Wall clock time and date at job start Tue Mar 31 2020 06:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46556 * 2 1 4 4 C 1.50703 * 109.47016 * 119.99606 * 2 1 3 5 5 C 1.38227 * 120.00137 * 120.00335 * 4 2 1 6 6 C 1.38230 * 120.00339 * 180.02562 * 5 4 2 7 7 C 1.38243 * 120.00057 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00252 * 179.97438 * 7 6 5 9 9 O 1.42895 * 109.47071 * 89.99767 * 8 7 6 10 10 C 1.42904 * 114.00030 * 180.02562 * 9 8 7 11 11 C 1.53513 * 114.16833 * 210.00050 * 10 9 8 12 12 N 1.47484 * 87.93060 * 220.32420 * 11 10 9 13 13 C 1.46895 * 110.99756 * 138.70311 * 12 11 10 14 14 C 1.50706 * 109.47182 * 170.00145 * 13 12 11 15 15 H 1.08000 * 119.99302 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00436 * 179.72677 * 14 13 12 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46683 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47426 * 119.99743 * 18 16 14 21 21 H 1.48501 * 109.46833 * 239.99986 * 18 16 14 22 22 C 1.47477 * 87.83167 * 27.01125 * 12 11 10 23 23 C 1.38237 * 119.99616 * 0.25025 * 7 6 5 24 24 C 1.38235 * 120.00086 * 359.49677 * 23 7 6 25 25 H 1.08998 * 109.47601 * 299.99859 * 1 2 3 26 26 H 1.09000 * 109.46742 * 60.00959 * 1 2 3 27 27 H 1.08999 * 109.46906 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47184 * 239.99813 * 2 1 3 29 29 H 1.08995 * 109.46675 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47099 * 299.99327 * 3 2 1 31 31 H 1.08997 * 109.47527 * 60.00023 * 3 2 1 32 32 H 1.08004 * 119.99859 * 0.02562 * 5 4 2 33 33 H 1.08000 * 120.00645 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.47036 * 329.99976 * 8 7 6 35 35 H 1.08997 * 109.46955 * 209.99734 * 8 7 6 36 36 H 1.09003 * 113.37734 * 343.07418 * 10 9 8 37 37 H 1.09005 * 113.47855 * 105.56295 * 11 10 9 38 38 H 1.08997 * 113.47719 * 335.09320 * 11 10 9 39 39 H 1.09001 * 109.47613 * 50.00491 * 13 12 11 40 40 H 1.08998 * 109.47678 * 290.00386 * 13 12 11 41 41 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 42 42 H 1.09000 * 113.48071 * 87.76093 * 22 12 11 43 43 H 1.09004 * 113.47566 * 218.21901 * 22 12 11 44 44 H 1.08001 * 120.00018 * 179.72890 * 23 7 6 45 45 H 1.07997 * 120.00324 * 180.23010 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8271 -1.8342 1.1038 6 6 3.2874 -2.4861 2.2325 7 6 2.9525 -2.0144 3.4881 8 6 3.4539 -2.7254 4.7186 9 8 4.7124 -2.1724 5.1087 10 6 5.2788 -2.7797 6.2716 11 6 6.1528 -1.8370 7.1106 12 7 7.0888 -2.9608 7.3009 13 6 8.4824 -2.5094 7.1911 14 6 9.4052 -3.6173 7.6296 15 1 8.9971 -4.5623 7.9566 16 6 10.7705 -3.4267 7.6074 17 7 11.2676 -2.2781 7.2031 18 14 11.9144 -4.8001 8.1502 19 1 11.1115 -5.9817 8.5555 20 1 12.8101 -5.1718 7.0257 21 1 12.7308 -4.3384 9.3015 22 6 6.6072 -3.5058 6.0179 23 6 2.1530 -0.8938 3.6148 24 6 1.6970 -0.2389 2.4861 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.0884 -2.2030 0.1229 33 1 3.9080 -3.3644 2.1336 34 1 3.5751 -3.7865 4.5010 35 1 2.7353 -2.6003 5.5285 36 1 4.5588 -3.3561 6.8527 37 1 5.6753 -1.5086 8.0339 38 1 6.5757 -1.0119 6.5375 39 1 8.6333 -1.6377 7.8278 40 1 8.6983 -2.2450 6.1560 41 1 12.2282 -2.1441 7.1871 42 1 7.1514 -3.1262 5.1531 43 1 6.5147 -4.5919 6.0149 44 1 1.8878 -0.5278 4.5957 45 1 1.0755 0.6388 2.5851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222118299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:31 Heat of formation + Delta-G solvation = 2.008628 kcal Electronic energy + Delta-G solvation = -21897.052861 eV Core-core repulsion = 18687.128574 eV Total energy + Delta-G solvation = -3209.924287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.93775 -39.39784 -36.88398 -35.40743 -32.83321 -31.16865 -30.86564 -29.01934 -27.45357 -26.14496 -25.36349 -24.79885 -23.06775 -22.14568 -21.52844 -20.14228 -19.39457 -16.98608 -16.67996 -16.15327 -15.98679 -15.47370 -14.97963 -14.80048 -14.38993 -14.12086 -14.04560 -13.85992 -13.54774 -13.44085 -13.12407 -12.69692 -12.56109 -12.33291 -12.10091 -11.99773 -11.62256 -11.50392 -11.45503 -11.19680 -11.09901 -10.89805 -10.80902 -10.77740 -10.49302 -10.17887 -9.74451 -9.19651 -9.11451 -9.01614 -8.73843 -8.42460 -7.90109 -6.01885 -4.03175 1.13220 1.30452 3.32050 3.38922 3.44198 3.46160 4.08409 4.38694 4.44930 4.49718 4.76531 4.85136 4.88199 4.89118 4.94076 5.01691 5.12909 5.21911 5.26269 5.30377 5.31320 5.33394 5.46206 5.48616 5.51160 5.59929 5.66634 5.87424 5.89011 5.92293 5.92958 5.97217 6.11139 6.20033 6.29270 6.34238 6.42752 6.47614 6.51813 6.61747 6.87028 7.21997 7.45997 7.66736 7.87498 8.11727 8.46563 9.04422 9.60718 11.09303 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030169 B = 0.002400 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.885258 B =11661.479851 C =11937.322465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.145 4.145 4 C -0.075 4.075 5 C -0.122 4.122 6 C -0.095 4.095 7 C -0.090 4.090 8 C 0.101 3.899 9 O -0.368 6.368 10 C 0.050 3.950 11 C -0.003 4.003 12 N -0.464 5.464 13 C 0.161 3.839 14 C -0.504 4.504 15 H 0.064 0.936 16 C 0.053 3.947 17 N -0.900 5.900 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.005 4.005 23 C -0.096 4.096 24 C -0.119 4.119 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.029 0.971 40 H 0.005 0.995 41 H 0.261 0.739 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.122 0.878 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.124 3.867 -13.581 27.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.202 4.202 4 C -0.075 4.075 5 C -0.140 4.140 6 C -0.113 4.113 7 C -0.090 4.090 8 C 0.025 3.975 9 O -0.286 6.286 10 C -0.008 4.008 11 C -0.132 4.132 12 N -0.189 5.189 13 C 0.035 3.965 14 C -0.542 4.542 15 H 0.082 0.918 16 C -0.148 4.148 17 N -0.539 5.539 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.134 4.134 23 C -0.115 4.115 24 C -0.137 4.137 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.023 0.977 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.140 0.860 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -22.841 3.713 -13.086 26.584 hybrid contribution 0.926 -0.318 -0.293 1.022 sum -21.915 3.395 -13.379 25.899 Atomic orbital electron populations 1.21857 0.94363 1.01973 1.01891 1.20141 0.95902 0.96152 0.95420 1.21861 1.01489 0.95001 1.01868 1.19876 0.97445 0.95523 0.94647 1.21030 0.98585 0.95853 0.98522 1.21079 0.98440 0.99964 0.91808 1.19662 0.98333 0.96815 0.94173 1.21321 0.86291 0.96215 0.93702 1.88048 1.34409 1.60490 1.45695 1.24034 0.93890 0.96208 0.86631 1.24046 0.94852 0.95920 0.98372 1.68952 1.06454 1.15953 1.27504 1.20266 0.83162 0.96773 0.96326 1.21139 0.90304 0.99765 1.43036 0.91796 1.25021 0.98310 0.95940 0.95574 1.69973 1.12521 1.23583 1.47860 0.86408 0.80558 0.82077 0.78199 1.19636 1.21074 1.20993 1.24239 0.94184 1.00566 0.94420 1.21047 0.97172 0.94518 0.98716 1.20917 1.00897 1.00055 0.91853 0.92433 0.92435 0.92560 0.90511 0.92363 0.92435 0.92405 0.86107 0.85833 0.92504 0.92626 0.88805 0.90379 0.91300 0.95253 0.97680 0.92960 0.91086 0.90643 0.85968 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.01 37.16 0.33 -0.58 16 2 C -0.06 -0.43 3.09 -91.77 -0.28 -0.71 16 3 C -0.14 -1.03 9.01 37.16 0.33 -0.70 16 4 C -0.07 -0.72 4.78 -104.62 -0.50 -1.22 16 5 C -0.12 -1.24 9.67 -39.59 -0.38 -1.62 16 6 C -0.09 -1.08 9.70 -39.58 -0.38 -1.46 16 7 C -0.09 -1.08 5.51 -104.62 -0.58 -1.65 16 8 C 0.10 1.24 5.91 36.00 0.21 1.46 16 9 O -0.37 -5.87 10.37 -35.23 -0.37 -6.23 16 10 C 0.05 0.83 4.65 -26.21 -0.12 0.71 16 11 C 0.00 -0.05 7.52 -7.55 -0.06 -0.11 16 12 N -0.46 -10.52 6.32 -246.14 -1.55 -12.07 16 13 C 0.16 4.36 4.57 -4.98 -0.02 4.34 16 14 C -0.50 -14.73 9.39 -34.44 -0.32 -15.05 16 15 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 16 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 18 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 22 C 0.00 -0.09 7.55 -7.56 -0.06 -0.15 16 23 C -0.10 -1.06 9.70 -39.58 -0.38 -1.44 16 24 C -0.12 -1.17 8.71 -39.58 -0.34 -1.52 16 25 H 0.06 0.36 7.39 -51.93 -0.38 -0.02 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.53 7.88 -51.93 -0.41 0.12 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.41 7.39 -51.93 -0.38 0.02 16 32 H 0.12 1.00 7.95 -52.48 -0.42 0.59 16 33 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 35 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 36 H 0.09 1.34 7.88 -51.93 -0.41 0.94 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.07 1.36 7.91 -51.93 -0.41 0.95 16 39 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 40 H 0.01 0.15 7.30 -51.93 -0.38 -0.23 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.07 1.49 7.42 -51.93 -0.39 1.11 16 43 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 45 H 0.12 0.96 7.10 -52.49 -0.37 0.59 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -31.91 368.63 -11.04 -42.95 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -7.74 Total: -2.40 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -2.65 Total: -18.28 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.82 Total: -38.70 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.37 Total: -6.23 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.91 -11.04 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222118299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.961 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds