Wall clock time and date at job start Tue Mar 31 2020 06:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 C 1.50706 * 109.47030 * 120.00319 * 2 1 3 5 5 C 1.38234 * 120.00196 * 120.00088 * 4 2 1 6 6 C 1.38235 * 119.99814 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00309 * 179.97438 * 7 6 5 9 9 O 1.42902 * 109.47347 * 89.99769 * 8 7 6 10 10 C 1.42894 * 114.00137 * 180.02562 * 9 8 7 11 11 H 1.08998 * 110.88802 * 26.11820 * 10 9 8 12 12 C 1.55150 * 111.00545 * 150.00227 * 10 9 8 13 13 C 1.54327 * 102.94639 * 153.57626 * 12 10 9 14 14 N 1.47022 * 107.26734 * 337.80549 * 13 12 10 15 15 C 1.36935 * 125.64826 * 178.98460 * 14 13 12 16 16 H 1.08002 * 120.00142 * 179.97438 * 15 14 13 17 17 C 1.38810 * 120.00097 * 359.97438 * 15 14 13 18 18 N 1.31629 * 119.99944 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00259 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47077 * 90.00349 * 19 17 15 21 21 H 1.48505 * 109.47058 * 210.00023 * 19 17 15 22 22 H 1.48496 * 109.46964 * 330.00097 * 19 17 15 23 23 C 1.47423 * 108.70563 * 358.94517 * 14 13 12 24 24 C 1.38243 * 120.00092 * 359.97438 * 7 6 5 25 25 C 1.38234 * 119.99618 * 359.97438 * 24 7 6 26 26 H 1.09004 * 109.47334 * 299.99945 * 1 2 3 27 27 H 1.09001 * 109.47441 * 59.99583 * 1 2 3 28 28 H 1.08994 * 109.47514 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46790 * 239.99929 * 2 1 3 30 30 H 1.09004 * 109.47360 * 60.00072 * 3 2 1 31 31 H 1.08994 * 109.47197 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.46972 * 300.00052 * 3 2 1 33 33 H 1.08000 * 119.99516 * 0.24808 * 5 4 2 34 34 H 1.08000 * 119.99297 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47255 * 210.00399 * 8 7 6 36 36 H 1.09001 * 109.46747 * 329.99788 * 8 7 6 37 37 H 1.09004 * 110.72420 * 271.94258 * 12 10 9 38 38 H 1.08998 * 110.71980 * 35.21047 * 12 10 9 39 39 H 1.08998 * 109.88341 * 97.22270 * 13 12 10 40 40 H 1.09000 * 109.88132 * 218.39494 * 13 12 10 41 41 H 0.97000 * 120.00025 * 179.97438 * 18 17 15 42 42 H 1.09000 * 110.36407 * 265.28661 * 23 14 13 43 43 H 1.09000 * 110.37175 * 142.96565 * 23 14 13 44 44 H 1.07999 * 120.00235 * 179.97438 * 24 7 6 45 45 H 1.08005 * 119.99804 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8270 -1.8344 1.1036 6 6 3.2882 -2.4858 2.2323 7 6 2.9551 -2.0129 3.4878 8 6 3.4573 -2.7233 4.7183 9 8 4.7167 -2.1709 5.1066 10 6 5.2839 -2.7777 6.2693 11 1 4.9287 -3.8016 6.3859 12 6 6.8339 -2.7289 6.2222 13 6 7.2262 -2.7555 7.7145 14 7 6.0643 -2.2803 8.4798 15 6 5.9964 -2.1728 9.8432 16 1 5.0933 -1.8107 10.3121 17 6 7.0882 -2.5293 10.6228 18 7 8.1890 -2.9701 10.0514 19 14 6.9959 -2.3819 12.4827 20 1 6.4866 -3.6539 13.0553 21 1 8.3498 -2.1021 13.0248 22 1 6.0780 -1.2727 12.8463 23 6 4.9847 -1.9379 7.5361 24 6 2.1612 -0.8884 3.6147 25 6 1.7009 -0.2364 2.4860 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1299 1.4424 0.0005 32 1 1.6767 1.9562 -0.8899 33 1 3.0912 -2.2010 0.1227 34 1 3.9088 -3.3641 2.1332 35 1 2.7397 -2.5973 5.5290 36 1 3.5775 -3.7848 4.5013 37 1 7.2318 -3.6010 5.7032 38 1 7.1766 -1.8083 5.7498 39 1 7.4763 -3.7733 8.0140 40 1 8.0775 -2.0967 7.8859 41 1 8.9521 -3.2189 10.5961 42 1 5.0101 -0.8739 7.3006 43 1 4.0154 -2.2119 7.9528 44 1 1.9006 -0.5192 4.5956 45 1 1.0803 0.6420 2.5851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222111668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:44 Heat of formation + Delta-G solvation = -26.136906 kcal Electronic energy + Delta-G solvation = -22282.213516 eV Core-core repulsion = 19071.068747 eV Total energy + Delta-G solvation = -3211.144769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.68801 -39.75302 -37.70832 -36.22612 -34.20736 -31.97316 -31.71373 -30.93629 -28.88067 -27.95475 -27.00499 -26.10783 -23.82667 -22.89803 -22.06900 -21.84978 -20.79566 -18.98886 -18.05365 -17.34454 -16.78538 -16.66374 -16.35157 -15.87508 -15.44374 -15.29980 -14.88966 -14.70839 -14.41096 -14.31000 -14.17806 -13.94878 -13.84314 -13.36834 -13.24381 -12.97538 -12.87705 -12.75136 -12.58507 -12.34660 -12.10106 -12.04079 -12.02951 -11.98228 -11.79134 -11.50964 -11.47240 -11.46029 -10.73654 -10.47705 -9.80500 -9.52312 -8.94826 -7.87267 -5.24545 0.32633 0.51958 1.45475 1.48106 1.56882 2.43358 2.56903 3.08042 3.31509 3.69638 3.76562 3.80967 3.84303 3.97925 4.08620 4.13228 4.14925 4.18165 4.34926 4.42266 4.44300 4.55714 4.60544 4.63474 4.73158 4.76377 4.83335 4.93974 4.98692 5.00887 5.01936 5.05492 5.07405 5.18895 5.20812 5.36429 5.41204 5.41536 5.53482 5.60696 5.70486 5.70608 5.75550 6.10624 6.13820 6.31653 7.06597 7.72454 8.37313 9.23309 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.037634 B = 0.002563 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.833041 B =10922.317155 C =11204.983085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.076 4.076 5 C -0.128 4.128 6 C -0.106 4.106 7 C -0.108 4.108 8 C 0.097 3.903 9 O -0.381 6.381 10 C 0.090 3.910 11 H 0.081 0.919 12 C -0.127 4.127 13 C 0.187 3.813 14 N -0.626 5.626 15 C -0.246 4.246 16 H 0.083 0.917 17 C -0.067 4.067 18 N -0.952 5.952 19 Si 0.984 3.016 20 H -0.283 1.283 21 H -0.293 1.293 22 H -0.269 1.269 23 C 0.116 3.884 24 C -0.110 4.110 25 C -0.124 4.124 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.020 0.980 40 H 0.010 0.990 41 H 0.249 0.751 42 H 0.020 0.980 43 H 0.046 0.954 44 H 0.124 0.876 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.194 3.289 -22.184 27.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.076 4.076 5 C -0.146 4.146 6 C -0.124 4.124 7 C -0.108 4.108 8 C 0.021 3.979 9 O -0.300 6.300 10 C 0.032 3.968 11 H 0.099 0.901 12 C -0.165 4.165 13 C 0.062 3.938 14 N -0.354 5.354 15 C -0.375 4.375 16 H 0.101 0.899 17 C -0.260 4.260 18 N -0.601 5.601 19 Si 0.811 3.189 20 H -0.209 1.209 21 H -0.220 1.220 22 H -0.194 1.194 23 C -0.010 4.010 24 C -0.128 4.128 25 C -0.142 4.142 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.039 0.961 40 H 0.028 0.972 41 H 0.058 0.942 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.142 0.858 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.996 3.415 -22.125 26.946 hybrid contribution 0.364 -0.174 1.546 1.598 sum -14.633 3.241 -20.579 25.458 Atomic orbital electron populations 1.21844 0.93543 1.02004 1.02540 1.20187 0.96541 0.96107 0.94596 1.21860 1.00836 0.94924 1.02538 1.20200 0.96764 0.95328 0.95312 1.21307 0.98366 0.95876 0.99038 1.21248 0.98846 1.00476 0.91797 1.19707 0.99405 0.97513 0.94197 1.21499 0.85300 0.96756 0.94313 1.87947 1.35680 1.61699 1.44693 1.23093 0.93770 0.95707 0.84247 0.90146 1.22838 0.94180 1.02663 0.96817 1.20914 0.89045 0.96911 0.86953 1.44672 1.12086 1.76771 1.01860 1.19476 0.99372 1.37221 0.81429 0.89895 1.25727 0.95794 1.01493 1.02969 1.70184 1.04245 1.50781 1.34870 0.85007 0.76632 0.78027 0.79214 1.20929 1.21952 1.19397 1.22030 0.91734 0.96851 0.90335 1.21241 0.97429 0.94652 0.99507 1.21139 1.00849 1.00440 0.91745 0.92571 0.91063 0.92849 0.89580 0.92636 0.93319 0.90950 0.84077 0.85054 0.92232 0.91255 0.89256 0.91295 0.96126 0.97202 0.94213 0.96199 0.93565 0.85824 0.84708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.01 71.98 0.65 -0.93 16 2 C -0.06 -0.73 3.09 -11.54 -0.04 -0.76 16 3 C -0.14 -1.80 9.00 71.98 0.65 -1.15 16 4 C -0.08 -1.37 4.78 -19.86 -0.09 -1.47 16 5 C -0.13 -2.40 9.67 22.27 0.22 -2.19 16 6 C -0.11 -2.31 9.70 22.27 0.22 -2.10 16 7 C -0.11 -2.69 5.51 -19.87 -0.11 -2.80 16 8 C 0.10 2.58 5.90 71.23 0.42 3.00 16 9 O -0.38 -12.83 10.14 -148.98 -1.51 -14.34 16 10 C 0.09 3.35 3.54 31.98 0.11 3.46 16 11 H 0.08 2.77 7.83 -2.39 -0.02 2.76 16 12 C -0.13 -5.03 6.69 31.78 0.21 -4.81 16 13 C 0.19 9.64 5.37 86.73 0.47 10.10 16 14 N -0.63 -33.79 3.39 -691.98 -2.35 -36.13 16 15 C -0.25 -14.24 10.28 84.03 0.86 -13.38 16 16 H 0.08 4.57 7.83 -2.91 -0.02 4.54 16 17 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 18 N -0.95 -58.36 10.31 21.65 0.22 -58.14 16 19 Si 0.98 46.41 29.55 68.60 2.03 48.44 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 23 C 0.12 5.11 6.97 86.86 0.61 5.71 16 24 C -0.11 -2.58 9.70 22.27 0.22 -2.36 16 25 C -0.12 -2.46 8.71 22.27 0.19 -2.26 16 26 H 0.06 0.64 7.40 -2.38 -0.02 0.62 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.09 0.96 7.88 -2.39 -0.02 0.95 16 30 H 0.05 0.72 7.38 -2.38 -0.02 0.70 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.14 1.96 7.95 -2.91 -0.02 1.94 16 34 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 35 H 0.06 1.52 8.09 -2.39 -0.02 1.50 16 36 H 0.07 1.61 8.06 -2.39 -0.02 1.60 16 37 H 0.09 3.06 8.14 -2.38 -0.02 3.04 16 38 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.02 1.16 7.38 -2.39 -0.02 1.14 16 40 H 0.01 0.56 7.50 -2.39 -0.02 0.55 16 41 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 42 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 45 H 0.14 2.17 7.10 -2.91 -0.02 2.15 16 Total: -1.00 -67.99 362.10 4.37 -63.62 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.93 Total: 11.91 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 5.04 Total: -15.36 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -2.13 Total: -94.27 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -1.51 Total: -14.34 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -67.99 4.37 -63.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222111668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.486 kcal (2) G-P(sol) polarization free energy of solvation -67.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds