Wall clock time and date at job start Tue Mar 31 2020 06:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47110 * 2 1 4 4 C 1.50698 * 109.46925 * 119.99761 * 2 1 3 5 5 C 1.38254 * 120.00207 * 300.02430 * 4 2 1 6 6 C 1.38217 * 119.99915 * 179.97438 * 5 4 2 7 7 C 1.38262 * 120.00053 * 359.95540 * 6 5 4 8 8 C 1.38209 * 119.99767 * 359.79237 * 7 6 5 9 9 C 1.38218 * 119.99455 * 120.00260 * 4 2 1 10 10 C 1.50695 * 120.00478 * 0.02562 * 9 4 2 11 11 O 1.42891 * 109.47400 * 180.02562 * 10 9 4 12 12 C 1.42901 * 114.00296 * 180.02562 * 11 10 9 13 13 H 1.09002 * 110.64076 * 29.29718 * 12 11 10 14 14 C 1.55157 * 110.87223 * 152.54738 * 12 11 10 15 15 C 1.54909 * 101.57958 * 153.93568 * 14 12 11 16 16 N 1.47426 * 104.83381 * 322.98989 * 15 14 12 17 17 C 1.36937 * 125.65098 * 204.09440 * 16 15 14 18 18 H 1.08000 * 120.00262 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99548 * 0.03593 * 17 16 15 20 20 N 1.31615 * 120.00732 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99599 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46881 * 90.00394 * 21 19 17 23 23 H 1.48499 * 109.47149 * 210.00031 * 21 19 17 24 24 H 1.48496 * 109.47418 * 330.00294 * 21 19 17 25 25 C 1.47018 * 108.70104 * 24.12870 * 16 15 14 26 26 H 1.08999 * 109.47133 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47738 * 300.00213 * 1 2 3 28 28 H 1.09000 * 109.46979 * 60.00137 * 1 2 3 29 29 H 1.08995 * 109.47466 * 240.00444 * 2 1 3 30 30 H 1.08994 * 109.47053 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47185 * 300.00339 * 3 2 1 32 32 H 1.09008 * 109.46851 * 59.99988 * 3 2 1 33 33 H 1.07999 * 120.00046 * 359.97438 * 5 4 2 34 34 H 1.08006 * 120.00005 * 179.97438 * 6 5 4 35 35 H 1.07997 * 119.99826 * 180.02562 * 7 6 5 36 36 H 1.08006 * 120.00002 * 180.25285 * 8 7 6 37 37 H 1.09007 * 109.46486 * 59.99990 * 10 9 4 38 38 H 1.08992 * 109.47229 * 300.00380 * 10 9 4 39 39 H 1.09000 * 111.00495 * 272.00951 * 14 12 11 40 40 H 1.08997 * 111.00429 * 35.86529 * 14 12 11 41 41 H 1.08998 * 110.36917 * 204.14700 * 15 14 12 42 42 H 1.09009 * 110.46209 * 81.87337 * 15 14 12 43 43 H 0.96996 * 120.00556 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.88222 * 239.52595 * 25 16 15 45 45 H 1.09004 * 109.88300 * 118.35961 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6978 -0.2383 2.4862 6 6 2.1581 -0.8902 3.6147 7 6 2.9522 -2.0149 3.4879 8 6 3.2822 -2.4898 2.2326 9 6 2.8269 -1.8341 1.1036 10 6 3.1915 -2.3486 -0.2650 11 8 4.0124 -3.5108 -0.1340 12 6 4.4167 -4.0806 -1.3806 13 1 4.4856 -3.3117 -2.1501 14 6 5.7660 -4.8323 -1.2331 15 6 5.6684 -5.8734 -2.3761 16 7 4.2508 -6.2776 -2.3985 17 6 3.7661 -7.4617 -2.8863 18 1 2.7056 -7.6640 -2.8576 19 6 4.6379 -8.4023 -3.4175 20 7 5.9304 -8.1562 -3.4519 21 14 3.9768 -10.0180 -4.0822 22 1 3.6565 -9.8658 -5.5243 23 1 5.0013 -11.0795 -3.9121 24 1 2.7472 -10.3931 -3.3389 25 6 3.4436 -5.1983 -1.8111 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8901 33 1 1.0770 0.6398 2.5852 34 1 1.8972 -0.5211 4.5957 35 1 3.3115 -2.5244 4.3697 36 1 3.8991 -3.3707 2.1334 37 1 3.7368 -1.5776 -0.8096 38 1 2.2835 -2.6053 -0.8105 39 1 6.6080 -4.1581 -1.3896 40 1 5.8356 -5.3232 -0.2625 41 1 6.3044 -6.7323 -2.1622 42 1 5.9492 -5.4220 -3.3277 43 1 6.5396 -8.8136 -3.8227 44 1 2.9007 -5.5718 -0.9429 45 1 2.7426 -4.8142 -2.5523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223910269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:51 Heat of formation + Delta-G solvation = -7.510577 kcal Electronic energy + Delta-G solvation = -22899.094483 eV Core-core repulsion = 19688.757412 eV Total energy + Delta-G solvation = -3210.337071 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.94844 -38.21599 -35.89697 -35.50379 -32.47081 -31.46104 -29.85494 -29.15311 -27.34166 -27.14617 -25.95182 -24.29890 -23.48637 -21.34073 -20.31691 -20.08328 -19.84827 -17.06345 -16.71340 -16.63449 -15.41791 -15.10097 -14.95100 -14.63853 -14.27365 -14.01373 -13.84059 -13.77761 -13.53597 -13.28354 -12.60045 -12.44794 -12.34756 -12.21157 -11.95507 -11.70083 -11.48742 -11.45009 -11.33593 -11.13343 -10.93777 -10.78813 -10.68665 -10.57765 -10.24173 -10.10303 -9.76334 -9.53115 -9.23602 -8.76547 -8.64509 -8.53948 -6.82884 -5.64415 -3.06260 1.30536 1.41189 3.41213 3.45950 3.48231 3.73124 3.86051 4.50153 4.51390 4.62965 4.89496 4.99728 5.03792 5.07862 5.25136 5.31127 5.38038 5.39995 5.42130 5.46532 5.52304 5.59159 5.61070 5.62092 5.73174 5.76476 5.79830 5.87739 5.98671 6.03381 6.04477 6.09814 6.33767 6.45147 6.52392 6.53579 6.59971 6.63912 6.70196 6.77813 7.00500 7.49954 7.63549 7.64798 7.86053 8.36561 9.22695 9.83465 10.47899 11.39713 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024644 B = 0.003172 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.924565 B = 8823.966911 C = 9093.610363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C -0.142 4.142 4 C -0.074 4.074 5 C -0.118 4.118 6 C -0.124 4.124 7 C -0.127 4.127 8 C -0.091 4.091 9 C -0.080 4.080 10 C 0.101 3.899 11 O -0.374 6.374 12 C 0.076 3.924 13 H 0.063 0.937 14 C -0.137 4.137 15 C 0.152 3.848 16 N -0.602 5.602 17 C -0.222 4.222 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.923 5.923 21 Si 0.916 3.084 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.118 3.882 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.013 0.987 43 H 0.252 0.748 44 H 0.033 0.967 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.910 18.698 10.378 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 C -0.199 4.199 4 C -0.074 4.074 5 C -0.136 4.136 6 C -0.142 4.142 7 C -0.145 4.145 8 C -0.109 4.109 9 C -0.080 4.080 10 C 0.025 3.975 11 O -0.293 6.293 12 C 0.019 3.981 13 H 0.081 0.919 14 C -0.176 4.176 15 C 0.027 3.973 16 N -0.329 5.329 17 C -0.350 4.350 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.572 5.572 21 Si 0.746 3.254 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.207 1.207 25 C -0.009 4.009 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.153 0.847 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.031 0.969 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -6.789 18.425 10.459 22.247 hybrid contribution -0.462 -0.676 -0.603 1.017 sum -7.251 17.749 9.856 21.558 Atomic orbital electron populations 1.21839 0.94204 1.02190 1.01777 1.20192 0.96137 0.96113 0.95792 1.21839 1.01292 0.95018 1.01798 1.19564 0.97745 0.95212 0.94888 1.20829 1.00846 1.00163 0.91773 1.21100 0.98552 0.96280 0.98260 1.21176 0.98959 0.96872 0.97496 1.21104 0.98714 0.99726 0.91347 1.19629 0.98155 0.95301 0.94954 1.21206 0.94567 0.88051 0.93679 1.87881 1.68698 1.42503 1.30199 1.23245 0.96148 0.94279 0.84458 0.91923 1.23145 0.93830 0.98530 1.02079 1.21961 0.87380 0.95888 0.92040 1.44389 1.02303 1.15004 1.71232 1.19094 0.92488 0.91369 1.32043 0.90464 1.24792 0.95520 0.98885 1.01500 1.69773 1.01196 1.34980 1.51264 0.86054 0.77615 0.83023 0.78708 1.21634 1.21610 1.20671 1.21695 0.93652 0.89463 0.96076 0.92389 0.92540 0.92354 0.90173 0.92513 0.92368 0.92531 0.86333 0.86431 0.86203 0.84712 0.92332 0.92094 0.92010 0.91137 0.87179 0.96854 0.93690 0.94860 0.96275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.01 37.16 0.33 -0.87 16 2 C -0.06 -0.61 2.96 -91.77 -0.27 -0.88 16 3 C -0.14 -1.15 9.01 37.16 0.33 -0.82 16 4 C -0.07 -0.84 4.78 -104.62 -0.50 -1.34 16 5 C -0.12 -1.22 8.71 -39.58 -0.34 -1.56 16 6 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 7 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 8 C -0.09 -1.23 9.38 -39.58 -0.37 -1.61 16 9 C -0.08 -1.07 5.88 -104.62 -0.62 -1.69 16 10 C 0.10 1.42 4.64 36.00 0.17 1.59 16 11 O -0.37 -6.41 8.56 -35.23 -0.30 -6.72 16 12 C 0.08 1.43 3.42 -24.90 -0.09 1.35 16 13 H 0.06 1.08 7.85 -51.93 -0.41 0.67 16 14 C -0.14 -2.74 6.82 -24.58 -0.17 -2.91 16 15 C 0.15 3.78 5.89 -2.53 -0.01 3.76 16 16 N -0.60 -15.98 3.39 -170.07 -0.58 -16.56 16 17 C -0.22 -6.33 10.27 -15.06 -0.15 -6.49 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 20 N -0.92 -27.17 10.09 55.49 0.56 -26.61 16 21 Si 0.92 22.31 29.55 -169.99 -5.02 17.28 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.12 2.60 7.02 -3.07 -0.02 2.58 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.43 7.39 -51.93 -0.38 0.05 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.79 6.01 -51.93 -0.31 0.48 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.42 7.39 -51.92 -0.38 0.03 16 33 H 0.12 0.98 7.10 -52.49 -0.37 0.61 16 34 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.14 1.96 7.01 -52.48 -0.37 1.59 16 37 H 0.06 0.75 7.81 -51.93 -0.41 0.34 16 38 H 0.06 0.83 7.84 -51.93 -0.41 0.43 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.11 3.05 5.87 -51.93 -0.30 2.74 16 42 H 0.01 0.35 8.14 -51.92 -0.42 -0.08 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.03 0.76 8.06 -51.93 -0.42 0.34 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 356.00 15.07 5.36 5.36 Total: -1.00 -30.70 356.00 -10.12 -40.81 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.54 Total: -0.73 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -2.60 Total: -12.85 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.02 Total: -43.17 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.30 Total: -6.72 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.70 -10.12 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223910269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.303 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds