Wall clock time and date at job start Tue Mar 31 2020 06:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47102 * 2 1 4 4 C 1.52999 * 113.00197 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.46832 * 207.56717 * 4 3 2 6 6 C 1.46899 * 111.00107 * 309.90737 * 5 4 3 7 7 C 1.50699 * 109.47193 * 305.56803 * 6 5 4 8 8 H 1.08002 * 120.00237 * 5.39955 * 7 6 5 9 9 C 1.37874 * 120.00010 * 185.39914 * 7 6 5 10 10 N 1.31517 * 119.99954 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00209 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47177 * 89.99916 * 11 9 7 13 13 H 1.48495 * 109.47511 * 210.00285 * 11 9 7 14 14 H 1.48500 * 109.46903 * 330.00297 * 11 9 7 15 15 C 1.46897 * 111.00043 * 73.86510 * 5 4 3 16 16 C 1.50703 * 109.47055 * 26.05580 * 15 5 4 17 17 C 1.38239 * 119.99817 * 269.72734 * 16 15 5 18 18 C 1.38233 * 119.99674 * 179.77180 * 17 16 15 19 19 C 1.38234 * 120.00008 * 0.50186 * 18 17 16 20 20 C 1.38239 * 120.00089 * 359.75091 * 19 18 17 21 21 C 1.38231 * 119.99897 * 359.97438 * 20 19 18 22 22 C 1.54042 * 113.81408 * 311.82795 * 3 2 1 23 23 O 1.44438 * 85.42728 * 91.80873 * 22 3 2 24 24 C 1.44181 * 93.38093 * 24.08810 * 23 22 3 25 25 H 1.08999 * 109.47388 * 60.00146 * 1 2 3 26 26 H 1.09001 * 109.46568 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46971 * 299.99680 * 1 2 3 28 28 H 1.08995 * 109.47311 * 239.99901 * 2 1 3 29 29 H 1.08999 * 109.47388 * 119.99854 * 2 1 3 30 30 H 1.08997 * 109.47139 * 87.56809 * 4 3 2 31 31 H 1.08994 * 109.47071 * 327.56596 * 4 3 2 32 32 H 1.08997 * 109.47247 * 65.57179 * 6 5 4 33 33 H 1.08997 * 109.46667 * 185.57084 * 6 5 4 34 34 H 0.97004 * 119.99632 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.47224 * 146.05398 * 15 5 4 36 36 H 1.08998 * 109.46946 * 266.05369 * 15 5 4 37 37 H 1.08003 * 119.99984 * 359.97438 * 17 16 15 38 38 H 1.07997 * 120.00010 * 180.23229 * 18 17 16 39 39 H 1.07999 * 120.00044 * 179.73037 * 19 18 17 40 40 H 1.07995 * 119.99933 * 179.97438 * 20 19 18 41 41 H 1.07997 * 119.99859 * 179.97438 * 21 20 19 42 42 H 1.09006 * 113.86078 * 205.91477 * 22 3 2 43 43 H 1.09000 * 113.86582 * 337.61629 * 22 3 2 44 44 H 1.08998 * 113.86531 * 221.76627 * 24 23 22 45 45 H 1.09002 * 113.86585 * 90.06386 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5671 1.5367 -0.0006 5 7 3.9804 2.7923 0.6404 6 6 3.2543 3.9366 0.0737 7 6 3.4290 3.9512 -1.4230 8 1 3.9461 3.1402 -1.9143 9 6 2.9286 4.9998 -2.1653 10 7 2.2994 5.9876 -1.5671 11 14 3.1458 5.0182 -4.0206 12 1 1.9907 4.3392 -4.6609 13 1 3.2203 6.4229 -4.4964 14 1 4.3991 4.3070 -4.3793 15 6 3.8010 2.7237 2.0967 16 6 3.8752 1.2868 2.5450 17 6 2.7256 0.5214 2.6051 18 6 2.7944 -0.7980 3.0118 19 6 4.0111 -1.3489 3.3681 20 6 5.1598 -0.5820 3.3129 21 6 5.0920 0.7358 2.9009 22 6 1.3612 2.3422 -1.0501 23 8 0.4263 2.6675 0.0018 24 6 1.3613 2.3422 1.0500 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.9319 1.5157 -1.0275 31 1 3.9833 0.6933 0.5502 32 1 2.1949 3.8503 0.3151 33 1 3.6486 4.8615 0.4945 34 1 1.9477 6.7256 -2.0893 35 1 4.5869 3.2983 2.5871 36 1 2.8284 3.1377 2.3629 37 1 1.7743 0.9533 2.3313 38 1 1.8969 -1.3971 3.0552 39 1 4.0641 -2.3785 3.6900 40 1 6.1103 -1.0123 3.5917 41 1 5.9894 1.3351 2.8582 42 1 1.9741 3.1844 -1.3715 43 1 0.9185 1.7932 -1.8812 44 1 0.9186 1.7933 1.8811 45 1 1.9741 3.1844 1.3714 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202912648.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:25 Heat of formation + Delta-G solvation = 93.982088 kcal Electronic energy + Delta-G solvation = -25541.349847 eV Core-core repulsion = 22335.413828 eV Total energy + Delta-G solvation = -3205.936018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.22592 -40.01207 -37.66688 -35.20094 -34.41963 -32.51621 -31.75041 -30.00379 -29.28961 -28.08713 -26.75591 -25.46277 -24.12243 -23.21293 -22.82412 -21.19690 -19.53096 -18.93229 -18.03102 -17.38283 -17.06702 -16.80795 -16.25130 -16.07303 -15.96659 -15.52613 -15.18277 -14.87631 -14.33479 -13.97972 -13.92831 -13.80180 -13.51939 -13.26289 -13.05460 -12.92557 -12.71463 -12.70242 -12.49319 -12.31871 -12.14887 -12.05502 -11.87618 -11.73511 -11.52455 -11.23328 -11.12377 -10.83432 -10.50618 -9.84066 -9.63246 -9.49741 -8.62829 -8.22158 -6.18535 0.52596 0.60517 1.40894 1.42757 1.52449 2.37382 2.93087 3.01079 3.10802 3.38443 3.59180 3.87477 3.93498 3.96435 4.13461 4.19606 4.30569 4.41047 4.42113 4.45431 4.61136 4.65535 4.72270 4.76167 4.85029 4.87701 4.90975 4.99140 5.07397 5.12119 5.20046 5.24202 5.27461 5.33746 5.34184 5.47601 5.49210 5.55036 5.64233 5.67922 5.72323 5.84575 5.93141 6.18766 6.21779 6.38941 6.66965 6.85308 7.33488 8.85827 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020612 B = 0.006329 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.121266 B = 4422.783583 C = 5064.782496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C -0.126 4.126 4 C 0.075 3.925 5 N -0.532 5.532 6 C 0.155 3.845 7 C -0.501 4.501 8 H 0.067 0.933 9 C 0.014 3.986 10 N -0.913 5.913 11 Si 0.949 3.051 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.262 1.262 15 C 0.069 3.931 16 C -0.086 4.086 17 C -0.146 4.146 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.117 4.117 22 C -0.043 4.043 23 O -0.411 6.411 24 C -0.005 4.005 25 H 0.036 0.964 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.034 0.966 33 H -0.001 1.001 34 H 0.266 0.734 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.122 0.878 42 H 0.174 0.826 43 H 0.049 0.951 44 H 0.096 0.904 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.822 -14.954 8.415 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 C -0.127 4.127 4 C -0.053 4.053 5 N -0.255 5.255 6 C 0.029 3.971 7 C -0.539 4.539 8 H 0.085 0.915 9 C -0.187 4.187 10 N -0.551 5.551 11 Si 0.774 3.226 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.186 1.186 15 C -0.057 4.057 16 C -0.086 4.086 17 C -0.164 4.164 18 C -0.143 4.143 19 C -0.142 4.142 20 C -0.142 4.142 21 C -0.136 4.136 22 C -0.116 4.116 23 O -0.331 6.331 24 C -0.079 4.079 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.018 0.982 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.159 0.841 41 H 0.140 0.860 42 H 0.189 0.811 43 H 0.067 0.933 44 H 0.113 0.887 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.986 -14.595 8.286 16.900 hybrid contribution -0.835 0.602 -0.985 1.425 sum 1.152 -13.994 7.300 15.825 Atomic orbital electron populations 1.21700 0.95428 1.01084 1.01424 1.21543 0.96189 0.93221 1.03362 1.24004 0.97162 0.96484 0.95091 1.22072 0.91769 0.92039 0.99415 1.62506 1.57252 1.03660 1.02048 1.20547 0.94046 0.88094 0.94367 1.21039 1.34258 1.06109 0.92476 0.91450 1.25750 0.95106 0.94878 1.03010 1.70066 1.37175 1.10349 1.37515 0.85664 0.79070 0.77569 0.80278 1.19920 1.20866 1.18638 1.21585 1.00670 0.93904 0.89585 1.19734 0.94465 0.95130 0.99271 1.22090 0.99270 0.95388 0.99611 1.21331 0.98973 0.94690 0.99262 1.21439 0.92289 1.00767 0.99708 1.21382 0.99593 0.93561 0.99618 1.21170 0.96900 0.96283 0.99233 1.26971 0.90625 1.03398 0.90653 1.89545 1.34452 1.90879 1.18250 1.25857 0.91447 0.98476 0.92111 0.94521 0.91257 0.93377 0.91624 0.88938 0.92245 0.89893 0.94922 0.98243 0.92522 0.90767 0.93136 0.84658 0.84392 0.83770 0.84093 0.85973 0.81088 0.93278 0.88681 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 8.63 71.98 0.62 -3.36 16 2 C -0.11 -3.09 5.04 30.59 0.15 -2.93 16 3 C -0.13 -4.54 0.69 -51.48 -0.04 -4.58 16 4 C 0.08 2.82 4.55 86.30 0.39 3.21 16 5 N -0.53 -21.80 5.04 -905.38 -4.56 -26.35 16 6 C 0.15 7.67 3.87 85.56 0.33 8.00 16 7 C -0.50 -26.13 5.54 25.60 0.14 -25.99 16 8 H 0.07 3.47 6.18 -2.91 -0.02 3.45 16 9 C 0.01 0.73 4.89 84.65 0.41 1.15 16 10 N -0.91 -52.41 13.29 21.45 0.28 -52.12 16 11 Si 0.95 42.39 29.54 68.60 2.03 44.41 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 14 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 15 C 0.07 2.40 5.20 85.56 0.45 2.84 16 16 C -0.09 -2.47 3.29 -19.86 -0.07 -2.53 16 17 C -0.15 -3.83 5.61 22.27 0.12 -3.70 16 18 C -0.12 -2.63 8.77 22.27 0.20 -2.43 16 19 C -0.12 -2.34 10.05 22.27 0.22 -2.11 16 20 C -0.12 -2.53 10.05 22.27 0.22 -2.31 16 21 C -0.12 -2.98 9.50 22.27 0.21 -2.77 16 22 C -0.04 -1.92 6.93 72.30 0.50 -1.42 16 23 O -0.41 -18.74 10.53 -148.98 -1.57 -20.31 16 24 C 0.00 -0.18 4.17 72.30 0.30 0.12 16 25 H 0.04 1.20 6.53 -2.39 -0.02 1.18 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.42 6.53 -2.38 -0.02 1.40 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.09 2.35 4.44 -2.39 -0.01 2.34 16 30 H 0.06 2.43 6.48 -2.39 -0.02 2.42 16 31 H 0.08 2.81 5.27 -2.39 -0.01 2.80 16 32 H 0.03 1.73 2.89 -2.39 -0.01 1.72 16 33 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.07 2.50 8.09 -2.39 -0.02 2.48 16 36 H 0.05 1.83 4.91 -2.39 -0.01 1.82 16 37 H 0.14 3.78 2.69 -2.91 -0.01 3.77 16 38 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.12 3.01 8.06 -2.91 -0.02 2.99 16 42 H 0.17 8.70 1.86 -37.27 -0.07 8.63 16 43 H 0.05 2.11 7.33 -2.39 -0.02 2.09 16 44 H 0.10 3.15 4.71 -2.39 -0.01 3.14 16 45 H 0.11 4.58 1.89 -2.39 0.00 4.57 16 Total: -1.00 -60.02 311.27 1.33 -58.69 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 0.96 Total: 34.50 kcal Atomic # 6 Polarization: -43.00 SS G_CDS: 4.18 Total: -38.82 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -4.27 Total: -78.48 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -1.57 Total: -20.31 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -60.02 1.33 -58.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202912648.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.672 kcal (2) G-P(sol) polarization free energy of solvation -60.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds