Wall clock time and date at job start Tue Mar 31 2020 06:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 C 1.50706 * 109.47030 * 120.00319 * 2 1 3 5 5 C 1.38234 * 120.00196 * 120.00088 * 4 2 1 6 6 C 1.38235 * 119.99814 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00309 * 179.97438 * 7 6 5 9 9 O 1.42902 * 109.47347 * 89.99769 * 8 7 6 10 10 C 1.42894 * 114.00137 * 180.02562 * 9 8 7 11 11 H 1.08998 * 110.88802 * 26.11820 * 10 9 8 12 12 C 1.55150 * 111.00545 * 150.00227 * 10 9 8 13 13 C 1.54327 * 102.94639 * 153.57626 * 12 10 9 14 14 N 1.47022 * 107.26734 * 337.80549 * 13 12 10 15 15 C 1.36935 * 125.64826 * 178.98460 * 14 13 12 16 16 H 1.08002 * 120.00142 * 179.97438 * 15 14 13 17 17 C 1.38810 * 120.00097 * 359.97438 * 15 14 13 18 18 N 1.31629 * 119.99944 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00259 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47077 * 90.00349 * 19 17 15 21 21 H 1.48505 * 109.47058 * 210.00023 * 19 17 15 22 22 H 1.48496 * 109.46964 * 330.00097 * 19 17 15 23 23 C 1.47423 * 108.70563 * 358.94517 * 14 13 12 24 24 C 1.38243 * 120.00092 * 359.97438 * 7 6 5 25 25 C 1.38234 * 119.99618 * 359.97438 * 24 7 6 26 26 H 1.09004 * 109.47334 * 299.99945 * 1 2 3 27 27 H 1.09001 * 109.47441 * 59.99583 * 1 2 3 28 28 H 1.08994 * 109.47514 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46790 * 239.99929 * 2 1 3 30 30 H 1.09004 * 109.47360 * 60.00072 * 3 2 1 31 31 H 1.08994 * 109.47197 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.46972 * 300.00052 * 3 2 1 33 33 H 1.08000 * 119.99516 * 0.24808 * 5 4 2 34 34 H 1.08000 * 119.99297 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47255 * 210.00399 * 8 7 6 36 36 H 1.09001 * 109.46747 * 329.99788 * 8 7 6 37 37 H 1.09004 * 110.72420 * 271.94258 * 12 10 9 38 38 H 1.08998 * 110.71980 * 35.21047 * 12 10 9 39 39 H 1.08998 * 109.88341 * 97.22270 * 13 12 10 40 40 H 1.09000 * 109.88132 * 218.39494 * 13 12 10 41 41 H 0.97000 * 120.00025 * 179.97438 * 18 17 15 42 42 H 1.09000 * 110.36407 * 265.28661 * 23 14 13 43 43 H 1.09000 * 110.37175 * 142.96565 * 23 14 13 44 44 H 1.07999 * 120.00235 * 179.97438 * 24 7 6 45 45 H 1.08005 * 119.99804 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8270 -1.8344 1.1036 6 6 3.2882 -2.4858 2.2323 7 6 2.9551 -2.0129 3.4878 8 6 3.4573 -2.7233 4.7183 9 8 4.7167 -2.1709 5.1066 10 6 5.2839 -2.7777 6.2693 11 1 4.9287 -3.8016 6.3859 12 6 6.8339 -2.7289 6.2222 13 6 7.2262 -2.7555 7.7145 14 7 6.0643 -2.2803 8.4798 15 6 5.9964 -2.1728 9.8432 16 1 5.0933 -1.8107 10.3121 17 6 7.0882 -2.5293 10.6228 18 7 8.1890 -2.9701 10.0514 19 14 6.9959 -2.3819 12.4827 20 1 6.4866 -3.6539 13.0553 21 1 8.3498 -2.1021 13.0248 22 1 6.0780 -1.2727 12.8463 23 6 4.9847 -1.9379 7.5361 24 6 2.1612 -0.8884 3.6147 25 6 1.7009 -0.2364 2.4860 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1299 1.4424 0.0005 32 1 1.6767 1.9562 -0.8899 33 1 3.0912 -2.2010 0.1227 34 1 3.9088 -3.3641 2.1332 35 1 2.7397 -2.5973 5.5290 36 1 3.5775 -3.7848 4.5013 37 1 7.2318 -3.6010 5.7032 38 1 7.1766 -1.8083 5.7498 39 1 7.4763 -3.7733 8.0140 40 1 8.0775 -2.0967 7.8859 41 1 8.9521 -3.2189 10.5961 42 1 5.0101 -0.8739 7.3006 43 1 4.0154 -2.2119 7.9528 44 1 1.9006 -0.5192 4.5956 45 1 1.0803 0.6420 2.5851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222111668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:45 Heat of formation + Delta-G solvation = -10.208300 kcal Electronic energy + Delta-G solvation = -22281.522800 eV Core-core repulsion = 19071.068747 eV Total energy + Delta-G solvation = -3210.454053 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.81940 -38.25830 -36.28783 -35.24987 -32.24300 -31.07078 -30.71128 -29.10605 -27.42556 -27.13610 -25.83143 -24.22079 -23.00338 -22.06074 -20.30437 -20.10582 -19.98135 -16.97362 -16.82300 -16.26683 -15.81493 -15.31137 -14.64840 -14.61871 -14.18820 -14.04914 -13.81958 -13.75818 -13.47230 -13.28080 -12.94531 -12.64057 -12.28196 -12.19788 -12.05947 -11.74412 -11.58975 -11.43807 -11.29007 -10.98479 -10.90715 -10.80485 -10.78917 -10.68200 -10.17515 -10.07721 -9.76307 -9.69915 -9.04859 -8.95610 -8.66916 -8.58275 -6.81839 -5.69622 -3.03589 1.19858 1.36197 3.41247 3.45810 3.48199 3.54398 4.20716 4.42655 4.53054 4.54670 4.86066 4.91396 4.94535 4.98624 5.16322 5.25949 5.33166 5.36353 5.43158 5.44619 5.50459 5.54012 5.57731 5.64500 5.64773 5.70365 5.79499 5.87568 5.91962 5.95319 5.96498 6.03057 6.29640 6.35742 6.50175 6.52346 6.57095 6.60170 6.71467 6.75397 6.93144 7.57103 7.64129 7.65231 7.84421 8.27230 9.23189 9.83340 10.49345 11.42131 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.037634 B = 0.002563 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.833041 B =10922.317155 C =11204.983085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.077 4.077 5 C -0.123 4.123 6 C -0.097 4.097 7 C -0.086 4.086 8 C 0.101 3.899 9 O -0.372 6.372 10 C 0.071 3.929 11 H 0.067 0.933 12 C -0.139 4.139 13 C 0.179 3.821 14 N -0.605 5.605 15 C -0.227 4.227 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.923 5.923 19 Si 0.913 3.087 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.120 3.880 24 C -0.095 4.095 25 C -0.119 4.119 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.252 0.748 42 H 0.028 0.972 43 H 0.037 0.963 44 H 0.124 0.876 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.658 3.118 -20.713 25.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.202 4.202 4 C -0.077 4.077 5 C -0.141 4.141 6 C -0.115 4.115 7 C -0.086 4.086 8 C 0.024 3.976 9 O -0.291 6.291 10 C 0.013 3.987 11 H 0.085 0.915 12 C -0.178 4.178 13 C 0.054 3.946 14 N -0.332 5.332 15 C -0.356 4.356 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.571 5.571 19 Si 0.744 3.256 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.207 1.207 23 C -0.007 4.007 24 C -0.113 4.113 25 C -0.137 4.137 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.142 0.858 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.424 3.235 -20.628 24.823 hybrid contribution -0.045 -0.177 1.183 1.197 sum -13.468 3.058 -19.445 23.851 Atomic orbital electron populations 1.21857 0.94386 1.01980 1.01889 1.20128 0.95899 0.96107 0.95401 1.21861 1.01424 0.95052 1.01872 1.19861 0.97625 0.95582 0.94609 1.21003 0.98743 0.95942 0.98408 1.21049 0.98639 0.99970 0.91817 1.19685 0.98122 0.96635 0.94167 1.21301 0.86855 0.95789 0.93604 1.87962 1.33956 1.61283 1.45912 1.23442 0.94649 0.95735 0.84905 0.91509 1.23005 0.93013 1.01287 1.00451 1.21165 0.90090 0.99592 0.83749 1.44364 1.10490 1.76754 1.01626 1.19066 0.99069 1.37421 0.80000 0.90407 1.24822 0.96089 1.01450 0.98211 1.69965 1.03746 1.49898 1.33448 0.86093 0.76801 0.77701 0.85015 1.21605 1.21642 1.20686 1.21890 0.92510 0.96739 0.89515 1.21091 0.96982 0.94434 0.98824 1.20925 1.00837 1.00077 0.91842 0.92402 0.92477 0.92559 0.90586 0.92370 0.92413 0.92482 0.86217 0.85974 0.92579 0.92812 0.91924 0.91510 0.93383 0.93592 0.93723 0.95470 0.94512 0.85829 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.01 37.16 0.33 -0.63 16 2 C -0.06 -0.44 3.09 -91.77 -0.28 -0.72 16 3 C -0.14 -1.06 9.00 37.16 0.33 -0.72 16 4 C -0.08 -0.77 4.78 -104.62 -0.50 -1.27 16 5 C -0.12 -1.28 9.67 -39.58 -0.38 -1.66 16 6 C -0.10 -1.13 9.70 -39.59 -0.38 -1.52 16 7 C -0.09 -1.12 5.51 -104.63 -0.58 -1.69 16 8 C 0.10 1.41 5.90 36.00 0.21 1.63 16 9 O -0.37 -6.52 10.14 -35.23 -0.36 -6.88 16 10 C 0.07 1.36 3.54 -24.58 -0.09 1.27 16 11 H 0.07 1.22 7.83 -51.93 -0.41 0.81 16 12 C -0.14 -2.80 6.69 -24.90 -0.17 -2.97 16 13 C 0.18 4.49 5.37 -3.06 -0.02 4.48 16 14 N -0.60 -16.07 3.39 -170.07 -0.58 -16.64 16 15 C -0.23 -6.50 10.28 -15.06 -0.15 -6.65 16 16 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 17 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 18 N -0.92 -27.55 10.31 55.49 0.57 -26.97 16 19 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.12 2.65 6.97 -2.53 -0.02 2.64 16 24 C -0.10 -1.15 9.70 -39.58 -0.38 -1.54 16 25 C -0.12 -1.26 8.71 -39.58 -0.34 -1.60 16 26 H 0.06 0.39 7.40 -51.93 -0.38 0.01 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.54 7.88 -51.93 -0.41 0.13 16 30 H 0.06 0.43 7.38 -51.93 -0.38 0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.12 0.99 7.95 -52.49 -0.42 0.58 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 36 H 0.05 0.68 8.06 -51.93 -0.42 0.26 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.05 1.31 7.38 -51.93 -0.38 0.92 16 40 H 0.05 1.27 7.50 -51.93 -0.39 0.88 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 45 H 0.12 1.06 7.10 -52.48 -0.37 0.68 16 LS Contribution 362.10 15.07 5.46 5.46 Total: -1.00 -31.39 362.10 -10.20 -41.59 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -7.76 Total: -2.56 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -2.51 Total: -11.35 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -0.01 Total: -43.62 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.36 Total: -6.88 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.39 -10.20 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222111668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.384 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds