Wall clock time and date at job start Tue Mar 31 2020 06:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47048 * 2 1 4 4 C 1.50694 * 109.47048 * 119.99785 * 2 1 3 5 5 C 1.38254 * 120.00490 * 300.25441 * 4 2 1 6 6 C 1.38208 * 120.00109 * 180.27573 * 5 4 2 7 7 C 1.38257 * 120.00400 * 359.74528 * 6 5 4 8 8 C 1.38219 * 119.99824 * 359.97438 * 7 6 5 9 9 C 1.38225 * 119.99700 * 120.00284 * 4 2 1 10 10 C 1.50693 * 119.99879 * 359.97438 * 9 4 2 11 11 O 1.42908 * 109.47081 * 179.72639 * 10 9 4 12 12 C 1.42900 * 113.99997 * 180.02562 * 11 10 9 13 13 C 1.53514 * 114.16934 * 150.00256 * 12 11 10 14 14 N 1.47483 * 87.92777 * 87.81254 * 13 12 11 15 15 C 1.46903 * 110.99717 * 138.70421 * 14 13 12 16 16 C 1.50694 * 109.47066 * 169.99804 * 15 14 13 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47480 * 87.83900 * 27.00973 * 14 13 12 25 25 H 1.08997 * 109.47162 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47135 * 299.99956 * 1 2 3 27 27 H 1.08998 * 109.47018 * 59.99905 * 1 2 3 28 28 H 1.08996 * 109.47135 * 240.00044 * 2 1 3 29 29 H 1.08996 * 109.47007 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47015 * 300.00095 * 3 2 1 31 31 H 1.09004 * 109.47385 * 59.99864 * 3 2 1 32 32 H 1.08003 * 120.00127 * 0.04104 * 5 4 2 33 33 H 1.08007 * 120.00090 * 179.76794 * 6 5 4 34 34 H 1.07996 * 120.00602 * 179.97438 * 7 6 5 35 35 H 1.07994 * 120.00187 * 180.02562 * 8 7 6 36 36 H 1.09003 * 109.47110 * 59.73451 * 10 9 4 37 37 H 1.08996 * 109.47699 * 299.72837 * 10 9 4 38 38 H 1.09004 * 113.25466 * 17.04971 * 12 11 10 39 39 H 1.09000 * 113.47331 * 333.04932 * 13 12 11 40 40 H 1.08997 * 113.47627 * 202.58057 * 13 12 11 41 41 H 1.09007 * 109.47052 * 49.99488 * 15 14 13 42 42 H 1.09003 * 109.46808 * 290.00181 * 15 14 13 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.09004 * 113.47132 * 87.75237 * 24 14 13 45 45 H 1.09000 * 113.47538 * 218.21976 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 1.6940 -0.2411 2.4862 6 6 2.1594 -0.8893 3.6146 7 6 2.9590 -2.0101 3.4878 8 6 3.2925 -2.4827 2.2325 9 6 2.8270 -1.8341 1.1036 10 6 3.1906 -2.3493 -0.2651 11 8 4.0176 -3.5074 -0.1340 12 6 4.4214 -4.0773 -1.3807 13 6 5.7847 -4.7818 -1.3375 14 7 5.0779 -6.0078 -0.9220 15 6 5.6276 -7.1883 -1.6020 16 6 5.0580 -8.4370 -0.9798 17 1 4.3580 -8.3613 -0.1608 18 6 5.4313 -9.6762 -1.4553 19 7 6.2840 -9.7684 -2.4523 20 14 4.7257 -11.2240 -0.6835 21 1 5.6011 -11.6641 0.4324 22 1 3.3641 -10.9411 -0.1626 23 1 4.6510 -12.2976 -1.7069 24 6 3.8897 -5.4957 -1.6297 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.0692 0.6342 2.5853 33 1 1.8983 -0.5205 4.5956 34 1 3.3230 -2.5164 4.3696 35 1 3.9167 -3.3583 2.1334 36 1 3.7313 -1.5769 -0.8122 37 1 2.2824 -2.6109 -0.8080 38 1 4.2960 -3.3991 -2.2247 39 1 6.4538 -4.3862 -0.5733 40 1 6.2615 -4.8652 -2.3141 41 1 6.7129 -7.1939 -1.4999 42 1 5.3623 -7.1552 -2.6587 43 1 6.5469 -10.6402 -2.7866 44 1 3.8609 -5.7697 -2.6844 45 1 2.9529 -5.7052 -1.1133 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223911582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:33 Heat of formation + Delta-G solvation = -12.415116 kcal Electronic energy + Delta-G solvation = -22537.218970 eV Core-core repulsion = 19326.669223 eV Total energy + Delta-G solvation = -3210.549747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.19487 -40.58431 -37.74513 -36.24132 -35.02078 -32.76023 -30.92821 -30.65706 -27.93973 -27.39816 -26.95986 -26.56333 -24.37561 -23.56799 -22.24045 -20.94239 -20.61482 -18.60783 -17.86061 -17.66329 -16.95922 -16.60182 -16.35373 -15.99998 -15.72164 -15.40111 -15.06728 -14.74438 -14.71021 -14.52704 -14.35581 -13.96263 -13.64636 -13.43774 -13.27969 -13.03676 -12.91949 -12.82465 -12.63145 -12.41418 -12.31125 -12.23161 -12.02080 -11.98696 -11.53580 -11.43967 -11.30661 -11.25635 -10.64649 -10.55079 -9.64666 -9.55450 -9.43665 -8.25111 -6.35238 0.43904 0.52802 1.37251 1.39273 1.50894 2.37493 2.46392 2.85923 3.06568 3.43119 3.45776 3.74925 3.88540 3.98146 4.01165 4.21380 4.29568 4.31028 4.34267 4.47896 4.50375 4.52346 4.53759 4.61440 4.66812 4.69513 4.75084 4.85784 4.88034 4.98134 5.02281 5.03254 5.03586 5.10097 5.19472 5.27197 5.38253 5.43110 5.56788 5.61309 5.67542 5.76843 5.79384 6.08144 6.14623 6.34020 6.49169 6.79045 7.34275 8.85977 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023330 B = 0.002990 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.896679 B = 9362.333704 C = 9847.508143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 C -0.140 4.140 4 C -0.074 4.074 5 C -0.119 4.119 6 C -0.122 4.122 7 C -0.138 4.138 8 C -0.116 4.116 9 C -0.101 4.101 10 C 0.099 3.901 11 O -0.368 6.368 12 C 0.084 3.916 13 C -0.010 4.010 14 N -0.486 5.486 15 C 0.172 3.828 16 C -0.528 4.528 17 H 0.052 0.948 18 C 0.002 3.998 19 N -0.933 5.933 20 Si 0.970 3.030 21 H -0.272 1.272 22 H -0.268 1.268 23 H -0.276 1.276 24 C -0.013 4.013 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.129 0.871 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.000 1.000 42 H -0.015 1.015 43 H 0.266 0.734 44 H 0.073 0.927 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.193 24.998 5.255 27.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 C -0.197 4.197 4 C -0.074 4.074 5 C -0.137 4.137 6 C -0.140 4.140 7 C -0.156 4.156 8 C -0.134 4.134 9 C -0.102 4.102 10 C 0.023 3.977 11 O -0.286 6.286 12 C 0.025 3.975 13 C -0.139 4.139 14 N -0.208 5.208 15 C 0.045 3.955 16 C -0.566 4.566 17 H 0.071 0.929 18 C -0.196 4.196 19 N -0.573 5.573 20 Si 0.794 3.206 21 H -0.198 1.198 22 H -0.192 1.192 23 H -0.201 1.201 24 C -0.142 4.142 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.147 0.853 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.133 0.867 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.018 0.982 42 H 0.003 0.997 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.071 24.571 6.028 27.616 hybrid contribution 0.275 -1.328 -0.794 1.572 sum -10.796 23.243 5.234 26.157 Atomic orbital electron populations 1.21835 0.93392 1.01743 1.02884 1.20238 0.96730 0.96620 0.94556 1.21825 1.00823 0.94196 1.02857 1.19809 0.96942 0.94416 0.96280 1.21174 1.00478 1.00687 0.91318 1.21437 0.97371 0.95383 0.99808 1.21374 0.99352 0.97657 0.97199 1.21080 0.99697 0.99773 0.92867 1.19701 0.99541 0.96477 0.94434 1.21461 0.94422 0.87218 0.94586 1.87947 1.68583 1.43903 1.28214 1.23065 0.94217 0.93010 0.87199 1.24111 0.97099 0.91868 1.00796 1.68951 1.04779 1.01562 1.45552 1.19963 0.94111 0.89828 0.91608 1.21413 1.26329 0.91483 1.17392 0.92922 1.25922 0.95457 1.02687 0.95511 1.70065 1.34389 1.25558 1.27296 0.85373 0.78916 0.78089 0.78188 1.19792 1.19219 1.20107 1.24278 0.96659 0.95334 0.97966 0.93573 0.91776 0.91014 0.90339 0.93240 0.91051 0.91821 0.83807 0.83807 0.85284 0.87174 0.90226 0.91116 0.86713 0.90032 0.90171 0.98197 0.99691 0.92502 0.90934 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.00 71.98 0.65 -1.12 16 2 C -0.06 -0.92 2.96 -11.54 -0.03 -0.95 16 3 C -0.14 -1.63 9.01 71.98 0.65 -0.98 16 4 C -0.07 -1.46 4.78 -19.87 -0.09 -1.55 16 5 C -0.12 -2.08 8.71 22.27 0.19 -1.88 16 6 C -0.12 -2.27 10.05 22.27 0.22 -2.05 16 7 C -0.14 -3.18 10.05 22.27 0.22 -2.96 16 8 C -0.12 -3.23 9.38 22.27 0.21 -3.02 16 9 C -0.10 -2.51 5.88 -19.86 -0.12 -2.63 16 10 C 0.10 2.35 4.63 71.23 0.33 2.68 16 11 O -0.37 -11.68 8.88 -148.98 -1.32 -13.00 16 12 C 0.08 2.57 4.65 30.94 0.14 2.72 16 13 C -0.01 -0.35 7.52 83.58 0.63 0.28 16 14 N -0.49 -22.80 6.32 -932.85 -5.89 -28.69 16 15 C 0.17 9.60 4.57 85.55 0.39 9.99 16 16 C -0.53 -31.93 9.39 25.60 0.24 -31.69 16 17 H 0.05 3.22 7.81 -2.91 -0.02 3.19 16 18 C 0.00 0.14 5.46 84.66 0.46 0.60 16 19 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 20 Si 0.97 46.03 29.54 68.60 2.03 48.06 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 C -0.01 -0.50 7.56 83.58 0.63 0.14 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.70 7.37 -2.39 -0.02 0.69 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 1.14 6.01 -2.39 -0.01 1.13 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.66 7.41 -2.38 -0.02 0.64 16 32 H 0.14 1.75 7.10 -2.91 -0.02 1.73 16 33 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.11 3.59 7.01 -2.91 -0.02 3.57 16 36 H 0.08 1.55 7.83 -2.39 -0.02 1.54 16 37 H 0.07 1.53 7.86 -2.39 -0.02 1.51 16 38 H 0.12 2.58 7.88 -2.38 -0.02 2.56 16 39 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.08 2.78 7.91 -2.39 -0.02 2.76 16 41 H 0.00 0.00 8.08 -2.38 -0.02 -0.02 16 42 H -0.01 -0.84 7.30 -2.39 -0.02 -0.86 16 43 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 44 H 0.07 2.76 7.42 -2.39 -0.02 2.74 16 45 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -70.82 363.21 0.77 -70.05 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.94 Total: 13.10 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: 4.73 Total: -32.43 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -5.61 Total: -85.77 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -1.32 Total: -13.00 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -70.82 0.77 -70.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223911582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.633 kcal (2) G-P(sol) polarization free energy of solvation -70.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds