Wall clock time and date at job start Tue Mar 31 2020 05:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.54378 * 2 1 4 4 N 1.46500 * 109.47201 * 300.28673 * 3 2 1 5 5 C 1.36943 * 119.99463 * 264.84617 * 4 3 2 6 6 H 1.08007 * 119.99665 * 142.33898 * 5 4 3 7 7 C 1.38803 * 120.00115 * 322.33111 * 5 4 3 8 8 N 1.31622 * 120.00609 * 341.44387 * 7 5 4 9 9 Si 1.86801 * 119.99994 * 161.44600 * 7 5 4 10 10 H 1.48506 * 109.47113 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47643 * 119.99879 * 9 7 5 12 12 H 1.48507 * 109.47172 * 240.00320 * 9 7 5 13 13 C 1.46496 * 120.00402 * 84.84046 * 4 3 2 14 14 C 1.50704 * 109.46794 * 95.69785 * 13 4 3 15 15 C 1.38234 * 120.00133 * 274.09821 * 14 13 4 16 16 C 1.38230 * 120.00275 * 179.76717 * 15 14 13 17 17 C 1.38236 * 119.99692 * 0.50660 * 16 15 14 18 18 C 1.38236 * 120.00216 * 359.74884 * 17 16 15 19 19 C 1.38235 * 119.99776 * 359.97438 * 18 17 16 20 20 C 1.53175 * 109.53502 * 239.73438 * 2 1 3 21 21 C 1.53079 * 109.16578 * 297.10139 * 20 2 1 22 22 O 1.42913 * 109.42329 * 302.40540 * 21 20 2 23 23 C 1.42897 * 114.09671 * 61.15306 * 22 21 20 24 24 C 1.53094 * 109.41490 * 298.84278 * 23 22 21 25 25 H 1.09000 * 109.46860 * 306.49282 * 1 2 3 26 26 H 1.08996 * 109.46646 * 66.48967 * 1 2 3 27 27 H 1.09000 * 109.46748 * 186.49277 * 1 2 3 28 28 H 1.09004 * 109.47329 * 60.28264 * 3 2 1 29 29 H 1.09006 * 109.47304 * 180.28359 * 3 2 1 30 30 H 0.96994 * 120.00622 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47611 * 215.69641 * 13 4 3 32 32 H 1.08999 * 109.47088 * 335.70156 * 13 4 3 33 33 H 1.07999 * 119.99743 * 0.02562 * 15 14 13 34 34 H 1.07998 * 120.00926 * 180.23261 * 16 15 14 35 35 H 1.07999 * 120.00385 * 179.72187 * 17 16 15 36 36 H 1.08002 * 120.00090 * 179.97438 * 18 17 16 37 37 H 1.07999 * 120.00086 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.51599 * 177.19558 * 20 2 1 39 39 H 1.09008 * 109.53041 * 57.01038 * 20 2 1 40 40 H 1.09000 * 109.48337 * 182.42124 * 21 20 2 41 41 H 1.09000 * 109.48755 * 62.39210 * 21 20 2 42 42 H 1.09000 * 109.48198 * 58.82583 * 23 22 21 43 43 H 1.08997 * 109.47808 * 178.85124 * 23 22 21 44 44 H 1.08995 * 109.52334 * 177.51481 * 24 23 22 45 45 H 1.08995 * 109.52284 * 297.64217 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4418 0.0000 4 7 1.5488 2.1351 -1.1927 5 6 2.3301 2.2065 -2.3151 6 1 1.8786 2.1284 -3.2932 7 6 3.7021 2.3794 -2.1958 8 7 4.2130 2.8339 -1.0711 9 14 4.8238 1.9670 -3.6315 10 1 4.0084 1.4774 -4.7720 11 1 5.5699 3.1835 -4.0422 12 1 5.7848 0.9116 -3.2217 13 6 0.2200 2.7518 -1.1847 14 6 0.3472 4.2146 -0.8456 15 6 0.3771 4.6177 0.4764 16 6 0.4986 5.9590 0.7875 17 6 0.5797 6.8983 -0.2235 18 6 0.5444 6.4959 -1.5455 19 6 0.4287 5.1540 -1.8565 20 6 2.0422 -0.7276 -1.2468 21 6 1.5895 -2.1891 -1.1974 22 8 2.0736 -2.7963 0.0023 23 6 1.5895 -2.1872 1.2009 24 6 2.0424 -0.7256 1.2480 25 1 -0.3633 0.6112 0.8262 26 1 -0.3632 0.4099 -0.9423 27 1 -0.3633 -1.0211 0.1162 28 1 1.6833 1.9547 0.8925 29 1 3.1319 1.4405 -0.0051 30 1 5.1717 2.9551 -0.9879 31 1 -0.2360 2.6453 -2.1690 32 1 -0.4048 2.2591 -0.4397 33 1 0.3097 3.8841 1.2661 34 1 0.5258 6.2736 1.8202 35 1 0.6701 7.9468 0.0195 36 1 0.6074 7.2298 -2.3353 37 1 0.4007 4.8395 -2.8893 38 1 3.1311 -0.6842 -1.2722 39 1 1.6369 -0.2507 -2.1393 40 1 1.9873 -2.7223 -2.0608 41 1 0.5005 -2.2331 -1.2131 42 1 0.5004 -2.2310 1.2167 43 1 1.9872 -2.7192 2.0652 44 1 1.6373 -0.2472 2.1396 45 1 3.1312 -0.6824 1.2742 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208077039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:54 Heat of formation + Delta-G solvation = -10.221582 kcal Electronic energy + Delta-G solvation = -24480.794723 eV Core-core repulsion = 21270.340095 eV Total energy + Delta-G solvation = -3210.454629 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.45994 -38.43680 -36.18325 -33.63523 -31.95589 -30.61194 -30.16796 -29.81448 -27.38784 -26.49769 -25.30030 -23.10579 -22.87934 -21.82445 -21.23047 -19.99669 -18.01471 -16.69761 -16.16217 -15.55674 -15.50886 -14.83897 -14.51854 -14.39243 -14.33770 -14.20756 -13.62200 -13.31240 -13.16652 -12.75000 -12.66608 -12.33521 -11.92301 -11.78003 -11.55431 -11.39160 -10.94203 -10.88478 -10.83542 -10.74957 -10.61863 -10.56703 -10.25888 -10.04105 -9.97990 -9.93462 -9.55142 -9.46933 -8.86084 -8.48602 -8.18085 -7.94696 -6.56784 -5.80299 -3.37173 2.13641 2.15302 3.33069 3.42925 3.42964 4.29330 4.41559 4.57719 5.17224 5.33548 5.39527 5.48746 5.53143 5.55138 5.56544 5.64094 5.70909 5.78978 5.84578 5.88141 5.92418 5.99854 6.12962 6.14959 6.19640 6.25839 6.36589 6.41170 6.47612 6.59628 6.62117 6.63216 6.78642 6.80625 6.93986 6.98751 7.08769 7.16450 7.20177 7.27334 7.52044 7.62727 7.70520 7.76801 7.79902 8.49933 9.17056 9.77758 10.36520 11.19749 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.006598 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.922216 B = 4242.382157 C = 5526.925068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 C 0.163 3.837 4 N -0.566 5.566 5 C -0.252 4.252 6 H 0.060 0.940 7 C 0.019 3.981 8 N -0.881 5.881 9 Si 0.889 3.111 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.287 1.287 13 C 0.169 3.831 14 C -0.068 4.068 15 C -0.112 4.112 16 C -0.126 4.126 17 C -0.144 4.144 18 C -0.126 4.126 19 C -0.102 4.102 20 C -0.124 4.124 21 C 0.056 3.944 22 O -0.391 6.391 23 C 0.063 3.937 24 C -0.143 4.143 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.019 0.981 29 H 0.097 0.903 30 H 0.253 0.747 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.045 0.955 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.887 -2.432 3.320 8.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.082 4.082 3 C 0.037 3.963 4 N -0.284 5.284 5 C -0.382 4.382 6 H 0.078 0.922 7 C -0.182 4.182 8 N -0.522 5.522 9 Si 0.718 3.282 10 H -0.200 1.200 11 H -0.218 1.218 12 H -0.214 1.214 13 C 0.043 3.957 14 C -0.071 4.071 15 C -0.131 4.131 16 C -0.144 4.144 17 C -0.162 4.162 18 C -0.144 4.144 19 C -0.122 4.122 20 C -0.162 4.162 21 C -0.020 4.020 22 O -0.310 6.310 23 C -0.014 4.014 24 C -0.181 4.181 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.115 0.885 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.081 0.919 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.580 -2.583 3.346 8.679 hybrid contribution 0.796 0.338 -0.614 1.060 sum -6.784 -2.244 2.732 7.650 Atomic orbital electron populations 1.22022 0.96281 0.99523 1.01626 1.21228 0.94526 0.99230 0.93249 1.20942 1.01920 0.86250 0.87184 1.43856 1.14232 1.57803 1.12546 1.18980 0.88360 1.44797 0.86053 0.92231 1.25171 0.98351 0.98279 0.96445 1.69968 1.11546 1.44902 1.25832 0.86450 0.81160 0.77841 0.82715 1.20022 1.21758 1.21400 1.20268 0.89799 0.86861 0.98807 1.21025 0.95152 0.98328 0.92623 1.20867 1.00983 0.95066 0.96166 1.20940 1.01577 0.93675 0.98232 1.20850 1.03622 0.98488 0.93254 1.20995 1.01352 0.96086 0.95938 1.20934 0.99762 0.92420 0.99035 1.22018 1.01577 0.92894 0.99666 1.22734 0.97582 0.95061 0.86615 1.87844 1.72265 1.56844 1.14092 1.22534 0.97740 0.93749 0.87334 1.22167 1.01784 0.95294 0.98866 0.93758 0.91831 0.94407 0.96229 0.88490 0.93645 0.93645 0.92823 0.87414 0.87465 0.87532 0.87407 0.86901 0.91814 0.89334 0.90020 0.93884 0.93640 0.90080 0.91860 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 6.40 37.16 0.24 -1.93 16 2 C -0.08 -1.42 0.60 -154.32 -0.09 -1.52 16 3 C 0.16 3.51 4.34 -4.04 -0.02 3.49 16 4 N -0.57 -12.56 1.97 -174.61 -0.34 -12.91 16 5 C -0.25 -6.26 7.83 -15.06 -0.12 -6.37 16 6 H 0.06 1.50 7.90 -52.48 -0.41 1.09 16 7 C 0.02 0.48 4.98 -17.43 -0.09 0.40 16 8 N -0.88 -24.36 11.37 55.49 0.63 -23.73 16 9 Si 0.89 20.95 29.59 -169.99 -5.03 15.92 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.17 3.31 4.58 -5.19 -0.02 3.28 16 14 C -0.07 -1.36 5.42 -104.62 -0.57 -1.93 16 15 C -0.11 -2.13 9.72 -39.59 -0.38 -2.51 16 16 C -0.13 -2.20 10.05 -39.59 -0.40 -2.60 16 17 C -0.14 -2.44 10.05 -39.58 -0.40 -2.84 16 18 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 19 C -0.10 -2.00 9.68 -39.58 -0.38 -2.38 16 20 C -0.12 -2.31 4.31 -26.60 -0.11 -2.42 16 21 C 0.06 0.91 6.57 37.20 0.24 1.15 16 22 O -0.39 -6.61 10.77 -35.23 -0.38 -6.99 16 23 C 0.06 0.92 6.57 37.21 0.24 1.17 16 24 C -0.14 -2.30 4.92 -26.59 -0.13 -2.43 16 25 H 0.04 0.67 7.70 -51.93 -0.40 0.27 16 26 H 0.06 1.05 6.31 -51.93 -0.33 0.72 16 27 H 0.04 0.54 5.04 -51.93 -0.26 0.28 16 28 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 29 H 0.10 2.45 5.48 -51.93 -0.28 2.17 16 30 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.05 0.87 8.00 -51.93 -0.42 0.46 16 32 H 0.05 0.96 5.57 -51.93 -0.29 0.67 16 33 H 0.11 1.93 8.05 -52.49 -0.42 1.51 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.11 2.14 8.06 -52.49 -0.42 1.71 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.09 1.77 6.81 -51.92 -0.35 1.42 16 40 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.04 0.64 6.75 -51.93 -0.35 0.29 16 42 H 0.05 0.62 6.46 -51.93 -0.34 0.28 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -27.58 344.49 -9.53 -37.11 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.22 Total: 5.48 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -2.39 Total: -20.08 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.29 Total: -36.64 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.38 Total: -6.99 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.58 -9.53 -37.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208077039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.890 kcal (2) G-P(sol) polarization free energy of solvation -27.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds