.06 1.14 5.27 -51.93 -0.27 0.86 16 32 H 0.04 1.03 2.89 -51.93 -0.15 0.88 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 36 H 0.06 1.00 4.91 -51.93 -0.26 0.75 16 37 H 0.15 2.19 2.69 -52.48 -0.14 2.05 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.11 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.20 4.79 1.86 -89.07 -0.17 4.63 16 43 H 0.05 0.99 7.33 -51.93 -0.38 0.61 16 44 H 0.07 1.19 4.71 -51.93 -0.24 0.94 16 45 H 0.13 2.56 1.89 -51.93 -0.10 2.46 16 LS Contribution 311.27 15.07 4.69 4.69 Total: -1.00 -26.95 311.27 -8.88 -35.83 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -5.79 Total: 12.25 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -1.93 Total: -23.88 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: -0.46 Total: -35.05 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.37 Total: -9.06 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -26.95 -8.88 -35.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202912648.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.052 kcal (2) G-P(sol) polarization free energy of solvation -26.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds