Wall clock time and date at job start Tue Mar 31 2020 05:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.54378 * 2 1 4 4 N 1.46500 * 109.47201 * 300.28673 * 3 2 1 5 5 C 1.36943 * 119.99463 * 264.84617 * 4 3 2 6 6 H 1.08007 * 119.99665 * 142.33898 * 5 4 3 7 7 C 1.38803 * 120.00115 * 322.33111 * 5 4 3 8 8 N 1.31622 * 120.00609 * 341.44387 * 7 5 4 9 9 Si 1.86801 * 119.99994 * 161.44600 * 7 5 4 10 10 H 1.48506 * 109.47113 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47643 * 119.99879 * 9 7 5 12 12 H 1.48507 * 109.47172 * 240.00320 * 9 7 5 13 13 C 1.46496 * 120.00402 * 84.84046 * 4 3 2 14 14 C 1.50704 * 109.46794 * 95.69785 * 13 4 3 15 15 C 1.38234 * 120.00133 * 274.09821 * 14 13 4 16 16 C 1.38230 * 120.00275 * 179.76717 * 15 14 13 17 17 C 1.38236 * 119.99692 * 0.50660 * 16 15 14 18 18 C 1.38236 * 120.00216 * 359.74884 * 17 16 15 19 19 C 1.38235 * 119.99776 * 359.97438 * 18 17 16 20 20 C 1.53175 * 109.53502 * 239.73438 * 2 1 3 21 21 C 1.53079 * 109.16578 * 297.10139 * 20 2 1 22 22 O 1.42913 * 109.42329 * 302.40540 * 21 20 2 23 23 C 1.42897 * 114.09671 * 61.15306 * 22 21 20 24 24 C 1.53094 * 109.41490 * 298.84278 * 23 22 21 25 25 H 1.09000 * 109.46860 * 306.49282 * 1 2 3 26 26 H 1.08996 * 109.46646 * 66.48967 * 1 2 3 27 27 H 1.09000 * 109.46748 * 186.49277 * 1 2 3 28 28 H 1.09004 * 109.47329 * 60.28264 * 3 2 1 29 29 H 1.09006 * 109.47304 * 180.28359 * 3 2 1 30 30 H 0.96994 * 120.00622 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47611 * 215.69641 * 13 4 3 32 32 H 1.08999 * 109.47088 * 335.70156 * 13 4 3 33 33 H 1.07999 * 119.99743 * 0.02562 * 15 14 13 34 34 H 1.07998 * 120.00926 * 180.23261 * 16 15 14 35 35 H 1.07999 * 120.00385 * 179.72187 * 17 16 15 36 36 H 1.08002 * 120.00090 * 179.97438 * 18 17 16 37 37 H 1.07999 * 120.00086 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.51599 * 177.19558 * 20 2 1 39 39 H 1.09008 * 109.53041 * 57.01038 * 20 2 1 40 40 H 1.09000 * 109.48337 * 182.42124 * 21 20 2 41 41 H 1.09000 * 109.48755 * 62.39210 * 21 20 2 42 42 H 1.09000 * 109.48198 * 58.82583 * 23 22 21 43 43 H 1.08997 * 109.47808 * 178.85124 * 23 22 21 44 44 H 1.08995 * 109.52334 * 177.51481 * 24 23 22 45 45 H 1.08995 * 109.52284 * 297.64217 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4418 0.0000 4 7 1.5488 2.1351 -1.1927 5 6 2.3301 2.2065 -2.3151 6 1 1.8786 2.1284 -3.2932 7 6 3.7021 2.3794 -2.1958 8 7 4.2130 2.8339 -1.0711 9 14 4.8238 1.9670 -3.6315 10 1 4.0084 1.4774 -4.7720 11 1 5.5699 3.1835 -4.0422 12 1 5.7848 0.9116 -3.2217 13 6 0.2200 2.7518 -1.1847 14 6 0.3472 4.2146 -0.8456 15 6 0.3771 4.6177 0.4764 16 6 0.4986 5.9590 0.7875 17 6 0.5797 6.8983 -0.2235 18 6 0.5444 6.4959 -1.5455 19 6 0.4287 5.1540 -1.8565 20 6 2.0422 -0.7276 -1.2468 21 6 1.5895 -2.1891 -1.1974 22 8 2.0736 -2.7963 0.0023 23 6 1.5895 -2.1872 1.2009 24 6 2.0424 -0.7256 1.2480 25 1 -0.3633 0.6112 0.8262 26 1 -0.3632 0.4099 -0.9423 27 1 -0.3633 -1.0211 0.1162 28 1 1.6833 1.9547 0.8925 29 1 3.1319 1.4405 -0.0051 30 1 5.1717 2.9551 -0.9879 31 1 -0.2360 2.6453 -2.1690 32 1 -0.4048 2.2591 -0.4397 33 1 0.3097 3.8841 1.2661 34 1 0.5258 6.2736 1.8202 35 1 0.6701 7.9468 0.0195 36 1 0.6074 7.2298 -2.3353 37 1 0.4007 4.8395 -2.8893 38 1 3.1311 -0.6842 -1.2722 39 1 1.6369 -0.2507 -2.1393 40 1 1.9873 -2.7223 -2.0608 41 1 0.5005 -2.2331 -1.2131 42 1 0.5004 -2.2310 1.2167 43 1 1.9872 -2.7192 2.0652 44 1 1.6373 -0.2472 2.1396 45 1 3.1312 -0.6824 1.2742 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208077039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:53 Heat of formation + Delta-G solvation = -22.926011 kcal Electronic energy + Delta-G solvation = -24481.345629 eV Core-core repulsion = 21270.340095 eV Total energy + Delta-G solvation = -3211.005534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85257 -39.85559 -37.73963 -35.17443 -33.72525 -31.94235 -31.58366 -31.42633 -28.81034 -28.02877 -27.03503 -24.55486 -24.27106 -23.27688 -22.75130 -21.56592 -19.43853 -18.52490 -17.59578 -16.95352 -16.82400 -16.54400 -15.99844 -15.88759 -15.84800 -15.63117 -15.24071 -14.83865 -14.58453 -14.30305 -14.11246 -13.75433 -13.40323 -13.30236 -13.06260 -12.82514 -12.68185 -12.52182 -12.47607 -12.30565 -12.08034 -12.05299 -11.84831 -11.67515 -11.59592 -11.45754 -11.01353 -10.92003 -10.42997 -10.21857 -9.61030 -9.40984 -8.44686 -7.75913 -5.34995 0.70461 0.71786 1.40401 1.46195 1.52056 2.51485 3.07009 3.08829 3.33523 3.79288 3.99789 4.13595 4.14523 4.18114 4.25829 4.30284 4.35756 4.40732 4.45065 4.51994 4.60343 4.65997 4.77314 4.83034 4.86956 4.91718 4.95514 5.02368 5.05846 5.08684 5.14680 5.24160 5.36513 5.37432 5.42577 5.47030 5.64142 5.70333 5.74425 5.76523 5.79581 5.93935 6.03660 6.36084 6.37588 6.53706 7.24829 7.92990 8.45726 9.19653 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.006598 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.922216 B = 4242.382157 C = 5526.925068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.076 4.076 3 C 0.170 3.830 4 N -0.574 5.574 5 C -0.237 4.237 6 H 0.054 0.946 7 C -0.026 4.026 8 N -0.913 5.913 9 Si 0.934 3.066 10 H -0.265 1.265 11 H -0.299 1.299 12 H -0.296 1.296 13 C 0.172 3.828 14 C -0.091 4.091 15 C -0.127 4.127 16 C -0.131 4.131 17 C -0.143 4.143 18 C -0.132 4.132 19 C -0.125 4.125 20 C -0.117 4.117 21 C 0.063 3.937 22 O -0.406 6.406 23 C 0.064 3.936 24 C -0.140 4.140 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.014 0.986 29 H 0.057 0.943 30 H 0.245 0.755 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.026 0.974 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.749 -2.648 4.084 10.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.078 4.078 3 C 0.044 3.956 4 N -0.293 5.293 5 C -0.368 4.368 6 H 0.072 0.928 7 C -0.223 4.223 8 N -0.557 5.557 9 Si 0.764 3.236 10 H -0.189 1.189 11 H -0.226 1.226 12 H -0.223 1.223 13 C 0.047 3.953 14 C -0.094 4.094 15 C -0.146 4.146 16 C -0.149 4.149 17 C -0.162 4.162 18 C -0.150 4.150 19 C -0.144 4.144 20 C -0.155 4.155 21 C -0.013 4.013 22 O -0.326 6.326 23 C -0.013 4.013 24 C -0.178 4.178 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.131 0.869 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.149 0.851 37 H 0.126 0.874 38 H 0.044 0.956 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.121 0.879 44 H 0.098 0.902 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.473 -2.804 4.101 10.696 hybrid contribution 1.302 0.487 -0.817 1.612 sum -8.171 -2.318 3.284 9.106 Atomic orbital electron populations 1.21914 0.93986 1.01083 1.01561 1.21089 0.96227 0.96679 0.93840 1.20762 0.99585 0.88556 0.86657 1.43907 1.14641 1.58733 1.11971 1.19063 0.88545 1.42418 0.86725 0.92821 1.25615 0.99481 0.99386 0.97860 1.70099 1.10889 1.47371 1.27358 0.85723 0.79783 0.76881 0.81249 1.18908 1.22613 1.22299 1.20280 0.88402 0.87171 0.99430 1.21097 0.96464 0.98376 0.93441 1.21060 1.01437 0.96236 0.95879 1.21323 1.00461 0.93115 0.99959 1.21282 1.01987 1.00166 0.92727 1.21331 1.00563 0.95816 0.97308 1.21094 1.00841 0.93562 0.98864 1.21887 0.99044 0.95235 0.99350 1.22693 0.98727 0.92861 0.87044 1.87838 1.72895 1.57019 1.14807 1.22697 0.99036 0.92292 0.87242 1.22140 1.00329 0.96840 0.98534 0.92832 0.92702 0.92160 0.96803 0.92497 0.94599 0.93651 0.90938 0.86943 0.84749 0.84307 0.85061 0.87360 0.95551 0.91123 0.89090 0.91759 0.91532 0.87858 0.90206 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 6.40 71.98 0.46 -3.29 16 2 C -0.08 -2.67 0.60 -52.06 -0.03 -2.70 16 3 C 0.17 7.47 4.34 86.38 0.38 7.84 16 4 N -0.57 -25.85 1.97 -706.34 -1.39 -27.24 16 5 C -0.24 -12.03 7.83 84.03 0.66 -11.37 16 6 H 0.05 2.76 7.90 -2.91 -0.02 2.74 16 7 C -0.03 -1.40 4.98 84.86 0.42 -0.97 16 8 N -0.91 -52.52 11.37 21.65 0.25 -52.27 16 9 Si 0.93 44.40 29.59 68.60 2.03 46.43 16 10 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 12 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 13 C 0.17 6.73 4.58 85.64 0.39 7.13 16 14 C -0.09 -3.61 5.42 -19.86 -0.11 -3.72 16 15 C -0.13 -4.72 9.72 22.27 0.22 -4.50 16 16 C -0.13 -4.29 10.05 22.27 0.22 -4.07 16 17 C -0.14 -4.52 10.05 22.27 0.22 -4.30 16 18 C -0.13 -4.49 10.05 22.27 0.22 -4.27 16 19 C -0.12 -4.83 9.68 22.27 0.22 -4.61 16 20 C -0.12 -4.39 4.31 30.68 0.13 -4.26 16 21 C 0.06 1.92 6.57 72.01 0.47 2.39 16 22 O -0.41 -12.88 10.77 -148.98 -1.60 -14.48 16 23 C 0.06 1.67 6.57 72.01 0.47 2.15 16 24 C -0.14 -4.36 4.92 30.69 0.15 -4.21 16 25 H 0.05 1.47 7.70 -2.39 -0.02 1.45 16 26 H 0.05 1.70 6.31 -2.39 -0.02 1.69 16 27 H 0.06 1.50 5.04 -2.39 -0.01 1.49 16 28 H 0.01 0.60 8.10 -2.38 -0.02 0.58 16 29 H 0.06 3.02 5.48 -2.38 -0.01 3.00 16 30 H 0.24 13.94 8.31 -92.71 -0.77 13.17 16 31 H 0.05 1.75 8.00 -2.39 -0.02 1.73 16 32 H 0.07 2.51 5.57 -2.39 -0.01 2.49 16 33 H 0.11 3.94 8.05 -2.91 -0.02 3.92 16 34 H 0.13 3.61 8.06 -2.91 -0.02 3.58 16 35 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 36 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 37 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 38 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 2.86 6.81 -2.38 -0.02 2.84 16 40 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.06 1.70 6.75 -2.39 -0.02 1.69 16 42 H 0.07 1.51 6.46 -2.39 -0.02 1.49 16 43 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -60.91 344.49 4.74 -56.17 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.95 Total: 24.16 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 4.50 Total: -32.76 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -1.14 Total: -79.51 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -1.60 Total: -14.48 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -60.91 4.74 -56.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208077039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.240 kcal (2) G-P(sol) polarization free energy of solvation -60.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds