Wall clock time and date at job start Tue Mar 31 2020 06:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47048 * 2 1 4 4 C 1.50694 * 109.47048 * 119.99785 * 2 1 3 5 5 C 1.38254 * 120.00490 * 300.25441 * 4 2 1 6 6 C 1.38208 * 120.00109 * 180.27573 * 5 4 2 7 7 C 1.38257 * 120.00400 * 359.74528 * 6 5 4 8 8 C 1.38219 * 119.99824 * 359.97438 * 7 6 5 9 9 C 1.38225 * 119.99700 * 120.00284 * 4 2 1 10 10 C 1.50693 * 119.99879 * 359.97438 * 9 4 2 11 11 O 1.42908 * 109.47081 * 179.72639 * 10 9 4 12 12 C 1.42900 * 113.99997 * 180.02562 * 11 10 9 13 13 C 1.53514 * 114.16934 * 150.00256 * 12 11 10 14 14 N 1.47483 * 87.92777 * 87.81254 * 13 12 11 15 15 C 1.46903 * 110.99717 * 138.70421 * 14 13 12 16 16 C 1.50694 * 109.47066 * 169.99804 * 15 14 13 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47480 * 87.83900 * 27.00973 * 14 13 12 25 25 H 1.08997 * 109.47162 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47135 * 299.99956 * 1 2 3 27 27 H 1.08998 * 109.47018 * 59.99905 * 1 2 3 28 28 H 1.08996 * 109.47135 * 240.00044 * 2 1 3 29 29 H 1.08996 * 109.47007 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47015 * 300.00095 * 3 2 1 31 31 H 1.09004 * 109.47385 * 59.99864 * 3 2 1 32 32 H 1.08003 * 120.00127 * 0.04104 * 5 4 2 33 33 H 1.08007 * 120.00090 * 179.76794 * 6 5 4 34 34 H 1.07996 * 120.00602 * 179.97438 * 7 6 5 35 35 H 1.07994 * 120.00187 * 180.02562 * 8 7 6 36 36 H 1.09003 * 109.47110 * 59.73451 * 10 9 4 37 37 H 1.08996 * 109.47699 * 299.72837 * 10 9 4 38 38 H 1.09004 * 113.25466 * 17.04971 * 12 11 10 39 39 H 1.09000 * 113.47331 * 333.04932 * 13 12 11 40 40 H 1.08997 * 113.47627 * 202.58057 * 13 12 11 41 41 H 1.09007 * 109.47052 * 49.99488 * 15 14 13 42 42 H 1.09003 * 109.46808 * 290.00181 * 15 14 13 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.09004 * 113.47132 * 87.75237 * 24 14 13 45 45 H 1.09000 * 113.47538 * 218.21976 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 1.6940 -0.2411 2.4862 6 6 2.1594 -0.8893 3.6146 7 6 2.9590 -2.0101 3.4878 8 6 3.2925 -2.4827 2.2325 9 6 2.8270 -1.8341 1.1036 10 6 3.1906 -2.3493 -0.2651 11 8 4.0176 -3.5074 -0.1340 12 6 4.4214 -4.0773 -1.3807 13 6 5.7847 -4.7818 -1.3375 14 7 5.0779 -6.0078 -0.9220 15 6 5.6276 -7.1883 -1.6020 16 6 5.0580 -8.4370 -0.9798 17 1 4.3580 -8.3613 -0.1608 18 6 5.4313 -9.6762 -1.4553 19 7 6.2840 -9.7684 -2.4523 20 14 4.7257 -11.2240 -0.6835 21 1 5.6011 -11.6641 0.4324 22 1 3.3641 -10.9411 -0.1626 23 1 4.6510 -12.2976 -1.7069 24 6 3.8897 -5.4957 -1.6297 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.0692 0.6342 2.5853 33 1 1.8983 -0.5205 4.5956 34 1 3.3230 -2.5164 4.3696 35 1 3.9167 -3.3583 2.1334 36 1 3.7313 -1.5769 -0.8122 37 1 2.2824 -2.6109 -0.8080 38 1 4.2960 -3.3991 -2.2247 39 1 6.4538 -4.3862 -0.5733 40 1 6.2615 -4.8652 -2.3141 41 1 6.7129 -7.1939 -1.4999 42 1 5.3623 -7.1552 -2.6587 43 1 6.5469 -10.6402 -2.7866 44 1 3.8609 -5.7697 -2.6844 45 1 2.9529 -5.7052 -1.1133 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223911582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:34 Heat of formation + Delta-G solvation = 7.161127 kcal Electronic energy + Delta-G solvation = -22536.370081 eV Core-core repulsion = 19326.669223 eV Total energy + Delta-G solvation = -3209.700858 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.05276 -39.37309 -36.45820 -35.54279 -32.85765 -31.73614 -29.87043 -29.05579 -27.39514 -26.12378 -25.39680 -24.94774 -23.56174 -21.65876 -21.35798 -20.02410 -19.34001 -16.88861 -16.67456 -16.25249 -15.52463 -15.35963 -15.14211 -14.89518 -14.29608 -14.06834 -13.89957 -13.88117 -13.54998 -13.47862 -13.26023 -12.64275 -12.37378 -12.32742 -12.01215 -11.99077 -11.79748 -11.50054 -11.39358 -11.19522 -11.05891 -10.79638 -10.72471 -10.54401 -10.45154 -10.20501 -9.62575 -9.27710 -9.20703 -8.77450 -8.57700 -8.39907 -7.76698 -6.00868 -4.01419 1.28496 1.40352 3.34611 3.39910 3.45069 3.62869 3.71647 4.44809 4.46087 4.58065 4.77644 4.87599 4.94694 4.99432 5.05230 5.07466 5.20114 5.27093 5.33979 5.34696 5.35797 5.37907 5.45792 5.56174 5.56903 5.69538 5.74405 5.85164 5.96670 5.98213 5.99248 6.00389 6.09562 6.19209 6.27986 6.40719 6.45372 6.55836 6.65042 6.71630 6.99801 7.19703 7.48727 7.70385 7.91197 8.15536 8.51116 9.06679 9.62553 11.10347 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023330 B = 0.002990 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.896679 B = 9362.333704 C = 9847.508143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C -0.142 4.142 4 C -0.075 4.075 5 C -0.119 4.119 6 C -0.122 4.122 7 C -0.126 4.126 8 C -0.089 4.089 9 C -0.083 4.083 10 C 0.101 3.899 11 O -0.345 6.345 12 C 0.055 3.945 13 C -0.007 4.007 14 N -0.455 5.455 15 C 0.156 3.844 16 C -0.502 4.502 17 H 0.063 0.937 18 C 0.053 3.947 19 N -0.902 5.902 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.273 1.273 23 H -0.287 1.287 24 C -0.008 4.008 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.028 0.972 42 H 0.002 0.998 43 H 0.261 0.739 44 H 0.070 0.930 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.552 23.129 5.033 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C -0.200 4.200 4 C -0.075 4.075 5 C -0.137 4.137 6 C -0.141 4.141 7 C -0.144 4.144 8 C -0.107 4.107 9 C -0.083 4.083 10 C 0.024 3.976 11 O -0.264 6.264 12 C -0.003 4.003 13 C -0.136 4.136 14 N -0.178 5.178 15 C 0.030 3.970 16 C -0.540 4.540 17 H 0.082 0.918 18 C -0.148 4.148 19 N -0.542 5.542 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.198 1.198 23 H -0.213 1.213 24 C -0.138 4.138 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.156 0.844 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.020 0.980 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.426 22.680 5.802 25.237 hybrid contribution -0.220 -0.834 -0.765 1.154 sum -9.646 21.846 5.036 24.406 Atomic orbital electron populations 1.21844 0.94226 1.02168 1.01803 1.20180 0.96108 0.96100 0.95725 1.21840 1.01296 0.95021 1.01817 1.19540 0.97866 0.95187 0.94870 1.20818 1.00885 1.00236 0.91778 1.21113 0.98401 0.96254 0.98285 1.21204 0.98778 0.96797 0.97616 1.21163 0.98465 0.99710 0.91318 1.19561 0.98496 0.95467 0.94784 1.21260 0.94313 0.87985 0.94021 1.87950 1.67966 1.42472 1.27986 1.23304 0.97315 0.93913 0.85780 1.24034 0.95630 0.93590 1.00365 1.69035 1.02439 1.01363 1.44937 1.20297 0.95930 0.88353 0.92463 1.21119 1.25922 0.89804 1.17183 0.91847 1.25013 0.95343 0.99277 0.95173 1.69959 1.33559 1.24398 1.26278 0.86473 0.79547 0.82431 0.78837 1.20608 1.19811 1.21330 1.24222 0.98316 0.92880 0.98344 0.92407 0.92492 0.92397 0.90297 0.92506 0.92411 0.92484 0.86350 0.86407 0.86096 0.84390 0.92275 0.92111 0.91108 0.90105 0.91209 0.95355 0.97995 0.92970 0.91237 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.00 37.16 0.33 -0.75 16 2 C -0.06 -0.54 2.96 -91.77 -0.27 -0.81 16 3 C -0.14 -1.04 9.01 37.16 0.33 -0.70 16 4 C -0.07 -0.80 4.78 -104.62 -0.50 -1.30 16 5 C -0.12 -1.19 8.71 -39.59 -0.34 -1.53 16 6 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 7 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 8 C -0.09 -1.20 9.38 -39.58 -0.37 -1.57 16 9 C -0.08 -1.05 5.88 -104.62 -0.62 -1.67 16 10 C 0.10 1.26 4.63 36.00 0.17 1.43 16 11 O -0.35 -5.54 8.88 -35.23 -0.31 -5.85 16 12 C 0.06 0.88 4.65 -26.20 -0.12 0.76 16 13 C -0.01 -0.12 7.52 -7.53 -0.06 -0.18 16 14 N -0.45 -10.36 6.32 -246.08 -1.55 -11.91 16 15 C 0.16 4.18 4.57 -4.98 -0.02 4.15 16 16 C -0.50 -14.73 9.39 -34.44 -0.32 -15.05 16 17 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 20 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 C -0.01 -0.15 7.56 -7.54 -0.06 -0.21 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.40 7.37 -51.93 -0.38 0.02 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.67 6.01 -51.93 -0.31 0.36 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.39 7.41 -51.93 -0.38 0.00 16 32 H 0.12 0.94 7.10 -52.48 -0.37 0.56 16 33 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.14 2.08 7.01 -52.49 -0.37 1.71 16 36 H 0.06 0.65 7.83 -51.93 -0.41 0.24 16 37 H 0.06 0.71 7.86 -51.93 -0.41 0.30 16 38 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.07 1.21 7.91 -51.93 -0.41 0.80 16 41 H 0.03 0.81 8.08 -51.92 -0.42 0.39 16 42 H 0.00 0.06 7.30 -51.93 -0.38 -0.32 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.07 1.31 7.42 -51.93 -0.39 0.93 16 45 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 LS Contribution 363.21 15.07 5.47 5.47 Total: -1.00 -31.95 363.21 -10.99 -42.94 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.57 Total: -1.83 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -2.74 Total: -19.49 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.82 Total: -38.48 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.31 Total: -5.85 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.95 -10.99 -42.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223911582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.098 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds