Wall clock time and date at job start Tue Mar 31 2020 06:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46556 * 2 1 4 4 C 1.50703 * 109.47016 * 119.99606 * 2 1 3 5 5 C 1.38227 * 120.00137 * 120.00335 * 4 2 1 6 6 C 1.38230 * 120.00339 * 180.02562 * 5 4 2 7 7 C 1.38243 * 120.00057 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00252 * 179.97438 * 7 6 5 9 9 O 1.42895 * 109.47071 * 89.99767 * 8 7 6 10 10 C 1.42904 * 114.00030 * 180.02562 * 9 8 7 11 11 C 1.53513 * 114.16833 * 210.00050 * 10 9 8 12 12 N 1.47484 * 87.93060 * 220.32420 * 11 10 9 13 13 C 1.46895 * 110.99756 * 138.70311 * 12 11 10 14 14 C 1.50706 * 109.47182 * 170.00145 * 13 12 11 15 15 H 1.08000 * 119.99302 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00436 * 179.72677 * 14 13 12 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46683 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47426 * 119.99743 * 18 16 14 21 21 H 1.48501 * 109.46833 * 239.99986 * 18 16 14 22 22 C 1.47477 * 87.83167 * 27.01125 * 12 11 10 23 23 C 1.38237 * 119.99616 * 0.25025 * 7 6 5 24 24 C 1.38235 * 120.00086 * 359.49677 * 23 7 6 25 25 H 1.08998 * 109.47601 * 299.99859 * 1 2 3 26 26 H 1.09000 * 109.46742 * 60.00959 * 1 2 3 27 27 H 1.08999 * 109.46906 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47184 * 239.99813 * 2 1 3 29 29 H 1.08995 * 109.46675 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47099 * 299.99327 * 3 2 1 31 31 H 1.08997 * 109.47527 * 60.00023 * 3 2 1 32 32 H 1.08004 * 119.99859 * 0.02562 * 5 4 2 33 33 H 1.08000 * 120.00645 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.47036 * 329.99976 * 8 7 6 35 35 H 1.08997 * 109.46955 * 209.99734 * 8 7 6 36 36 H 1.09003 * 113.37734 * 343.07418 * 10 9 8 37 37 H 1.09005 * 113.47855 * 105.56295 * 11 10 9 38 38 H 1.08997 * 113.47719 * 335.09320 * 11 10 9 39 39 H 1.09001 * 109.47613 * 50.00491 * 13 12 11 40 40 H 1.08998 * 109.47678 * 290.00386 * 13 12 11 41 41 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 42 42 H 1.09000 * 113.48071 * 87.76093 * 22 12 11 43 43 H 1.09004 * 113.47566 * 218.21901 * 22 12 11 44 44 H 1.08001 * 120.00018 * 179.72890 * 23 7 6 45 45 H 1.07997 * 120.00324 * 180.23010 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8271 -1.8342 1.1038 6 6 3.2874 -2.4861 2.2325 7 6 2.9525 -2.0144 3.4881 8 6 3.4539 -2.7254 4.7186 9 8 4.7124 -2.1724 5.1087 10 6 5.2788 -2.7797 6.2716 11 6 6.1528 -1.8370 7.1106 12 7 7.0888 -2.9608 7.3009 13 6 8.4824 -2.5094 7.1911 14 6 9.4052 -3.6173 7.6296 15 1 8.9971 -4.5623 7.9566 16 6 10.7705 -3.4267 7.6074 17 7 11.2676 -2.2781 7.2031 18 14 11.9144 -4.8001 8.1502 19 1 11.1115 -5.9817 8.5555 20 1 12.8101 -5.1718 7.0257 21 1 12.7308 -4.3384 9.3015 22 6 6.6072 -3.5058 6.0179 23 6 2.1530 -0.8938 3.6148 24 6 1.6970 -0.2389 2.4861 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.0884 -2.2030 0.1229 33 1 3.9080 -3.3644 2.1336 34 1 3.5751 -3.7865 4.5010 35 1 2.7353 -2.6003 5.5285 36 1 4.5588 -3.3561 6.8527 37 1 5.6753 -1.5086 8.0339 38 1 6.5757 -1.0119 6.5375 39 1 8.6333 -1.6377 7.8278 40 1 8.6983 -2.2450 6.1560 41 1 12.2282 -2.1441 7.1871 42 1 7.1514 -3.1262 5.1531 43 1 6.5147 -4.5919 6.0149 44 1 1.8878 -0.5278 4.5957 45 1 1.0755 0.6388 2.5851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222118299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:30 Heat of formation + Delta-G solvation = -17.421403 kcal Electronic energy + Delta-G solvation = -21897.895411 eV Core-core repulsion = 18687.128574 eV Total energy + Delta-G solvation = -3210.766836 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.13030 -40.52808 -38.05403 -36.22348 -35.00831 -32.03554 -31.75837 -30.83435 -27.96941 -27.39586 -26.93472 -26.42419 -23.84742 -23.46444 -22.89754 -21.01430 -20.76580 -18.68501 -18.03779 -17.50552 -17.01656 -16.65637 -16.32771 -16.08757 -15.86650 -15.28651 -14.98917 -14.69507 -14.59175 -14.43223 -14.19354 -14.06141 -13.87163 -13.66105 -13.30410 -13.07251 -12.93134 -12.89876 -12.56341 -12.41771 -12.27761 -12.17031 -12.00731 -11.96888 -11.65656 -11.52497 -11.48786 -11.22150 -10.65556 -10.41764 -9.82061 -9.78629 -9.52562 -8.25552 -6.36811 0.31200 0.50457 1.38711 1.39688 1.54102 2.36920 2.50703 3.04294 3.06887 3.39035 3.47097 3.71818 3.83285 3.90250 4.08562 4.09506 4.14004 4.33093 4.35958 4.41825 4.47282 4.50286 4.53645 4.59994 4.64930 4.70828 4.73840 4.82054 4.85320 4.91967 4.96804 5.00474 5.04008 5.06670 5.16845 5.19873 5.34516 5.39780 5.52008 5.53089 5.68347 5.72080 5.74136 6.02776 6.09394 6.27338 6.37378 6.77581 7.32934 8.86285 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030169 B = 0.002400 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.885258 B =11661.479851 C =11937.322465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.076 4.076 5 C -0.132 4.132 6 C -0.110 4.110 7 C -0.111 4.111 8 C 0.097 3.903 9 O -0.386 6.386 10 C 0.084 3.916 11 C -0.008 4.008 12 N -0.478 5.478 13 C 0.177 3.823 14 C -0.527 4.527 15 H 0.062 0.938 16 C -0.002 4.002 17 N -0.935 5.935 18 Si 0.976 3.024 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.275 1.275 22 C -0.012 4.012 23 C -0.106 4.106 24 C -0.124 4.124 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.136 0.864 33 H 0.126 0.874 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.100 0.900 38 H 0.052 0.948 39 H 0.002 0.998 40 H -0.024 1.024 41 H 0.266 0.734 42 H 0.048 0.952 43 H 0.087 0.913 44 H 0.133 0.867 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.648 3.144 -13.820 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 C -0.201 4.201 4 C -0.076 4.076 5 C -0.150 4.150 6 C -0.128 4.128 7 C -0.112 4.112 8 C 0.022 3.978 9 O -0.305 6.305 10 C 0.025 3.975 11 C -0.137 4.137 12 N -0.202 5.202 13 C 0.049 3.951 14 C -0.565 4.565 15 H 0.080 0.920 16 C -0.200 4.200 17 N -0.576 5.576 18 Si 0.800 3.200 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.201 1.201 22 C -0.141 4.141 23 C -0.124 4.124 24 C -0.142 4.142 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.154 0.846 33 H 0.144 0.856 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.145 0.855 37 H 0.118 0.882 38 H 0.070 0.930 39 H 0.020 0.980 40 H -0.006 1.006 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.151 0.849 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.394 2.990 -13.332 27.960 hybrid contribution 1.316 -0.023 -0.310 1.352 sum -23.078 2.967 -13.642 26.972 Atomic orbital electron populations 1.21837 0.93310 1.02021 1.02638 1.20194 0.96717 0.96091 0.94570 1.21858 1.00699 0.94930 1.02653 1.20194 0.96690 0.95206 0.95550 1.21289 0.98630 0.96122 0.98948 1.21259 0.98876 1.00445 0.92243 1.19773 0.99411 0.97745 0.94229 1.21549 0.85000 0.96702 0.94596 1.88029 1.36322 1.60825 1.45310 1.23720 0.93046 0.94196 0.86503 1.24113 0.94622 0.95042 0.99938 1.68845 1.04292 1.17781 1.29287 1.19915 0.86049 0.95418 0.93671 1.21450 0.91310 1.00135 1.43600 0.91998 1.26019 1.00078 0.98687 0.95237 1.70099 1.13224 1.25744 1.48516 0.85234 0.78068 0.78705 0.78009 1.18665 1.20170 1.20084 1.24286 0.96092 1.01489 0.92269 1.21271 0.97097 0.94342 0.99702 1.21174 1.00864 1.00472 0.91680 0.92283 0.91127 0.92861 0.89961 0.93584 0.90977 0.92345 0.84616 0.85637 0.91467 0.90540 0.85499 0.88181 0.92978 0.98015 1.00644 0.92525 0.93319 0.89440 0.84908 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.01 71.98 0.65 -0.85 16 2 C -0.06 -0.76 3.09 -11.54 -0.04 -0.79 16 3 C -0.14 -1.83 9.01 71.98 0.65 -1.18 16 4 C -0.08 -1.37 4.78 -19.86 -0.09 -1.47 16 5 C -0.13 -2.59 9.67 22.27 0.22 -2.37 16 6 C -0.11 -2.46 9.70 22.27 0.22 -2.24 16 7 C -0.11 -2.58 5.51 -19.86 -0.11 -2.69 16 8 C 0.10 2.23 5.91 71.24 0.42 2.65 16 9 O -0.39 -11.92 10.37 -148.98 -1.55 -13.47 16 10 C 0.08 2.64 4.65 30.94 0.14 2.78 16 11 C -0.01 -0.30 7.52 83.57 0.63 0.33 16 12 N -0.48 -21.97 6.32 -933.04 -5.89 -27.86 16 13 C 0.18 9.98 4.57 85.56 0.39 10.37 16 14 C -0.53 -31.43 9.39 25.60 0.24 -31.19 16 15 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 16 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 17 N -0.94 -58.07 13.29 21.45 0.28 -57.79 16 18 Si 0.98 45.47 29.54 68.60 2.03 47.50 16 19 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 C -0.01 -0.47 7.55 83.57 0.63 0.16 16 23 C -0.11 -2.20 9.70 22.27 0.22 -1.98 16 24 C -0.12 -2.27 8.71 22.27 0.19 -2.08 16 25 H 0.06 0.61 7.39 -2.39 -0.02 0.59 16 26 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.08 1.00 7.88 -2.39 -0.02 0.98 16 29 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.72 7.39 -2.39 -0.02 0.71 16 32 H 0.14 2.13 7.95 -2.91 -0.02 2.10 16 33 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 35 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 36 H 0.13 3.21 7.88 -2.39 -0.02 3.19 16 37 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 38 H 0.05 2.13 7.91 -2.39 -0.02 2.12 16 39 H 0.00 0.11 8.08 -2.39 -0.02 0.09 16 40 H -0.02 -1.48 7.30 -2.39 -0.02 -1.49 16 41 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 42 H 0.05 2.14 7.42 -2.39 -0.02 2.12 16 43 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 44 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 45 H 0.14 1.95 7.10 -2.91 -0.02 1.93 16 Total: -1.00 -69.75 368.63 0.62 -69.13 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.94 Total: 12.72 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 4.82 Total: -30.24 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -5.61 Total: -85.65 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -1.55 Total: -13.47 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -69.75 0.62 -69.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222118299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.709 kcal (2) G-P(sol) polarization free energy of solvation -69.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds