Wall clock time and date at job start Tue Mar 31 2020 06:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47196 * 2 1 4 4 C 1.50700 * 109.47058 * 120.00268 * 2 1 3 5 5 C 1.38261 * 119.99368 * 299.97684 * 4 2 1 6 6 C 1.38220 * 119.99459 * 180.02562 * 5 4 2 7 7 C 1.38259 * 120.00037 * 359.80769 * 6 5 4 8 8 C 1.38208 * 119.99712 * 0.44532 * 7 6 5 9 9 C 1.50709 * 119.99898 * 179.78460 * 8 7 6 10 10 O 1.42906 * 109.46935 * 269.72984 * 9 8 7 11 11 C 1.42903 * 113.99676 * 180.02562 * 10 9 8 12 12 C 1.53514 * 114.17081 * 149.99722 * 11 10 9 13 13 N 1.47483 * 87.92777 * 87.61994 * 12 11 10 14 14 C 1.46903 * 110.99717 * 138.70421 * 13 12 11 15 15 C 1.50694 * 109.47066 * 169.99804 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.47480 * 87.83900 * 27.00973 * 13 12 11 24 24 C 1.38211 * 120.00100 * 120.00137 * 4 2 1 25 25 H 1.08997 * 109.47250 * 299.99736 * 1 2 3 26 26 H 1.09005 * 109.47323 * 60.00307 * 1 2 3 27 27 H 1.09004 * 109.47493 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46974 * 239.99667 * 2 1 3 29 29 H 1.08993 * 109.47258 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47102 * 300.00401 * 3 2 1 31 31 H 1.09004 * 109.47431 * 59.99947 * 3 2 1 32 32 H 1.07999 * 120.00612 * 359.97438 * 5 4 2 33 33 H 1.07996 * 119.99553 * 179.97438 * 6 5 4 34 34 H 1.07997 * 119.99650 * 180.23080 * 7 6 5 35 35 H 1.09000 * 109.47386 * 149.72664 * 9 8 7 36 36 H 1.08994 * 109.46963 * 29.72596 * 9 8 7 37 37 H 1.08997 * 113.25538 * 17.04389 * 11 10 9 38 38 H 1.09000 * 113.47331 * 332.85672 * 12 11 10 39 39 H 1.08995 * 113.52785 * 202.39262 * 12 11 10 40 40 H 1.09007 * 109.47052 * 49.99488 * 14 13 12 41 41 H 1.09003 * 109.46808 * 290.00181 * 14 13 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 43 43 H 1.09004 * 113.47132 * 87.75237 * 23 13 12 44 44 H 1.09000 * 113.47538 * 218.21976 * 23 13 12 45 45 H 1.07994 * 120.00072 * 359.96948 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6986 -0.2378 2.4861 6 6 2.1598 -0.8891 3.6147 7 6 2.9514 -2.0155 3.4878 8 6 3.2892 -2.4848 2.2325 9 6 4.1561 -3.7098 2.0942 10 8 5.5298 -3.3186 2.0494 11 6 6.4413 -4.4113 1.9179 12 6 7.7364 -4.0632 1.1708 13 7 8.3062 -3.6419 2.4642 14 6 9.6998 -4.0875 2.5956 15 6 10.3230 -3.4380 3.8043 16 1 9.7421 -2.7616 4.4137 17 6 11.6352 -3.7066 4.1316 18 7 12.3428 -4.5299 3.3893 19 14 12.4078 -2.9010 5.6294 20 1 13.0306 -1.6127 5.2326 21 1 11.3607 -2.6504 6.6521 22 1 13.4464 -3.7997 6.1943 23 6 7.3842 -4.5907 3.1160 24 6 2.8269 -1.8342 1.1036 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1299 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.0784 0.6408 2.5853 33 1 1.8995 -0.5196 4.5955 34 1 3.3086 -2.5265 4.3697 35 1 3.8979 -4.2358 1.1751 36 1 3.9936 -4.3682 2.9475 37 1 5.9645 -5.3312 1.5798 38 1 7.6210 -3.2449 0.4600 39 1 8.2356 -4.9302 0.7382 40 1 10.2575 -3.8043 1.7028 41 1 9.7254 -5.1710 2.7115 42 1 13.2660 -4.7186 3.6193 43 1 7.7889 -5.5991 3.2028 44 1 6.9706 -4.2196 4.0536 45 1 3.0875 -2.2034 0.1227 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223948109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:37 Heat of formation + Delta-G solvation = 5.849016 kcal Electronic energy + Delta-G solvation = -22136.877059 eV Core-core repulsion = 18927.119304 eV Total energy + Delta-G solvation = -3209.757755 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.91401 -39.38217 -36.69553 -35.37624 -32.82172 -31.65197 -30.08936 -29.03083 -27.39204 -26.10390 -25.36891 -24.89064 -23.23326 -22.16092 -21.64208 -19.64374 -19.37522 -16.92972 -16.48724 -16.19656 -15.95855 -15.52813 -15.01811 -14.79141 -14.36036 -14.05073 -13.92692 -13.80264 -13.57515 -13.38605 -13.19715 -12.64689 -12.36579 -12.19665 -12.10775 -12.04145 -11.87838 -11.42432 -11.36679 -11.12356 -11.02105 -10.84248 -10.72167 -10.67053 -10.45967 -10.17891 -9.62007 -9.21566 -9.12258 -8.90544 -8.72330 -8.38888 -7.74311 -5.99856 -4.00299 1.20922 1.33026 3.35240 3.40430 3.45647 3.47731 4.05705 4.42136 4.46740 4.56560 4.76216 4.86961 4.92443 4.95136 5.03123 5.09437 5.16121 5.26692 5.31306 5.35459 5.35908 5.36622 5.42118 5.48255 5.56484 5.64711 5.75163 5.87828 5.90798 5.98941 6.00636 6.01335 6.01595 6.20412 6.29671 6.39894 6.44602 6.49957 6.56504 6.73419 6.92219 7.20979 7.50469 7.71933 7.92607 8.17077 8.52739 9.07803 9.63546 11.11358 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.002733 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.940231 B =10243.130952 C =10520.184079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.082 4.082 5 C -0.112 4.112 6 C -0.121 4.121 7 C -0.100 4.100 8 C -0.081 4.081 9 C 0.099 3.901 10 O -0.342 6.342 11 C 0.054 3.946 12 C -0.007 4.007 13 N -0.455 5.455 14 C 0.156 3.844 15 C -0.501 4.501 16 H 0.063 0.937 17 C 0.052 3.948 18 N -0.902 5.902 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.273 1.273 22 H -0.287 1.287 23 C -0.008 4.008 24 C -0.096 4.096 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.028 0.972 41 H 0.002 0.998 42 H 0.261 0.739 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.167 4.578 -5.969 26.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.202 4.202 4 C -0.082 4.082 5 C -0.130 4.130 6 C -0.139 4.139 7 C -0.119 4.119 8 C -0.081 4.081 9 C 0.023 3.977 10 O -0.260 6.260 11 C -0.005 4.005 12 C -0.136 4.136 13 N -0.178 5.178 14 C 0.030 3.970 15 C -0.540 4.540 16 H 0.081 0.919 17 C -0.148 4.148 18 N -0.542 5.542 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.198 1.198 22 H -0.213 1.213 23 C -0.137 4.137 24 C -0.114 4.114 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.020 0.980 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -24.867 5.405 -5.767 26.093 hybrid contribution 0.775 -0.788 0.626 1.270 sum -24.093 4.617 -5.141 25.064 Atomic orbital electron populations 1.21856 0.94448 1.01919 1.01812 1.20120 0.95781 0.96163 0.95447 1.21860 1.01634 0.94969 1.01749 1.19810 0.98028 0.95677 0.94708 1.20955 1.00289 0.99751 0.92016 1.21109 0.98390 0.95876 0.98545 1.21080 0.97367 0.96429 0.96980 1.19596 0.97736 0.97302 0.93452 1.21362 0.82297 0.93601 1.00473 1.88087 1.13447 1.30672 1.93837 1.23333 0.89760 0.88995 0.98413 1.24029 0.93016 1.00228 0.96346 1.69039 1.05190 1.41071 1.02502 1.20297 0.84242 0.94361 0.98137 1.21121 0.96274 1.26390 1.10187 0.91863 1.25015 0.97193 0.95435 0.97190 1.69961 1.09236 1.35943 1.39062 0.86471 0.78877 0.79131 0.82796 1.20610 1.19824 1.21327 1.24219 0.94378 0.96711 0.98441 1.20945 0.97209 0.95079 0.98202 0.92517 0.92458 0.92589 0.90465 0.92239 0.92464 0.92507 0.86327 0.86030 0.85893 0.92763 0.92561 0.91084 0.90163 0.91221 0.95369 0.97995 0.92984 0.91259 0.90329 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.01 37.16 0.33 -0.65 16 2 C -0.06 -0.47 3.09 -91.77 -0.28 -0.75 16 3 C -0.14 -1.14 9.01 37.15 0.33 -0.81 16 4 C -0.08 -0.85 4.78 -104.62 -0.50 -1.35 16 5 C -0.11 -1.13 8.71 -39.58 -0.34 -1.47 16 6 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 7 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 8 C -0.08 -1.02 5.51 -104.62 -0.58 -1.59 16 9 C 0.10 1.25 5.90 36.01 0.21 1.47 16 10 O -0.34 -5.74 10.38 -35.23 -0.37 -6.11 16 11 C 0.05 0.88 4.66 -26.20 -0.12 0.75 16 12 C -0.01 -0.12 7.52 -7.53 -0.06 -0.18 16 13 N -0.46 -10.61 6.32 -246.08 -1.55 -12.16 16 14 C 0.16 4.23 4.57 -4.98 -0.02 4.21 16 15 C -0.50 -14.85 9.39 -34.44 -0.32 -15.18 16 16 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 19 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C -0.01 -0.15 7.55 -7.54 -0.06 -0.21 16 24 C -0.10 -1.12 9.33 -39.58 -0.37 -1.49 16 25 H 0.06 0.37 7.39 -51.93 -0.38 -0.01 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.62 7.88 -51.93 -0.41 0.21 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.43 7.39 -51.93 -0.38 0.04 16 32 H 0.12 0.96 7.10 -52.49 -0.37 0.59 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.05 0.58 8.09 -51.93 -0.42 0.16 16 36 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 37 H 0.07 0.93 7.88 -51.93 -0.41 0.53 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.07 1.23 7.91 -51.93 -0.41 0.82 16 40 H 0.03 0.81 8.08 -51.92 -0.42 0.39 16 41 H 0.00 0.06 7.30 -51.93 -0.38 -0.32 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.07 1.32 7.42 -51.93 -0.39 0.94 16 44 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 45 H 0.12 1.26 7.95 -52.49 -0.42 0.84 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -32.78 368.62 -11.04 -43.82 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -7.74 Total: -2.69 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -2.65 Total: -19.08 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: -0.82 Total: -38.87 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.37 Total: -6.11 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.78 -11.04 -43.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223948109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.669 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds