Wall clock time and date at job start Tue Mar 31 2020 06:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47110 * 2 1 4 4 C 1.50698 * 109.46925 * 119.99761 * 2 1 3 5 5 C 1.38254 * 120.00207 * 300.02430 * 4 2 1 6 6 C 1.38217 * 119.99915 * 179.97438 * 5 4 2 7 7 C 1.38262 * 120.00053 * 359.95540 * 6 5 4 8 8 C 1.38209 * 119.99767 * 359.79237 * 7 6 5 9 9 C 1.38218 * 119.99455 * 120.00260 * 4 2 1 10 10 C 1.50695 * 120.00478 * 0.02562 * 9 4 2 11 11 O 1.42891 * 109.47400 * 180.02562 * 10 9 4 12 12 C 1.42901 * 114.00296 * 180.02562 * 11 10 9 13 13 H 1.09002 * 110.64076 * 29.29718 * 12 11 10 14 14 C 1.55157 * 110.87223 * 152.54738 * 12 11 10 15 15 C 1.54909 * 101.57958 * 153.93568 * 14 12 11 16 16 N 1.47426 * 104.83381 * 322.98989 * 15 14 12 17 17 C 1.36937 * 125.65098 * 204.09440 * 16 15 14 18 18 H 1.08000 * 120.00262 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99548 * 0.03593 * 17 16 15 20 20 N 1.31615 * 120.00732 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99599 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46881 * 90.00394 * 21 19 17 23 23 H 1.48499 * 109.47149 * 210.00031 * 21 19 17 24 24 H 1.48496 * 109.47418 * 330.00294 * 21 19 17 25 25 C 1.47018 * 108.70104 * 24.12870 * 16 15 14 26 26 H 1.08999 * 109.47133 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47738 * 300.00213 * 1 2 3 28 28 H 1.09000 * 109.46979 * 60.00137 * 1 2 3 29 29 H 1.08995 * 109.47466 * 240.00444 * 2 1 3 30 30 H 1.08994 * 109.47053 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47185 * 300.00339 * 3 2 1 32 32 H 1.09008 * 109.46851 * 59.99988 * 3 2 1 33 33 H 1.07999 * 120.00046 * 359.97438 * 5 4 2 34 34 H 1.08006 * 120.00005 * 179.97438 * 6 5 4 35 35 H 1.07997 * 119.99826 * 180.02562 * 7 6 5 36 36 H 1.08006 * 120.00002 * 180.25285 * 8 7 6 37 37 H 1.09007 * 109.46486 * 59.99990 * 10 9 4 38 38 H 1.08992 * 109.47229 * 300.00380 * 10 9 4 39 39 H 1.09000 * 111.00495 * 272.00951 * 14 12 11 40 40 H 1.08997 * 111.00429 * 35.86529 * 14 12 11 41 41 H 1.08998 * 110.36917 * 204.14700 * 15 14 12 42 42 H 1.09009 * 110.46209 * 81.87337 * 15 14 12 43 43 H 0.96996 * 120.00556 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.88222 * 239.52595 * 25 16 15 45 45 H 1.09004 * 109.88300 * 118.35961 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6978 -0.2383 2.4862 6 6 2.1581 -0.8902 3.6147 7 6 2.9522 -2.0149 3.4879 8 6 3.2822 -2.4898 2.2326 9 6 2.8269 -1.8341 1.1036 10 6 3.1915 -2.3486 -0.2650 11 8 4.0124 -3.5108 -0.1340 12 6 4.4167 -4.0806 -1.3806 13 1 4.4856 -3.3117 -2.1501 14 6 5.7660 -4.8323 -1.2331 15 6 5.6684 -5.8734 -2.3761 16 7 4.2508 -6.2776 -2.3985 17 6 3.7661 -7.4617 -2.8863 18 1 2.7056 -7.6640 -2.8576 19 6 4.6379 -8.4023 -3.4175 20 7 5.9304 -8.1562 -3.4519 21 14 3.9768 -10.0180 -4.0822 22 1 3.6565 -9.8658 -5.5243 23 1 5.0013 -11.0795 -3.9121 24 1 2.7472 -10.3931 -3.3389 25 6 3.4436 -5.1983 -1.8111 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8901 33 1 1.0770 0.6398 2.5852 34 1 1.8972 -0.5211 4.5957 35 1 3.3115 -2.5244 4.3697 36 1 3.8991 -3.3707 2.1334 37 1 3.7368 -1.5776 -0.8096 38 1 2.2835 -2.6053 -0.8105 39 1 6.6080 -4.1581 -1.3896 40 1 5.8356 -5.3232 -0.2625 41 1 6.3044 -6.7323 -2.1622 42 1 5.9492 -5.4220 -3.3277 43 1 6.5396 -8.8136 -3.8227 44 1 2.9007 -5.5718 -0.9429 45 1 2.7426 -4.8142 -2.5523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223910269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:50 Heat of formation + Delta-G solvation = -22.780798 kcal Electronic energy + Delta-G solvation = -22899.756650 eV Core-core repulsion = 19688.757412 eV Total energy + Delta-G solvation = -3210.999237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.87548 -39.72238 -37.52898 -36.25475 -34.32244 -32.67922 -31.04409 -30.66978 -28.89409 -27.96186 -27.16383 -26.18068 -24.33242 -22.37530 -21.99490 -21.78306 -20.71603 -19.00996 -18.03593 -17.64265 -16.83830 -16.55683 -16.12737 -15.94831 -15.71301 -15.22645 -14.91867 -14.75669 -14.55656 -14.38152 -14.27191 -13.66241 -13.56719 -13.35950 -13.14281 -13.01221 -12.87518 -12.75875 -12.63862 -12.50755 -12.27203 -12.06878 -12.02852 -12.01889 -11.80042 -11.51065 -11.34185 -11.29991 -10.77879 -10.65942 -9.65274 -9.44916 -8.93682 -7.80208 -5.25746 0.43336 0.52371 1.45893 1.48246 1.57163 2.44207 2.59701 2.85511 3.30263 3.68129 3.70990 3.81095 3.88624 3.95603 4.07965 4.16298 4.20567 4.30561 4.31878 4.38194 4.48188 4.52514 4.60462 4.62438 4.69494 4.79019 4.83663 4.95263 4.97419 5.00332 5.01163 5.02371 5.08955 5.18567 5.26101 5.36204 5.40918 5.42475 5.57538 5.61295 5.66371 5.75702 5.76587 6.13971 6.25446 6.33134 7.07325 7.73329 8.37045 9.21921 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024644 B = 0.003172 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.924565 B = 8823.966911 C = 9093.610363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.066 4.066 3 C -0.139 4.139 4 C -0.076 4.076 5 C -0.118 4.118 6 C -0.121 4.121 7 C -0.135 4.135 8 C -0.115 4.115 9 C -0.102 4.102 10 C 0.100 3.900 11 O -0.382 6.382 12 C 0.094 3.906 13 H 0.085 0.915 14 C -0.124 4.124 15 C 0.155 3.845 16 N -0.625 5.625 17 C -0.245 4.245 18 H 0.079 0.921 19 C -0.065 4.065 20 N -0.948 5.948 21 Si 0.984 3.016 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.271 1.271 25 C 0.115 3.885 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.134 0.866 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.078 0.922 42 H -0.002 1.002 43 H 0.249 0.751 44 H 0.022 0.978 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.227 20.686 11.127 24.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 C -0.196 4.196 4 C -0.076 4.076 5 C -0.136 4.136 6 C -0.139 4.139 7 C -0.153 4.153 8 C -0.133 4.133 9 C -0.102 4.102 10 C 0.024 3.976 11 O -0.301 6.301 12 C 0.035 3.965 13 H 0.103 0.897 14 C -0.163 4.163 15 C 0.030 3.970 16 N -0.352 5.352 17 C -0.374 4.374 18 H 0.097 0.903 19 C -0.257 4.257 20 N -0.598 5.598 21 Si 0.811 3.189 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.196 1.196 25 C -0.011 4.011 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.152 0.848 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.016 0.984 43 H 0.059 0.941 44 H 0.040 0.960 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -8.123 20.439 11.223 24.692 hybrid contribution -0.102 -1.234 -0.775 1.461 sum -8.224 19.205 10.448 23.359 Atomic orbital electron populations 1.21828 0.93341 1.01684 1.02936 1.20240 0.96811 0.96739 0.94600 1.21819 1.00804 0.94080 1.02905 1.19796 0.96999 0.94525 0.96267 1.21170 1.00502 1.00685 0.91226 1.21461 0.97346 0.95390 0.99727 1.21390 0.99205 0.97538 0.97156 1.21084 0.99777 0.99810 0.92672 1.19685 0.99681 0.96557 0.94276 1.21368 0.94256 0.87169 0.94797 1.87879 1.69256 1.43802 1.29144 1.22965 0.94070 0.93756 0.85670 0.89713 1.22956 0.95931 0.97817 0.99556 1.21747 0.86327 0.95902 0.93033 1.44696 1.03569 1.15611 1.71361 1.19457 0.92837 0.92652 1.32418 0.90348 1.25667 0.95854 1.02223 1.01992 1.70020 1.02181 1.35798 1.51752 0.85005 0.77179 0.78617 0.78060 1.21068 1.21665 1.19585 1.21835 0.94195 0.89581 0.95491 0.93712 0.91453 0.91167 0.90956 0.93260 0.91200 0.91524 0.83804 0.83603 0.84781 0.86757 0.90834 0.92037 0.88966 0.91876 0.90433 0.98440 0.94095 0.95994 0.95565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.01 71.98 0.65 -1.41 16 2 C -0.07 -1.11 2.96 -11.54 -0.03 -1.14 16 3 C -0.14 -1.88 9.01 71.98 0.65 -1.23 16 4 C -0.08 -1.59 4.78 -19.87 -0.09 -1.68 16 5 C -0.12 -2.11 8.71 22.27 0.19 -1.92 16 6 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 7 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 8 C -0.12 -3.13 9.38 22.27 0.21 -2.92 16 9 C -0.10 -2.65 5.88 -19.86 -0.12 -2.77 16 10 C 0.10 2.73 4.64 71.23 0.33 3.06 16 11 O -0.38 -12.97 8.56 -148.98 -1.27 -14.25 16 12 C 0.09 3.44 3.42 31.78 0.11 3.55 16 13 H 0.08 2.77 7.85 -2.39 -0.02 2.75 16 14 C -0.12 -4.94 6.82 31.99 0.22 -4.72 16 15 C 0.15 7.88 5.89 86.85 0.51 8.39 16 16 N -0.63 -33.89 3.39 -691.98 -2.35 -36.24 16 17 C -0.24 -14.27 10.27 84.03 0.86 -13.40 16 18 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 19 C -0.06 -3.75 5.49 84.86 0.47 -3.29 16 20 N -0.95 -57.22 10.09 21.65 0.22 -57.01 16 21 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 C 0.11 5.12 7.02 86.73 0.61 5.73 16 26 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.83 7.39 -2.39 -0.02 0.81 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 1.32 6.01 -2.39 -0.01 1.31 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.76 7.39 -2.38 -0.02 0.75 16 33 H 0.14 1.81 7.10 -2.91 -0.02 1.79 16 34 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.11 3.47 7.01 -2.91 -0.02 3.45 16 37 H 0.07 1.76 7.81 -2.38 -0.02 1.75 16 38 H 0.06 1.65 7.84 -2.39 -0.02 1.63 16 39 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.08 4.47 5.87 -2.39 -0.01 4.46 16 42 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 43 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 44 H 0.02 1.02 8.06 -2.39 -0.02 1.00 16 45 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -67.26 356.00 4.57 -62.68 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.94 Total: 14.88 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 5.01 Total: -18.46 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -2.13 Total: -93.25 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -1.27 Total: -14.25 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -67.26 4.57 -62.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223910269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.903 kcal (2) G-P(sol) polarization free energy of solvation -67.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds